Wall clock time and date at job start Mon Mar 30 2020 21:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47169 * 120.00237 * 2 1 3 5 5 C 1.50707 * 109.47210 * 185.00001 * 4 2 1 6 6 H 1.08001 * 119.99407 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00012 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00173 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46695 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46855 * 119.99914 * 9 7 5 12 12 H 1.48495 * 109.47155 * 239.99920 * 9 7 5 13 13 N 1.46901 * 109.47266 * 240.00050 * 2 1 3 14 14 C 1.46905 * 110.99819 * 85.00006 * 13 2 1 15 15 C 1.50703 * 109.46763 * 180.02562 * 14 13 2 16 16 C 1.38234 * 120.00277 * 90.00269 * 15 14 13 17 17 C 1.38230 * 119.99885 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00236 * 179.70551 * 18 17 16 20 20 O 1.42892 * 109.47389 * 89.99825 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 22 22 C 1.38235 * 119.99539 * 269.97364 * 15 14 13 23 23 H 1.09000 * 109.47214 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46788 * 300.00009 * 1 2 3 25 25 H 1.09000 * 109.47029 * 59.99723 * 1 2 3 26 26 H 1.08998 * 109.46693 * 304.99760 * 4 2 1 27 27 H 1.08999 * 109.47424 * 64.99601 * 4 2 1 28 28 H 0.97003 * 120.00374 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00363 * 208.95292 * 13 2 1 30 30 H 1.08994 * 109.47324 * 60.00529 * 14 13 2 31 31 H 1.09003 * 109.46838 * 300.00028 * 14 13 2 32 32 H 1.07992 * 119.99701 * 359.97271 * 16 15 14 33 33 H 1.08000 * 120.00356 * 179.97438 * 17 16 15 34 34 H 1.09003 * 109.46871 * 209.99878 * 19 18 17 35 35 H 1.09001 * 109.47017 * 329.99216 * 19 18 17 36 36 H 0.96699 * 114.00029 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.00299 * 179.97438 * 21 18 17 38 38 H 1.07997 * 120.00440 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5391 7 6 4.2304 -1.1936 2.3577 8 7 3.5764 -1.8380 3.2994 9 14 6.0922 -1.0624 2.4360 10 1 6.5837 -0.2918 1.2656 11 1 6.4872 -0.3669 3.6873 12 1 6.6855 -2.4235 2.4178 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2227 -2.3469 15 6 2.5874 -0.5218 -3.5560 16 6 1.6944 -1.1519 -4.4025 17 6 2.1576 -1.8343 -5.5118 18 6 3.5137 -1.8861 -5.7751 19 6 4.0191 -2.6356 -6.9808 20 8 4.0781 -1.7510 -8.1014 21 6 4.4065 -1.2551 -4.9292 22 6 3.9435 -0.5739 -3.8190 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2056 28 1 4.0608 -2.2448 4.0348 29 1 2.9173 -1.1205 -1.0288 30 1 2.7588 1.0462 -2.1183 31 1 1.0870 0.6164 -2.5525 32 1 0.6350 -1.1111 -4.1970 33 1 1.4601 -2.3270 -6.1729 34 1 5.0152 -3.0271 -6.7740 35 1 3.3436 -3.4613 -7.2048 36 1 4.3961 -2.1668 -8.9145 37 1 5.4660 -1.2959 -5.1346 38 1 4.6411 -0.0816 -3.1577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:51 Heat of formation + Delta-G solvation = -43.102131 kcal Electronic energy + Delta-G solvation = -17550.989341 eV Core-core repulsion = 14778.410283 eV Total energy + Delta-G solvation = -2772.579058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44918 -37.09698 -36.26556 -33.21067 -32.09816 -30.80222 -29.71255 -27.39050 -26.43493 -23.66417 -22.64727 -22.59060 -20.49631 -19.41054 -17.63507 -16.36606 -16.27872 -15.76438 -15.23133 -14.73425 -14.59273 -14.24351 -13.82970 -13.52101 -13.23769 -13.04665 -12.51108 -12.21605 -11.84850 -11.75659 -11.49690 -11.26807 -11.22122 -10.93180 -10.74613 -10.54413 -10.48533 -10.26632 -10.20177 -9.26371 -9.06970 -8.76314 -8.54842 -8.39297 -7.64235 -6.03298 -4.06424 1.37183 1.56899 3.28287 3.36240 3.38883 3.74414 4.35439 4.42588 4.80734 4.88529 4.98898 5.12622 5.15896 5.25017 5.27397 5.39458 5.62690 5.66329 5.84804 5.92810 5.98727 6.16310 6.22291 6.23001 6.31294 6.52657 6.53917 6.65116 6.83640 6.93749 6.95221 7.12265 7.38961 7.51705 7.63491 7.96162 8.04862 8.26911 8.36887 8.99769 9.57878 11.07658 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.004967 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.799782 B = 5635.350367 C = 6618.831129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.030 0.970 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.677 5.677 14 C 0.093 3.907 15 C -0.062 4.062 16 C -0.103 4.103 17 C -0.103 4.103 18 C -0.105 4.105 19 C 0.119 3.881 20 O -0.569 6.569 21 C -0.100 4.100 22 C -0.116 4.116 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.356 0.644 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.377 0.623 37 H 0.119 0.881 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 -0.092 -18.459 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.048 0.952 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.311 5.311 14 C -0.036 4.036 15 C -0.062 4.062 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.105 4.105 19 C 0.042 3.958 20 O -0.374 6.374 21 C -0.118 4.118 22 C -0.134 4.134 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.177 0.823 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.223 0.777 37 H 0.137 0.863 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.761 -0.012 -17.989 18.075 hybrid contribution 2.085 0.103 0.041 2.088 sum 0.324 0.092 -17.948 17.951 Atomic orbital electron populations 1.21793 0.96687 1.01342 0.99478 1.21644 0.93402 0.95915 0.91324 0.95240 1.19286 0.95431 0.96225 0.90777 1.21205 0.92233 1.34421 1.08302 0.92997 1.24983 0.98221 0.95169 0.95704 1.69972 1.35398 1.35643 1.11957 0.86588 0.86003 0.77789 0.77923 1.19854 1.21040 1.20950 1.60636 1.34907 1.31621 1.03922 1.20942 0.99887 0.93450 0.89286 1.20000 0.93206 0.97210 0.95793 1.20998 0.99783 0.97183 0.94166 1.20963 0.94548 0.99232 0.97345 1.19509 0.93863 1.01025 0.96085 1.20977 0.99401 0.90819 0.84605 1.86589 1.89835 1.40249 1.20739 1.20951 0.99171 0.97020 0.94664 1.21115 0.95341 0.99678 0.97280 0.92629 0.93290 0.94512 0.95997 0.95570 0.92998 0.82323 0.94894 0.90975 0.85841 0.86363 0.92894 0.92903 0.77670 0.86324 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.41 37.16 0.35 -2.08 16 2 C 0.09 1.80 2.59 -67.71 -0.18 1.63 16 3 H 0.03 0.63 7.80 -51.93 -0.40 0.22 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.38 8.12 -34.44 -0.28 -14.66 16 6 H 0.05 1.39 7.49 -52.49 -0.39 0.99 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 N -0.68 -13.18 6.30 -107.99 -0.68 -13.86 16 14 C 0.09 1.53 5.61 -4.97 -0.03 1.51 16 15 C -0.06 -0.95 5.39 -104.62 -0.56 -1.51 16 16 C -0.10 -1.45 9.70 -39.59 -0.38 -1.84 16 17 C -0.10 -1.34 9.70 -39.59 -0.38 -1.72 16 18 C -0.10 -1.36 5.51 -104.62 -0.58 -1.93 16 19 C 0.12 1.18 7.17 36.01 0.26 1.44 16 20 O -0.57 -5.79 13.64 -35.23 -0.48 -6.28 16 21 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 22 C -0.12 -1.72 9.70 -39.58 -0.38 -2.11 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.36 7.61 7.20 -39.29 -0.28 7.32 16 30 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 31 H 0.07 1.10 7.38 -51.93 -0.38 0.72 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.38 1.84 9.12 45.56 0.42 2.26 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -31.25 320.45 -8.60 -39.85 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.21 Total: 5.84 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.78 Total: -21.01 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.06 Total: -39.63 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.48 Total: -6.28 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.25 -8.60 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.252 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds