Wall clock time and date at job start Mon Mar 30 2020 21:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00146 * 2 1 4 4 H 1.48500 * 109.47222 * 240.00108 * 3 2 1 5 5 H 1.48504 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47088 * 119.99969 * 3 2 1 7 7 C 1.37880 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99858 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.78034 * 61.78998 * 9 7 2 11 11 C 1.55158 * 110.72412 * 298.54782 * 9 7 2 12 12 C 1.54909 * 101.61642 * 206.15548 * 11 9 7 13 13 N 1.47423 * 104.83351 * 36.99324 * 12 11 9 14 14 C 1.34782 * 125.64708 * 155.90981 * 13 12 11 15 15 O 1.21276 * 119.99741 * 179.97438 * 14 13 12 16 16 C 1.50693 * 119.99974 * 359.96859 * 14 13 12 17 17 H 1.08998 * 115.55226 * 325.58766 * 16 14 13 18 18 C 1.53004 * 117.49621 * 111.25526 * 16 14 13 19 19 C 1.53004 * 117.49621 * 179.91400 * 16 14 13 20 20 H 1.09004 * 117.49426 * 145.01912 * 19 16 14 21 21 C 1.52994 * 117.49948 * 0.02562 * 19 16 14 22 22 C 1.53004 * 117.49890 * 128.62057 * 21 19 16 23 23 C 1.52998 * 117.50076 * 59.99528 * 21 19 16 24 24 C 1.47016 * 108.70440 * 335.86643 * 13 12 11 25 25 H 0.97003 * 120.00226 * 359.97438 * 1 2 3 26 26 H 1.09002 * 111.00366 * 88.06066 * 11 9 7 27 27 H 1.09002 * 111.00429 * 324.25128 * 11 9 7 28 28 H 1.09000 * 110.36449 * 155.82966 * 12 11 9 29 29 H 1.09002 * 110.36898 * 278.14897 * 12 11 9 30 30 H 1.08998 * 117.50049 * 214.97341 * 18 16 14 31 31 H 1.08997 * 117.50080 * 359.97438 * 18 16 14 32 32 H 1.09002 * 115.54747 * 274.32922 * 21 19 16 33 33 H 1.08993 * 117.49650 * 0.02562 * 22 21 19 34 34 H 1.09006 * 117.49605 * 145.01953 * 22 21 19 35 35 H 1.09005 * 117.50007 * 214.97789 * 23 21 19 36 36 H 1.09006 * 117.49873 * 0.02562 * 23 21 19 37 37 H 1.09000 * 109.88531 * 120.47268 * 24 13 12 38 38 H 1.08996 * 109.88671 * 241.49081 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6400 -2.5929 -0.8984 11 6 0.3763 -2.6281 1.2745 12 6 0.2717 -4.1661 1.4268 13 7 1.5926 -4.6766 1.0170 14 6 2.1327 -5.8519 1.3961 15 8 3.2317 -6.1716 0.9952 16 6 1.3710 -6.7685 2.3183 17 1 0.7539 -6.2739 3.0684 18 6 0.8557 -8.0866 1.7369 19 6 2.0372 -8.0890 2.7104 20 1 1.8580 -8.4632 3.7183 21 6 3.4258 -8.3773 2.1365 22 6 4.5272 -8.7784 3.1199 23 6 4.5474 -7.3924 2.4721 24 6 2.2228 -3.6920 0.1254 25 1 -0.4850 0.8400 0.0004 26 1 -0.6067 -2.1829 1.1207 27 1 0.8738 -2.1831 2.1363 28 1 0.0675 -4.4316 2.4640 29 1 -0.5067 -4.5600 0.7733 30 1 -0.1001 -8.4595 2.1049 31 1 1.0673 -8.2906 0.6873 32 1 3.4398 -8.8386 1.1490 33 1 4.2624 -8.8372 4.1756 34 1 5.2661 -9.5039 2.7795 35 1 5.2997 -7.2060 1.7056 36 1 4.2961 -6.5390 3.1021 37 1 3.1674 -3.3560 0.5529 38 1 2.3967 -4.1369 -0.8543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699105287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:07 Heat of formation + Delta-G solvation = 2.787321 kcal Electronic energy + Delta-G solvation = -18379.910696 eV Core-core repulsion = 15609.321554 eV Total energy + Delta-G solvation = -2770.589142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27137 -39.27483 -37.62458 -35.92891 -34.91841 -32.06501 -30.09782 -27.40362 -25.36530 -24.42968 -23.50897 -22.89669 -21.66920 -21.11915 -19.53318 -18.67219 -17.95100 -16.92991 -16.52402 -16.40153 -16.28027 -15.32829 -15.27982 -14.45963 -14.32041 -14.22776 -13.71536 -13.24982 -13.07703 -12.99638 -12.89768 -12.67998 -12.35903 -12.30341 -12.18455 -11.90310 -11.80354 -11.57665 -11.34196 -10.97173 -10.94745 -10.68610 -10.51623 -9.97781 -9.44952 -8.16793 -6.26508 1.42924 1.43039 1.51005 1.62827 2.13437 2.43302 2.75640 3.14796 3.16745 3.55697 3.84723 3.92370 4.01645 4.09847 4.29817 4.30945 4.33552 4.43975 4.48410 4.51777 4.59495 4.73629 4.81272 4.86739 4.88883 4.99704 5.13266 5.16112 5.27799 5.28227 5.35953 5.41030 5.42082 5.58631 5.77849 5.86695 6.27224 6.74394 6.79717 7.32497 7.41090 8.91915 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.004970 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.783615 B = 5632.211200 C = 6093.896492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.048 0.952 9 C 0.038 3.962 10 H 0.016 0.984 11 C -0.099 4.099 12 C 0.106 3.894 13 N -0.615 5.615 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.194 4.194 17 H 0.140 0.860 18 C -0.129 4.129 19 C -0.087 4.087 20 H 0.139 0.861 21 C -0.116 4.116 22 C -0.174 4.174 23 C -0.139 4.139 24 C 0.125 3.875 25 H 0.264 0.736 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -15.293 7.457 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.067 0.933 9 C 0.019 3.981 10 H 0.034 0.966 11 C -0.138 4.138 12 C -0.016 4.016 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.444 6.444 16 C -0.215 4.215 17 H 0.158 0.842 18 C -0.166 4.166 19 C -0.106 4.106 20 H 0.157 0.843 21 C -0.134 4.134 22 C -0.211 4.211 23 C -0.176 4.176 24 C 0.002 3.998 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.135 -15.405 7.259 17.030 hybrid contribution 0.526 1.552 -0.507 1.715 sum 0.391 -13.853 6.752 15.416 Atomic orbital electron populations 1.70018 1.06881 1.27610 1.50333 1.25614 0.95713 1.01977 0.94342 0.85694 0.78504 0.79252 0.78699 1.19938 1.20486 1.19914 1.21287 0.92761 0.91575 1.52103 0.93330 1.19632 0.92819 0.91105 0.94555 0.96615 1.22495 1.00663 0.92470 0.98134 1.22494 0.83823 0.94543 1.00759 1.48775 1.19751 1.18426 1.47858 1.20080 0.85622 0.80327 0.81278 1.90694 1.21433 1.74458 1.57766 1.22269 1.05785 0.90358 1.03079 0.84212 1.23122 0.99436 0.94990 0.99095 1.21966 0.91803 0.96216 1.00569 0.84285 1.21488 0.89385 1.04056 0.98468 1.23301 1.01086 0.98072 0.98639 1.22324 1.01113 0.92435 1.01757 1.21905 0.96803 0.89189 0.91869 0.92690 0.91156 0.93933 0.88845 0.90805 0.84485 0.89667 0.89486 0.87595 0.88312 0.91389 0.91502 0.94277 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 12.11 21.45 0.26 -50.11 16 2 C 0.02 1.28 5.33 84.66 0.45 1.74 16 3 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -29.56 8.50 25.60 0.22 -29.34 16 8 H 0.05 2.68 7.57 -2.91 -0.02 2.66 16 9 C 0.04 1.88 2.88 -10.33 -0.03 1.85 16 10 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 11 C -0.10 -4.31 5.75 31.99 0.18 -4.13 16 12 C 0.11 3.57 6.69 86.86 0.58 4.15 16 13 N -0.62 -23.53 3.33 -811.70 -2.70 -26.22 16 14 C 0.54 19.00 7.47 87.65 0.65 19.65 16 15 O -0.56 -22.93 11.86 -3.02 -0.04 -22.97 16 16 C -0.19 -4.80 5.52 -11.54 -0.06 -4.87 16 17 H 0.14 2.87 7.07 -2.39 -0.02 2.85 16 18 C -0.13 -2.51 9.96 30.62 0.31 -2.21 16 19 C -0.09 -1.84 5.87 -10.77 -0.06 -1.90 16 20 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 21 C -0.12 -2.95 4.48 -10.79 -0.05 -3.00 16 22 C -0.17 -3.72 10.25 30.60 0.31 -3.41 16 23 C -0.14 -4.10 7.08 30.60 0.22 -3.88 16 24 C 0.13 5.66 6.46 86.75 0.56 6.22 16 25 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 26 H 0.07 3.23 7.54 -2.39 -0.02 3.21 16 27 H 0.04 1.95 8.04 -2.39 -0.02 1.93 16 28 H 0.09 2.52 7.01 -2.39 -0.02 2.50 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.07 2.25 8.06 -2.38 -0.02 2.23 16 36 H 0.07 2.17 7.96 -2.38 -0.02 2.15 16 37 H 0.04 1.89 7.66 -2.39 -0.02 1.88 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.44 306.88 3.86 -58.59 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.03 Total: 14.88 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 3.28 Total: -19.13 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.44 Total: -76.34 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -62.44 3.86 -58.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.373 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds