Wall clock time and date at job start Mon Mar 30 2020 21:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46750 * 2 1 4 4 O 1.42900 * 109.47016 * 240.00064 * 2 1 3 5 5 C 1.53003 * 109.47233 * 119.99806 * 2 1 3 6 6 C 1.50694 * 109.46762 * 184.11090 * 5 2 1 7 7 C 1.38253 * 120.00441 * 278.38734 * 6 5 2 8 8 C 1.38208 * 120.00570 * 180.23554 * 7 6 5 9 9 C 1.38267 * 119.99794 * 359.81336 * 8 7 6 10 10 C 1.38216 * 119.99705 * 359.97438 * 9 8 7 11 11 C 1.38216 * 119.99987 * 98.18541 * 6 5 2 12 12 C 1.50706 * 119.99907 * 359.97438 * 11 6 5 13 13 H 1.09004 * 109.46957 * 326.30521 * 12 11 6 14 14 N 1.46904 * 109.46918 * 206.30890 * 12 11 6 15 15 C 1.50696 * 109.47112 * 86.30924 * 12 11 6 16 16 H 1.08006 * 120.00049 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00105 * 180.02562 * 15 12 11 18 18 N 1.31526 * 119.99895 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00280 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47285 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47179 * 299.99515 * 19 17 15 22 22 H 1.48499 * 109.47380 * 59.99494 * 19 17 15 23 23 H 1.08993 * 109.47170 * 299.99991 * 1 2 3 24 24 H 1.08996 * 109.47422 * 60.00193 * 1 2 3 25 25 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46682 * 173.89941 * 3 2 1 27 27 H 1.08997 * 109.46859 * 293.89653 * 3 2 1 28 28 H 1.09002 * 109.47220 * 53.89649 * 3 2 1 29 29 H 0.96698 * 114.00274 * 299.99354 * 4 2 1 30 30 H 1.09001 * 109.46687 * 64.10765 * 5 2 1 31 31 H 1.08995 * 109.47158 * 304.11086 * 5 2 1 32 32 H 1.08007 * 119.99849 * 0.07161 * 7 6 5 33 33 H 1.07995 * 120.00754 * 179.83865 * 8 7 6 34 34 H 1.08000 * 120.00132 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.99863 * 179.97438 * 10 9 8 36 36 H 1.00897 * 111.00062 * 299.99979 * 14 12 11 37 37 H 1.00899 * 110.99898 * 63.95581 * 14 12 11 38 38 H 0.96999 * 119.99740 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 3.5435 -0.6336 1.3012 7 6 4.3132 -1.5114 0.5607 8 6 5.6922 -1.4342 0.6120 9 6 6.3020 -0.4764 1.4010 10 6 5.5325 0.4041 2.1379 11 6 4.1531 0.3272 2.0858 12 6 3.3141 1.2875 2.8890 13 1 2.3959 1.5101 2.3455 14 7 4.0667 2.5300 3.1084 15 6 2.9729 0.6656 4.2186 16 1 3.3276 -0.3261 4.4579 17 6 2.2069 1.3620 5.1291 18 7 1.7744 2.5695 4.8375 19 14 1.7844 0.5915 6.7774 20 1 0.9576 1.5376 7.5689 21 1 1.0244 -0.6651 6.5562 22 1 3.0356 0.2893 7.5179 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1245 1.4445 0.1092 27 1 1.7685 1.9238 -0.9396 28 1 1.5901 1.9870 0.8303 29 1 1.7211 -1.5952 -1.2329 30 1 1.7380 -1.7679 1.2132 31 1 1.6178 -0.2517 2.1377 32 1 3.8369 -2.2594 -0.0560 33 1 6.2935 -2.1216 0.0356 34 1 7.3796 -0.4157 1.4408 35 1 6.0089 1.1519 2.7545 36 1 4.9230 2.3502 3.6108 37 1 4.2518 2.9996 2.2347 38 1 1.9941 2.9697 3.9817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260193946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:19 Heat of formation + Delta-G solvation = -39.297310 kcal Electronic energy + Delta-G solvation = -19214.461307 eV Core-core repulsion = 16442.047238 eV Total energy + Delta-G solvation = -2772.414068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60498 -37.46854 -34.90764 -32.85326 -31.53311 -30.76945 -29.14843 -27.09214 -26.14715 -25.54254 -22.79647 -21.19047 -20.25625 -19.56174 -16.83546 -16.57223 -15.65041 -15.24157 -14.69203 -14.56340 -14.22777 -14.03253 -13.66401 -13.14621 -12.98705 -12.43888 -12.25486 -12.05629 -11.83696 -11.72304 -11.56247 -11.38111 -11.13806 -10.84654 -10.73697 -10.48019 -10.35335 -10.09132 -9.82997 -9.64020 -8.87638 -8.34494 -8.15591 -7.71167 -7.46130 -6.17926 -4.01370 1.97696 2.07692 3.46205 3.48155 3.66394 4.35189 4.50524 4.61212 5.08796 5.17612 5.31632 5.42202 5.44723 5.50899 5.59543 5.73156 5.79535 5.89644 6.01818 6.11941 6.13161 6.18907 6.25140 6.29564 6.36753 6.46479 6.59680 6.71919 6.76807 6.98363 7.05623 7.21069 7.45211 7.65665 7.89700 8.00405 8.31978 8.66920 8.77134 9.05596 9.81204 11.21059 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.009312 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.191461 B = 3006.231692 C = 3735.191640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.135 3.865 3 C -0.139 4.139 4 O -0.559 6.559 5 C -0.111 4.111 6 C -0.071 4.071 7 C -0.107 4.107 8 C -0.149 4.149 9 C -0.126 4.126 10 C -0.134 4.134 11 C -0.062 4.062 12 C 0.230 3.770 13 H 0.053 0.947 14 N -0.832 5.832 15 C -0.605 4.605 16 H 0.044 0.956 17 C 0.039 3.961 18 N -0.890 5.890 19 Si 1.060 2.940 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.290 1.290 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.367 0.633 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.325 0.675 37 H 0.301 0.699 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -6.079 -9.289 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.095 3.905 3 C -0.196 4.196 4 O -0.364 6.364 5 C -0.149 4.149 6 C -0.072 4.072 7 C -0.125 4.125 8 C -0.167 4.167 9 C -0.145 4.145 10 C -0.153 4.153 11 C -0.064 4.064 12 C 0.121 3.879 13 H 0.071 0.929 14 N -0.360 5.360 15 C -0.644 4.644 16 H 0.062 0.938 17 C -0.171 4.171 18 N -0.524 5.524 19 Si 0.889 3.111 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.217 1.217 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.213 0.787 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.227 -4.937 -7.546 9.021 hybrid contribution 1.565 -1.497 -1.809 2.822 sum 1.793 -6.435 -9.355 11.495 Atomic orbital electron populations 1.22486 0.96034 1.02049 1.02873 1.21163 0.91867 0.93227 0.84261 1.21902 1.02530 0.93408 1.01793 1.86571 1.77427 1.28097 1.44342 1.21368 0.92895 1.00576 1.00033 1.19458 0.94871 0.95875 0.96984 1.20853 0.93540 0.99124 0.98962 1.20852 0.94716 0.99836 1.01274 1.20962 0.98846 0.96473 0.98178 1.20932 0.93962 1.00174 1.00206 1.21348 0.94395 0.96877 0.93824 1.18590 0.91083 0.83556 0.94630 0.92933 1.59467 1.26482 1.27031 1.22975 1.21652 1.38251 1.03162 1.01345 0.93804 1.25564 0.93456 0.95408 1.02627 1.70565 1.41688 1.13742 1.26439 0.83693 0.76310 0.75175 0.75877 1.20920 1.21713 1.21711 0.91044 0.92193 0.92666 0.91644 0.92863 0.90385 0.78727 0.91873 0.87541 0.87317 0.87384 0.87370 0.86950 0.86132 0.88863 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.81 37.16 0.33 -2.07 16 2 C 0.13 2.10 1.09 -90.61 -0.10 2.00 16 3 C -0.14 -2.36 7.50 37.16 0.28 -2.09 16 4 O -0.56 -8.18 11.97 -35.23 -0.42 -8.60 16 5 C -0.11 -1.95 4.29 -27.88 -0.12 -2.07 16 6 C -0.07 -1.36 4.08 -104.63 -0.43 -1.78 16 7 C -0.11 -1.83 9.01 -39.59 -0.36 -2.19 16 8 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 9 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 10 C -0.13 -2.61 9.27 -39.58 -0.37 -2.97 16 11 C -0.06 -1.30 3.88 -104.62 -0.41 -1.70 16 12 C 0.23 5.34 1.51 -70.01 -0.11 5.24 16 13 H 0.05 1.27 3.85 -51.93 -0.20 1.07 16 14 N -0.83 -18.56 7.42 -6.65 -0.05 -18.61 16 15 C -0.61 -16.22 8.12 -34.44 -0.28 -16.50 16 16 H 0.04 1.22 7.74 -52.48 -0.41 0.82 16 17 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 18 N -0.89 -25.93 13.51 55.43 0.75 -25.18 16 19 Si 1.06 24.87 29.90 -169.99 -5.08 19.79 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.21 6.02 -51.93 -0.31 0.90 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.40 6.55 -51.93 -0.34 1.06 16 29 H 0.37 3.95 9.05 45.56 0.41 4.36 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.11 2.20 5.85 -51.93 -0.30 1.89 16 32 H 0.11 1.61 7.93 -52.48 -0.42 1.19 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 2.10 6.31 -52.49 -0.33 1.77 16 36 H 0.33 7.13 7.19 -39.29 -0.28 6.85 16 37 H 0.30 6.00 9.06 -39.29 -0.36 5.65 16 38 H 0.29 8.39 6.39 -40.82 -0.26 8.13 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -30.02 299.94 -7.28 -37.30 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -4.55 Total: 19.34 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -2.45 Total: -28.57 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.70 Total: -43.78 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.42 Total: -8.60 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.02 -7.28 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.995 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds