Wall clock time and date at job start Mon Mar 30 2020 21:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46776 * 2 1 4 4 O 1.42895 * 109.46741 * 240.00208 * 2 1 3 5 5 C 1.53001 * 109.47335 * 120.00071 * 2 1 3 6 6 C 1.50693 * 109.47119 * 185.15829 * 5 2 1 7 7 C 1.38261 * 119.99899 * 265.42422 * 6 5 2 8 8 C 1.38210 * 120.00317 * 179.72250 * 7 6 5 9 9 C 1.38261 * 119.99714 * 0.27315 * 8 7 6 10 10 C 1.38216 * 120.00023 * 359.97438 * 9 8 7 11 11 C 1.38211 * 120.00336 * 85.63065 * 6 5 2 12 12 C 1.50698 * 120.00088 * 0.06754 * 11 6 5 13 13 H 1.08999 * 109.46997 * 316.26936 * 12 11 6 14 14 N 1.46903 * 109.47266 * 76.26743 * 12 11 6 15 15 C 1.52996 * 109.47503 * 196.27019 * 12 11 6 16 16 C 1.50697 * 109.47223 * 174.15461 * 15 12 11 17 17 H 1.07996 * 120.00101 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99592 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00231 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47279 * 89.99976 * 20 18 16 22 22 H 1.48499 * 109.47422 * 210.00258 * 20 18 16 23 23 H 1.48506 * 109.46937 * 330.00129 * 20 18 16 24 24 H 1.09000 * 109.46900 * 299.99758 * 1 2 3 25 25 H 1.08995 * 109.47418 * 59.99785 * 1 2 3 26 26 H 1.09002 * 109.46776 * 180.02562 * 1 2 3 27 27 H 0.96707 * 114.00122 * 299.99660 * 4 2 1 28 28 H 1.09004 * 109.46729 * 65.15376 * 5 2 1 29 29 H 1.09001 * 109.46972 * 305.15600 * 5 2 1 30 30 H 1.08000 * 119.99828 * 359.97438 * 7 6 5 31 31 H 1.07993 * 120.00435 * 180.24893 * 8 7 6 32 32 H 1.07996 * 120.00105 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.00096 * 179.97438 * 10 9 8 34 34 H 1.00904 * 110.99805 * 59.99991 * 14 12 11 35 35 H 1.00892 * 111.00293 * 183.95912 * 14 12 11 36 36 H 1.08999 * 109.47066 * 294.15757 * 15 12 11 37 37 H 1.08997 * 109.46960 * 54.15429 * 15 12 11 38 38 H 0.97006 * 119.99622 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5416 -0.6116 1.3147 7 6 4.3317 -1.6231 0.8006 8 6 5.7089 -1.5199 0.8555 9 6 6.2964 -0.4078 1.4295 10 6 5.5066 0.6010 1.9480 11 6 4.1290 0.4981 1.8925 12 6 3.2679 1.5978 2.4583 13 1 2.4538 1.8141 1.7666 14 7 2.7127 1.1698 3.7493 15 6 4.1143 2.8563 2.6592 16 6 3.2264 3.9957 3.0884 17 1 2.1646 3.8380 3.2065 18 6 3.7698 5.2394 3.3313 19 7 5.0629 5.4314 3.1879 20 14 2.6693 6.6517 3.8640 21 1 2.5782 6.6765 5.3459 22 1 3.2415 7.9344 3.3817 23 1 1.3131 6.4670 3.2877 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.7209 -1.5952 -1.2329 28 1 1.7541 -1.7721 1.2042 29 1 1.6033 -0.2635 2.1368 30 1 3.8727 -2.4919 0.3525 31 1 6.3260 -2.3081 0.4503 32 1 7.3725 -0.3273 1.4728 33 1 5.9655 1.4695 2.3968 34 1 3.4482 0.9632 4.4085 35 1 2.0803 1.8637 4.1189 36 1 4.8645 2.6707 3.4280 37 1 4.6096 3.1143 1.7232 38 1 5.4451 6.3065 3.3585 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260291204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:29 Heat of formation + Delta-G solvation = -50.214644 kcal Electronic energy + Delta-G solvation = -18481.229387 eV Core-core repulsion = 15708.341908 eV Total energy + Delta-G solvation = -2772.887479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -39.49630 -37.24027 -35.36009 -32.79333 -32.24554 -30.33042 -29.87013 -27.89425 -26.24962 -24.30250 -22.58784 -21.78994 -20.47083 -19.35885 -16.96235 -16.22864 -15.82862 -15.51250 -14.91944 -14.66003 -14.28047 -14.17240 -14.05887 -13.39455 -13.03693 -12.50631 -12.33797 -12.14463 -11.98711 -11.85925 -11.69711 -11.38573 -11.08398 -10.79680 -10.74551 -10.63644 -10.39916 -10.17014 -9.86136 -9.73153 -9.13935 -8.47173 -8.28197 -8.08932 -7.73843 -6.09167 -4.13086 1.85766 1.92425 3.25636 3.33010 3.35339 4.22958 4.37772 4.55506 4.97570 5.15724 5.26008 5.29700 5.36168 5.43283 5.47192 5.54971 5.63087 5.81728 5.85970 5.93839 6.08922 6.14891 6.27684 6.34065 6.39069 6.50973 6.68095 6.74935 6.94953 7.02107 7.26560 7.46559 7.55144 7.57792 7.79687 7.84978 8.04748 8.21549 8.33977 8.93562 9.52086 11.01735 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.006803 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.153275 B = 4114.958649 C = 5006.947866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.102 0.898 4 O -0.560 6.560 5 C -0.114 4.114 6 C -0.060 4.060 7 C -0.119 4.119 8 C -0.132 4.132 9 C -0.132 4.132 10 C -0.109 4.109 11 C -0.061 4.061 12 C 0.125 3.875 13 H 0.074 0.926 14 N -0.837 5.837 15 C -0.005 4.005 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.365 0.635 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.331 0.669 35 H 0.344 0.656 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 -13.317 -3.881 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.045 3.955 3 H 0.120 0.880 4 O -0.364 6.364 5 C -0.152 4.152 6 C -0.061 4.061 7 C -0.137 4.137 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.128 4.128 11 C -0.061 4.061 12 C 0.015 3.985 13 H 0.092 0.908 14 N -0.365 5.365 15 C -0.044 4.044 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.211 0.789 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.297 -13.188 -4.391 14.549 hybrid contribution -0.130 1.263 0.795 1.498 sum -4.427 -11.925 -3.596 13.219 Atomic orbital electron populations 1.22494 0.96642 1.02011 1.02887 1.21982 0.92253 0.97267 0.84014 0.87988 1.86644 1.77301 1.28240 1.44223 1.21376 0.92764 1.00720 1.00297 1.19520 0.94889 0.93994 0.97647 1.20837 0.93562 0.98644 1.00700 1.20963 0.94803 0.98167 1.01050 1.21073 0.99355 0.94576 0.99955 1.21389 0.93666 0.98772 0.98951 1.20021 0.93800 0.95138 0.97190 1.20462 0.95617 0.91463 0.91005 0.90756 1.59162 1.22495 1.49126 1.05671 1.19869 0.95469 0.91544 0.97489 1.21161 0.94035 0.94802 1.46370 0.92623 1.25008 0.94946 0.98822 0.95406 1.69961 1.10838 1.23278 1.48887 0.86606 0.80802 0.81879 0.78790 1.20676 1.21218 1.19838 0.91221 0.92059 0.92712 0.78876 0.91917 0.87644 0.87204 0.87087 0.86848 0.85148 0.85820 0.84249 0.96331 0.96134 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.53 37.16 0.35 -1.71 16 2 C 0.10 1.43 3.40 -26.73 -0.09 1.33 16 3 H 0.10 1.68 6.86 -51.93 -0.36 1.33 16 4 O -0.56 -7.65 13.03 -35.23 -0.46 -8.11 16 5 C -0.11 -1.59 4.39 -27.89 -0.12 -1.71 16 6 C -0.06 -0.98 4.92 -104.63 -0.51 -1.50 16 7 C -0.12 -1.79 9.61 -39.58 -0.38 -2.17 16 8 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 9 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 10 C -0.11 -2.05 9.02 -39.58 -0.36 -2.41 16 11 C -0.06 -1.14 5.34 -104.63 -0.56 -1.70 16 12 C 0.13 2.50 2.13 -68.87 -0.15 2.36 16 13 H 0.07 1.52 6.15 -51.93 -0.32 1.20 16 14 N -0.84 -15.04 8.23 -5.65 -0.05 -15.08 16 15 C -0.01 -0.13 3.34 -27.89 -0.09 -0.23 16 16 C -0.53 -14.05 8.55 -34.44 -0.29 -14.35 16 17 H 0.06 1.43 7.20 -52.49 -0.38 1.05 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.37 3.44 9.05 45.56 0.41 3.85 16 28 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.11 1.58 6.39 -51.93 -0.33 1.25 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 2.63 6.09 -52.49 -0.32 2.31 16 34 H 0.33 5.94 8.99 -39.29 -0.35 5.58 16 35 H 0.34 6.29 7.96 -39.30 -0.31 5.97 16 36 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 37 H 0.02 0.56 7.92 -51.93 -0.41 0.14 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -29.84 309.95 -8.05 -37.89 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -4.83 Total: 15.32 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -3.10 Total: -25.39 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.69 Total: -40.48 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.46 Total: -8.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.84 -8.05 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260291204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.322 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds