Wall clock time and date at job start Mon Mar 30 2020 21:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47146 * 2 1 4 4 O 1.42902 * 109.46993 * 240.00131 * 2 1 3 5 5 C 1.52994 * 109.47435 * 119.99901 * 2 1 3 6 6 C 1.50697 * 109.47611 * 184.99624 * 5 2 1 7 7 C 1.38235 * 119.99729 * 89.99678 * 6 5 2 8 8 C 1.38236 * 120.00082 * 180.02562 * 7 6 5 9 9 C 1.38231 * 120.00137 * 359.95646 * 8 7 6 10 10 C 1.50695 * 120.00476 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47396 * 340.01008 * 10 9 8 12 12 N 1.46897 * 109.47684 * 220.00399 * 10 9 8 13 13 C 1.50702 * 109.47204 * 99.99976 * 10 9 8 14 14 H 1.08006 * 119.99695 * 26.95147 * 13 10 9 15 15 C 1.37868 * 120.00771 * 206.94704 * 13 10 9 16 16 N 1.31515 * 119.99806 * 353.70786 * 15 13 10 17 17 Si 1.86803 * 120.00316 * 173.42580 * 15 13 10 18 18 H 1.48501 * 109.46865 * 90.00476 * 17 15 13 19 19 H 1.48502 * 109.47123 * 210.00247 * 17 15 13 20 20 H 1.48499 * 109.47096 * 330.00286 * 17 15 13 21 21 C 1.38235 * 119.99829 * 0.28086 * 9 8 7 22 22 C 1.38236 * 120.00134 * 359.51114 * 21 9 8 23 23 H 1.09003 * 109.46884 * 299.99744 * 1 2 3 24 24 H 1.09005 * 109.47231 * 59.99968 * 1 2 3 25 25 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46990 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47082 * 300.00123 * 3 2 1 28 28 H 1.09000 * 109.47345 * 59.99954 * 3 2 1 29 29 H 0.96703 * 113.99847 * 60.00104 * 4 2 1 30 30 H 1.09003 * 109.47252 * 65.00097 * 5 2 1 31 31 H 1.08997 * 109.47177 * 305.00483 * 5 2 1 32 32 H 1.08003 * 120.00231 * 359.97438 * 7 6 5 33 33 H 1.08006 * 120.00002 * 179.97438 * 8 7 6 34 34 H 1.00902 * 111.00039 * 173.87918 * 12 10 9 35 35 H 1.00891 * 111.00104 * 297.83933 * 12 10 9 36 36 H 0.97002 * 119.99855 * 354.25762 * 16 15 13 37 37 H 1.08001 * 120.00043 * 179.72514 * 21 9 8 38 38 H 1.07997 * 120.00504 * 180.25895 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5419 -0.6150 1.3126 7 6 4.1324 0.4493 1.9681 8 6 5.5101 0.5471 2.0259 9 6 6.2973 -0.4198 1.4291 10 6 7.7991 -0.3129 1.4915 11 1 8.0813 0.7166 1.7121 12 7 8.3727 -0.7118 0.1993 13 6 8.3227 -1.2201 2.5750 14 1 7.7654 -2.1011 2.8577 15 6 9.5129 -0.9257 3.2054 16 7 10.2527 0.0747 2.7795 17 14 10.0711 -1.9429 4.6695 18 1 10.8922 -3.0853 4.1943 19 1 10.8819 -1.0956 5.5805 20 1 8.8829 -2.4561 5.3975 21 6 5.7068 -1.4814 0.7694 22 6 4.3291 -1.5816 0.7152 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.7209 -0.2700 -1.9980 30 1 1.7517 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1369 32 1 3.5174 1.2048 2.4343 33 1 5.9714 1.3788 2.5377 34 1 9.3692 -0.5545 0.1820 35 1 8.1548 -1.6741 -0.0114 36 1 10.0041 0.5526 1.9727 37 1 6.3218 -2.2345 0.2992 38 1 3.8678 -2.4132 0.2035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:44 Heat of formation + Delta-G solvation = -50.451147 kcal Electronic energy + Delta-G solvation = -18201.831051 eV Core-core repulsion = 15428.933316 eV Total energy + Delta-G solvation = -2772.897735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.35413 -37.78792 -35.06159 -32.98439 -31.49684 -30.41013 -29.79223 -27.40520 -26.74321 -24.94414 -22.40432 -21.89153 -20.34631 -19.66004 -17.03904 -16.67709 -15.84963 -15.16960 -15.12264 -14.38315 -13.93903 -13.80322 -13.66215 -13.56654 -12.99754 -12.68977 -12.55776 -12.28011 -12.00492 -11.86197 -11.79876 -11.66483 -11.37885 -11.02310 -10.80361 -10.61465 -10.22841 -10.18218 -9.95822 -9.60657 -9.44744 -8.64427 -8.15528 -7.82754 -7.21049 -6.44143 -4.23679 2.14272 2.17683 3.37396 3.41428 3.57767 4.19502 4.40647 4.53217 4.77508 4.84255 5.02229 5.24370 5.34161 5.41816 5.48093 5.56486 5.63459 5.70890 5.78077 5.84117 5.91774 5.96675 6.06301 6.23023 6.27856 6.35403 6.49547 6.65918 6.79867 7.01691 7.22298 7.29104 7.60443 7.69264 7.81169 7.95915 8.25176 8.50389 8.67462 8.75548 9.48710 10.87780 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.040872 B = 0.004875 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.901881 B = 5742.155490 C = 5867.210674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.131 3.869 3 C -0.181 4.181 4 O -0.553 6.553 5 C -0.060 4.060 6 C -0.108 4.108 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.017 4.017 10 C 0.219 3.781 11 H 0.050 0.950 12 N -0.853 5.853 13 C -0.621 4.621 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.906 5.906 17 Si 1.067 2.933 18 H -0.288 1.288 19 H -0.282 1.282 20 H -0.288 1.288 21 C -0.115 4.115 22 C -0.101 4.101 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.370 0.630 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.330 0.670 35 H 0.321 0.679 36 H 0.271 0.729 37 H 0.112 0.888 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 0.540 -4.728 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.091 3.909 3 C -0.238 4.238 4 O -0.358 6.358 5 C -0.097 4.097 6 C -0.108 4.108 7 C -0.137 4.137 8 C -0.147 4.147 9 C -0.018 4.018 10 C 0.111 3.889 11 H 0.068 0.932 12 N -0.380 5.380 13 C -0.661 4.661 14 H 0.068 0.932 15 C -0.178 4.178 16 N -0.542 5.542 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.208 1.208 20 H -0.214 1.214 21 C -0.134 4.134 22 C -0.119 4.119 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.216 0.784 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.984 0.633 -3.421 16.358 hybrid contribution -0.921 -0.181 -0.909 1.307 sum -16.905 0.452 -4.331 17.457 Atomic orbital electron populations 1.22512 0.96237 1.02488 1.02280 1.21144 0.91511 0.91685 0.86571 1.22577 1.03697 0.95918 1.01619 1.86640 1.77229 1.56607 1.15283 1.20490 0.92904 1.00993 0.95324 1.19349 0.94016 0.96320 1.01119 1.20804 0.94595 0.97750 1.00513 1.20915 0.93120 0.99566 1.01084 1.20216 0.97090 0.92282 0.92217 1.18223 0.86333 0.97188 0.87192 0.93223 1.59590 1.17250 1.26270 1.34900 1.22561 1.08632 1.11386 1.23488 0.93176 1.25888 0.93343 0.97096 1.01464 1.70797 1.39429 1.19901 1.24062 0.83578 0.75752 0.75435 0.75697 1.21454 1.20792 1.21404 1.20857 0.93871 0.98525 1.00107 1.20834 0.93481 0.98465 0.99121 0.91713 0.92520 0.91932 0.90514 0.93005 0.91958 0.78400 0.90944 0.90408 0.87441 0.87019 0.85899 0.86854 0.91740 0.86990 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.81 37.16 0.33 -1.21 16 2 C 0.13 1.48 1.09 -90.62 -0.10 1.38 16 3 C -0.18 -2.03 8.05 37.16 0.30 -1.73 16 4 O -0.55 -6.84 12.47 -35.23 -0.44 -7.28 16 5 C -0.06 -0.77 4.67 -27.89 -0.13 -0.90 16 6 C -0.11 -1.79 4.25 -104.62 -0.44 -2.23 16 7 C -0.12 -2.05 7.85 -39.58 -0.31 -2.36 16 8 C -0.13 -2.64 9.67 -39.58 -0.38 -3.03 16 9 C -0.02 -0.39 4.94 -104.63 -0.52 -0.91 16 10 C 0.22 5.53 2.56 -70.02 -0.18 5.35 16 11 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 12 N -0.85 -19.75 9.01 -6.65 -0.06 -19.81 16 13 C -0.62 -17.09 8.56 -34.44 -0.29 -17.38 16 14 H 0.05 1.42 7.82 -52.48 -0.41 1.01 16 15 C 0.03 0.78 5.45 -17.82 -0.10 0.68 16 16 N -0.91 -26.43 13.55 55.43 0.75 -25.68 16 17 Si 1.07 24.93 29.91 -169.99 -5.08 19.84 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.12 -2.39 9.30 -39.58 -0.37 -2.76 16 22 C -0.10 -1.84 9.40 -39.58 -0.37 -2.22 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.08 6.14 -51.93 -0.32 0.76 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.37 3.14 9.05 45.56 0.41 3.56 16 30 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.11 1.57 8.03 -52.48 -0.42 1.15 16 33 H 0.11 2.26 8.04 -52.48 -0.42 1.84 16 34 H 0.33 7.81 8.43 -39.29 -0.33 7.48 16 35 H 0.32 7.07 7.41 -39.30 -0.29 6.78 16 36 H 0.27 7.85 6.30 -40.82 -0.26 7.59 16 37 H 0.11 2.28 6.70 -52.49 -0.35 1.93 16 38 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -30.38 310.63 -7.64 -38.02 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -4.92 Total: 17.56 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -2.57 Total: -27.33 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.69 Total: -45.49 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.44 Total: -7.28 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.38 -7.64 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.430 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds