Wall clock time and date at job start Mon Mar 30 2020 21:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46927 * 2 1 4 4 O 1.42901 * 109.46823 * 119.99826 * 2 1 3 5 5 C 1.52994 * 109.47163 * 239.99922 * 2 1 3 6 6 C 1.53001 * 109.46940 * 174.99620 * 5 2 1 7 7 C 1.50701 * 109.47089 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00262 * 90.00327 * 7 6 5 9 9 C 1.38233 * 120.00188 * 179.97438 * 8 7 6 10 10 C 1.38238 * 119.99847 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99714 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47275 * 339.99926 * 11 10 9 13 13 N 1.46898 * 109.46797 * 219.99442 * 11 10 9 14 14 C 1.50700 * 109.47148 * 99.99703 * 11 10 9 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 C 1.38234 * 120.00038 * 0.27182 * 10 9 8 23 23 C 1.38235 * 119.99846 * 269.97601 * 7 6 5 24 24 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47050 * 300.00077 * 1 2 3 26 26 H 1.08996 * 109.46928 * 60.00013 * 1 2 3 27 27 H 0.96697 * 114.00136 * 60.01013 * 4 2 1 28 28 H 1.09003 * 109.46948 * 55.00334 * 5 2 1 29 29 H 1.08994 * 109.47244 * 294.99443 * 5 2 1 30 30 H 1.09002 * 109.47090 * 59.99891 * 6 5 2 31 31 H 1.08998 * 109.47684 * 300.00199 * 6 5 2 32 32 H 1.08004 * 119.99329 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.99887 * 180.02562 * 9 8 7 34 34 H 1.00892 * 111.00332 * 300.00256 * 13 11 10 35 35 H 1.00905 * 110.99665 * 63.96030 * 13 11 10 36 36 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 37 37 H 1.07997 * 119.99927 * 179.73156 * 22 10 9 38 38 H 1.08005 * 120.00180 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 6 3.5648 -0.6132 -1.3136 7 6 4.0672 -1.3230 -2.5444 8 6 4.1992 -0.6330 -3.7349 9 6 4.6605 -1.2840 -4.8637 10 6 4.9903 -2.6251 -4.8019 11 6 5.4937 -3.3346 -6.0324 12 1 5.2053 -2.7717 -6.9200 13 7 4.9091 -4.6808 -6.0949 14 6 6.9957 -3.4416 -5.9715 15 1 7.5320 -3.0366 -5.1260 16 6 7.6850 -4.0573 -6.9945 17 7 7.0319 -4.5509 -8.0237 18 14 9.5467 -4.1905 -6.9187 19 1 10.0427 -4.8907 -8.1306 20 1 10.1381 -2.8298 -6.8556 21 1 9.9392 -4.9574 -5.7091 22 6 4.8534 -3.3164 -3.6127 23 6 4.3965 -2.6642 -2.4827 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7211 -1.5952 1.2329 28 1 1.6054 -0.2617 -2.1369 29 1 1.7518 -1.7715 -1.2055 30 1 3.9995 -1.0726 -0.4259 31 1 3.8532 0.4371 -1.3573 32 1 3.9419 0.4149 -3.7830 33 1 4.7640 -0.7447 -5.7937 34 1 5.1621 -5.2230 -5.2825 35 1 3.9067 -4.6351 -6.2014 36 1 6.0651 -4.4821 -8.0629 37 1 5.1069 -4.3651 -3.5655 38 1 4.2934 -3.2034 -1.5526 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:22 Heat of formation + Delta-G solvation = -75.386870 kcal Electronic energy + Delta-G solvation = -17630.445774 eV Core-core repulsion = 14856.466745 eV Total energy + Delta-G solvation = -2773.979029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55436 -38.81958 -36.98033 -34.55436 -33.20509 -31.94534 -31.57128 -29.41944 -27.48636 -25.27488 -23.74145 -23.16929 -22.28990 -21.33037 -18.90878 -17.43513 -17.22971 -16.91030 -16.54843 -16.13415 -15.80079 -15.54560 -15.14527 -14.72404 -14.42641 -14.26112 -14.10106 -13.71683 -13.54410 -13.40527 -12.81701 -12.67343 -12.53820 -12.46001 -12.04295 -11.97921 -11.84523 -11.62590 -11.60191 -10.94402 -10.78189 -10.50259 -9.81052 -9.49097 -9.15268 -8.40724 -6.27445 0.51699 0.51934 1.54011 1.61588 1.81055 2.60835 2.89650 3.29113 3.50718 3.75158 3.91563 4.04747 4.15708 4.17552 4.20361 4.22891 4.31681 4.44338 4.64314 4.64696 4.68226 4.78227 4.92201 4.96573 4.97766 5.17418 5.22548 5.26156 5.30836 5.36180 5.56805 5.72542 5.84161 5.91187 6.16342 6.21734 6.65386 6.74792 6.88153 7.01825 7.63986 8.95062 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.045521 B = 0.004019 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.949054 B = 6965.602107 C = 7117.592961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.097 0.903 4 O -0.581 6.581 5 C -0.138 4.138 6 C -0.065 4.065 7 C -0.098 4.098 8 C -0.116 4.116 9 C -0.139 4.139 10 C -0.098 4.098 11 C 0.239 3.761 12 H 0.004 0.996 13 N -0.835 5.835 14 C -0.617 4.617 15 H 0.033 0.967 16 C -0.011 4.011 17 N -0.919 5.919 18 Si 1.110 2.890 19 H -0.284 1.284 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.130 4.130 23 C -0.116 4.116 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.386 0.614 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.330 0.670 35 H 0.317 0.683 36 H 0.278 0.722 37 H 0.110 0.890 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 8.118 16.082 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.045 3.955 3 H 0.115 0.885 4 O -0.389 6.389 5 C -0.176 4.176 6 C -0.102 4.102 7 C -0.099 4.099 8 C -0.134 4.134 9 C -0.157 4.157 10 C -0.101 4.101 11 C 0.130 3.870 12 H 0.022 0.978 13 N -0.363 5.363 14 C -0.655 4.655 15 H 0.051 0.949 16 C -0.215 4.215 17 N -0.554 5.554 18 Si 0.933 3.067 19 H -0.209 1.209 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.149 4.149 23 C -0.134 4.134 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.236 0.764 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.199 8.026 14.690 19.602 hybrid contribution -2.000 0.143 0.970 2.227 sum -12.199 8.169 15.660 21.466 Atomic orbital electron populations 1.22465 0.95505 1.03030 1.02966 1.21940 0.93395 0.96488 0.83686 0.88549 1.86547 1.77694 1.30263 1.44364 1.22252 0.94589 1.01658 0.99057 1.20463 0.95860 1.00101 0.93805 1.20064 1.00055 0.93930 0.95804 1.21195 0.99843 1.00323 0.92014 1.21142 1.01006 0.94351 0.99234 1.21151 0.95997 0.95373 0.97546 1.18037 0.93994 0.85752 0.89238 0.97834 1.59215 1.13068 1.16580 1.47485 1.21973 0.91393 1.43486 1.08656 0.94870 1.27008 1.10121 0.92294 0.92076 1.70674 1.12019 1.42059 1.30632 0.83037 0.70310 0.77074 0.76279 1.20928 1.20157 1.20068 1.20964 1.01040 0.99990 0.92872 1.21188 0.99492 0.94793 0.97947 0.91797 0.91825 0.91028 0.76442 0.90859 0.91425 0.90548 0.90660 0.84261 0.87402 0.85634 0.87186 0.91059 0.87192 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.53 71.98 0.69 -1.40 16 2 C 0.10 1.48 3.59 30.59 0.11 1.59 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 4 O -0.58 -9.47 12.88 -148.98 -1.92 -11.39 16 5 C -0.14 -2.25 4.88 30.59 0.15 -2.10 16 6 C -0.07 -1.33 5.24 29.85 0.16 -1.17 16 7 C -0.10 -2.75 5.13 -19.87 -0.10 -2.85 16 8 C -0.12 -3.58 9.70 22.27 0.22 -3.36 16 9 C -0.14 -5.38 9.67 22.27 0.22 -5.16 16 10 C -0.10 -4.27 4.88 -19.86 -0.10 -4.37 16 11 C 0.24 12.29 2.47 43.42 0.11 12.40 16 12 H 0.00 0.22 7.87 -2.39 -0.02 0.20 16 13 N -0.83 -39.51 7.61 -174.96 -1.33 -40.84 16 14 C -0.62 -35.55 8.71 25.60 0.22 -35.33 16 15 H 0.03 1.95 7.74 -2.91 -0.02 1.92 16 16 C -0.01 -0.67 5.39 84.65 0.46 -0.21 16 17 N -0.92 -57.07 13.51 21.45 0.29 -56.78 16 18 Si 1.11 51.69 29.90 68.60 2.05 53.74 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.13 -4.96 9.29 22.27 0.21 -4.75 16 23 C -0.12 -3.57 9.70 22.27 0.22 -3.36 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.39 3.81 9.05 -74.06 -0.67 3.14 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.56 7.77 -2.39 -0.02 1.54 16 31 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 32 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.11 4.20 8.04 -2.91 -0.02 4.18 16 34 H 0.33 14.97 7.33 -89.70 -0.66 14.31 16 35 H 0.32 13.21 9.06 -89.69 -0.81 12.40 16 36 H 0.28 17.44 6.39 -92.70 -0.59 16.85 16 37 H 0.11 4.18 6.65 -2.91 -0.02 4.17 16 38 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -68.62 316.35 0.74 -67.88 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.90 Total: 37.46 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 2.54 Total: -50.08 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -1.04 Total: -97.62 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.92 Total: -11.39 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -68.62 0.74 -67.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.504 kcal (2) G-P(sol) polarization free energy of solvation -68.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds