Wall clock time and date at job start Mon Mar 30 2020 21:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46750 * 2 1 4 4 O 1.42900 * 109.47016 * 240.00064 * 2 1 3 5 5 C 1.53003 * 109.47233 * 119.99806 * 2 1 3 6 6 C 1.50694 * 109.46762 * 184.11090 * 5 2 1 7 7 C 1.38253 * 120.00441 * 278.38734 * 6 5 2 8 8 C 1.38208 * 120.00570 * 180.23554 * 7 6 5 9 9 C 1.38267 * 119.99794 * 359.81336 * 8 7 6 10 10 C 1.38216 * 119.99705 * 359.97438 * 9 8 7 11 11 C 1.38216 * 119.99987 * 98.18541 * 6 5 2 12 12 C 1.50706 * 119.99907 * 359.97438 * 11 6 5 13 13 H 1.09004 * 109.46957 * 326.30521 * 12 11 6 14 14 N 1.46904 * 109.46918 * 206.30890 * 12 11 6 15 15 C 1.50696 * 109.47112 * 86.30924 * 12 11 6 16 16 H 1.08006 * 120.00049 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00105 * 180.02562 * 15 12 11 18 18 N 1.31526 * 119.99895 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00280 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47285 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47179 * 299.99515 * 19 17 15 22 22 H 1.48499 * 109.47380 * 59.99494 * 19 17 15 23 23 H 1.08993 * 109.47170 * 299.99991 * 1 2 3 24 24 H 1.08996 * 109.47422 * 60.00193 * 1 2 3 25 25 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46682 * 173.89941 * 3 2 1 27 27 H 1.08997 * 109.46859 * 293.89653 * 3 2 1 28 28 H 1.09002 * 109.47220 * 53.89649 * 3 2 1 29 29 H 0.96698 * 114.00274 * 299.99354 * 4 2 1 30 30 H 1.09001 * 109.46687 * 64.10765 * 5 2 1 31 31 H 1.08995 * 109.47158 * 304.11086 * 5 2 1 32 32 H 1.08007 * 119.99849 * 0.07161 * 7 6 5 33 33 H 1.07995 * 120.00754 * 179.83865 * 8 7 6 34 34 H 1.08000 * 120.00132 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.99863 * 179.97438 * 10 9 8 36 36 H 1.00897 * 111.00062 * 299.99979 * 14 12 11 37 37 H 1.00899 * 110.99898 * 63.95581 * 14 12 11 38 38 H 0.96999 * 119.99740 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 3.5435 -0.6336 1.3012 7 6 4.3132 -1.5114 0.5607 8 6 5.6922 -1.4342 0.6120 9 6 6.3020 -0.4764 1.4010 10 6 5.5325 0.4041 2.1379 11 6 4.1531 0.3272 2.0858 12 6 3.3141 1.2875 2.8890 13 1 2.3959 1.5101 2.3455 14 7 4.0667 2.5300 3.1084 15 6 2.9729 0.6656 4.2186 16 1 3.3276 -0.3261 4.4579 17 6 2.2069 1.3620 5.1291 18 7 1.7744 2.5695 4.8375 19 14 1.7844 0.5915 6.7774 20 1 0.9576 1.5376 7.5689 21 1 1.0244 -0.6651 6.5562 22 1 3.0356 0.2893 7.5179 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1245 1.4445 0.1092 27 1 1.7685 1.9238 -0.9396 28 1 1.5901 1.9870 0.8303 29 1 1.7211 -1.5952 -1.2329 30 1 1.7380 -1.7679 1.2132 31 1 1.6178 -0.2517 2.1377 32 1 3.8369 -2.2594 -0.0560 33 1 6.2935 -2.1216 0.0356 34 1 7.3796 -0.4157 1.4408 35 1 6.0089 1.1519 2.7545 36 1 4.9230 2.3502 3.6108 37 1 4.2518 2.9996 2.2347 38 1 1.9941 2.9697 3.9817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260193946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:18 Heat of formation + Delta-G solvation = -60.109022 kcal Electronic energy + Delta-G solvation = -19215.363770 eV Core-core repulsion = 16442.047238 eV Total energy + Delta-G solvation = -2773.316532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00669 -38.73576 -36.66769 -34.15108 -33.46898 -32.07240 -30.69402 -28.36997 -27.72354 -27.23619 -24.56752 -22.58024 -21.74567 -20.94747 -18.81008 -17.88116 -17.00745 -16.72293 -16.22572 -16.01153 -15.62676 -15.51679 -15.43653 -14.78008 -14.29836 -13.98561 -13.83565 -13.39056 -13.26433 -13.13350 -13.02628 -12.68277 -12.61817 -12.56429 -12.38748 -11.95442 -11.81063 -11.68682 -11.44792 -10.87345 -10.78977 -10.43388 -9.58414 -9.34620 -9.14036 -8.32443 -6.18265 0.59037 0.65524 1.54822 1.61135 1.80350 2.63162 2.98885 3.34296 3.35045 3.82881 3.93331 4.00260 4.15737 4.18772 4.25307 4.31749 4.35267 4.56859 4.67751 4.72311 4.81888 4.83790 4.93933 5.01550 5.04959 5.13588 5.25059 5.30790 5.34645 5.41669 5.67721 5.73746 5.90765 6.01629 6.26712 6.31996 6.75471 6.81825 6.92824 7.07907 7.70524 9.02944 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.009312 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.191461 B = 3006.231692 C = 3735.191640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.145 3.855 3 C -0.135 4.135 4 O -0.563 6.563 5 C -0.107 4.107 6 C -0.084 4.084 7 C -0.110 4.110 8 C -0.143 4.143 9 C -0.129 4.129 10 C -0.152 4.152 11 C -0.091 4.091 12 C 0.238 3.762 13 H 0.039 0.961 14 N -0.839 5.839 15 C -0.607 4.607 16 H 0.026 0.974 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 1.101 2.899 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.281 1.281 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.386 0.614 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.326 0.674 37 H 0.314 0.686 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 -8.163 -10.670 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 C -0.192 4.192 4 O -0.371 6.371 5 C -0.145 4.145 6 C -0.085 4.085 7 C -0.128 4.128 8 C -0.160 4.160 9 C -0.147 4.147 10 C -0.170 4.170 11 C -0.093 4.093 12 C 0.129 3.871 13 H 0.057 0.943 14 N -0.368 5.368 15 C -0.646 4.646 16 H 0.044 0.956 17 C -0.210 4.210 18 N -0.554 5.554 19 Si 0.926 3.074 20 H -0.212 1.212 21 H -0.200 1.200 22 H -0.208 1.208 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.235 0.765 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.798 -7.045 -8.945 11.413 hybrid contribution 1.469 -0.903 -1.478 2.271 sum 2.266 -7.948 -10.422 13.302 Atomic orbital electron populations 1.22427 0.94445 1.03510 1.02574 1.20921 0.92868 0.91962 0.83784 1.21807 1.01105 0.94875 1.01462 1.86529 1.77624 1.29719 1.43238 1.21311 0.92198 1.01595 0.99373 1.19682 0.95754 0.95896 0.97122 1.21191 0.94035 0.98956 0.98570 1.21316 0.94845 0.99504 1.00370 1.21292 1.00232 0.95774 0.97376 1.21056 0.93715 1.01124 1.01129 1.21142 0.94877 0.97803 0.95480 1.18273 0.91295 0.84262 0.93311 0.94315 1.59293 1.26449 1.27164 1.23889 1.21889 1.37434 1.02330 1.02942 0.95573 1.26745 0.93400 0.95323 1.05574 1.70670 1.43499 1.14861 1.26341 0.83139 0.76561 0.75012 0.72716 1.21174 1.20038 1.20751 0.92759 0.91051 0.90364 0.93506 0.91633 0.92504 0.76467 0.89771 0.91445 0.84472 0.83792 0.84561 0.87368 0.86098 0.87514 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 8.81 71.98 0.63 -3.79 16 2 C 0.15 4.34 1.09 -10.79 -0.01 4.33 16 3 C -0.14 -4.65 7.50 71.98 0.54 -4.11 16 4 O -0.56 -14.85 11.97 -148.98 -1.78 -16.63 16 5 C -0.11 -3.70 4.29 29.85 0.13 -3.57 16 6 C -0.08 -3.13 4.08 -19.87 -0.08 -3.21 16 7 C -0.11 -3.44 9.01 22.27 0.20 -3.24 16 8 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 9 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 10 C -0.15 -5.84 9.27 22.27 0.21 -5.64 16 11 C -0.09 -3.82 3.88 -19.86 -0.08 -3.90 16 12 C 0.24 11.44 1.51 43.42 0.07 11.51 16 13 H 0.04 1.98 3.85 -2.38 -0.01 1.97 16 14 N -0.84 -38.89 7.42 -174.94 -1.30 -40.19 16 15 C -0.61 -33.49 8.12 25.60 0.21 -33.28 16 16 H 0.03 1.49 7.74 -2.91 -0.02 1.47 16 17 C -0.01 -0.36 5.39 84.65 0.46 0.10 16 18 N -0.92 -55.06 13.51 21.45 0.29 -54.77 16 19 Si 1.10 50.75 29.90 68.60 2.05 52.80 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.76 6.02 -2.39 -0.01 1.74 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 2.16 6.55 -2.39 -0.02 2.14 16 29 H 0.39 6.81 9.05 -74.06 -0.67 6.14 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.87 5.85 -2.39 -0.01 2.86 16 32 H 0.14 3.45 7.93 -2.91 -0.02 3.43 16 33 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.11 4.11 6.31 -2.91 -0.02 4.09 16 36 H 0.33 14.79 7.19 -89.70 -0.64 14.14 16 37 H 0.31 13.03 9.06 -89.70 -0.81 12.22 16 38 H 0.28 16.86 6.39 -92.71 -0.59 16.27 16 Total: -1.00 -65.56 299.94 1.11 -64.45 By element: Atomic # 1 Polarization: 47.85 SS G_CDS: -0.86 Total: 46.99 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 2.72 Total: -52.65 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -1.01 Total: -94.96 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.78 Total: -16.63 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -65.56 1.11 -64.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.336 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds