Wall clock time and date at job start Mon Mar 30 2020 21:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48493 * 109.47187 * 270.00272 * 3 2 1 5 5 H 1.48501 * 109.47041 * 30.00569 * 3 2 1 6 6 H 1.48495 * 109.47038 * 150.00003 * 3 2 1 7 7 C 1.37874 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.91976 * 62.44721 * 9 7 2 11 11 C 1.55158 * 111.00552 * 298.53957 * 9 7 2 12 12 C 1.54314 * 102.94426 * 206.43075 * 11 9 7 13 13 N 1.47022 * 107.27471 * 22.18844 * 12 11 9 14 14 C 1.34772 * 125.64988 * 181.03611 * 13 12 11 15 15 O 1.21285 * 120.00309 * 180.02562 * 14 13 12 16 16 C 1.50708 * 120.00169 * 0.03176 * 14 13 12 17 17 H 1.08994 * 115.54642 * 78.70584 * 16 14 13 18 18 C 1.53002 * 117.49598 * 293.03332 * 16 14 13 19 19 C 1.52998 * 117.49789 * 224.41176 * 16 14 13 20 20 H 1.08999 * 117.49657 * 214.97519 * 19 16 14 21 21 C 1.53001 * 117.49967 * 0.02562 * 19 16 14 22 22 C 1.52998 * 117.49804 * 253.84893 * 21 19 16 23 23 C 1.52997 * 60.00243 * 252.51520 * 22 21 19 24 24 C 1.47426 * 108.69976 * 1.06525 * 13 12 11 25 25 H 0.97003 * 120.00212 * 359.97438 * 1 2 3 26 26 H 1.09004 * 110.71715 * 88.06076 * 11 9 7 27 27 H 1.09008 * 110.71839 * 324.79436 * 11 9 7 28 28 H 1.09000 * 109.88264 * 141.61234 * 12 11 9 29 29 H 1.09010 * 109.88425 * 262.77459 * 12 11 9 30 30 H 1.08991 * 117.49972 * 0.02562 * 18 16 14 31 31 H 1.09000 * 117.49330 * 144.99511 * 18 16 14 32 32 H 1.08999 * 115.54792 * 39.55989 * 21 19 16 33 33 H 1.08999 * 117.49737 * 0.02562 * 22 21 19 34 34 H 1.09001 * 117.49809 * 145.02241 * 22 21 19 35 35 H 1.09002 * 117.49506 * 252.51681 * 23 22 21 36 36 H 1.08999 * 117.50381 * 107.48995 * 23 22 21 37 37 H 1.09006 * 110.36399 * 217.02611 * 24 13 12 38 38 H 1.09003 * 110.45710 * 94.75427 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6489 -2.6000 -0.9046 11 6 0.3731 -2.6356 1.2703 12 6 0.2579 -4.1641 1.4485 13 7 1.3940 -4.7729 0.7412 14 6 1.6413 -6.0941 0.6430 15 8 2.6134 -6.4853 0.0322 16 6 0.7100 -7.0854 1.2920 17 1 -0.2134 -7.2876 0.7494 18 6 0.6494 -7.1016 2.8207 19 6 1.3403 -8.2420 2.0703 20 1 0.8315 -9.2054 2.0400 21 6 2.8679 -8.3033 2.1308 22 6 3.5663 -9.3680 1.2826 23 6 3.4998 -9.5238 2.8031 24 6 2.2181 -3.6987 0.1578 25 1 -0.4850 0.8400 0.0004 26 1 -0.6091 -2.1907 1.1105 27 1 0.8672 -2.1832 2.1303 28 1 0.3013 -4.4181 2.5076 29 1 -0.6792 -4.5179 1.0184 30 1 1.2827 -6.3950 3.3570 31 1 -0.3141 -7.3144 3.2839 32 1 3.3725 -7.3446 2.2514 33 1 2.9375 -10.0245 0.6811 34 1 4.5306 -9.1099 0.8448 35 1 4.4204 -9.3681 3.3657 36 1 2.8273 -10.2830 3.2024 37 1 2.6071 -4.0042 -0.8136 38 1 3.0368 -3.4394 0.8290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699105294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:10 Heat of formation + Delta-G solvation = 8.474959 kcal Electronic energy + Delta-G solvation = -18247.928308 eV Core-core repulsion = 15477.585801 eV Total energy + Delta-G solvation = -2770.342507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87492 -37.87151 -36.45751 -35.02666 -32.97975 -30.25861 -28.39048 -25.61461 -23.89908 -23.52312 -22.27461 -21.66183 -20.43580 -19.67285 -18.28995 -16.66882 -16.49888 -15.84172 -15.34084 -14.72087 -14.57779 -14.32645 -13.65549 -13.15594 -12.85643 -12.55459 -12.34127 -11.71046 -11.61248 -11.53033 -11.35016 -11.20957 -11.10820 -10.99815 -10.83083 -10.73607 -10.47621 -10.02499 -9.75664 -9.51209 -9.44897 -9.13533 -8.97029 -8.48307 -7.93986 -6.11448 -4.15145 3.07521 3.26916 3.33369 3.34448 3.38276 3.71816 4.17935 4.38012 4.44729 4.81760 4.84464 5.02186 5.21816 5.26305 5.28975 5.31261 5.40729 5.65244 5.68989 5.71688 5.88477 5.93200 5.97938 6.07929 6.09374 6.18462 6.27180 6.36208 6.40303 6.63029 6.85554 7.03053 7.14146 7.48807 7.70836 7.88685 8.18639 8.28707 8.70783 8.86533 9.50024 10.98289 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.043374 B = 0.004694 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.390203 B = 5963.423756 C = 6265.895665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.037 0.963 11 C -0.110 4.110 12 C 0.098 3.902 13 N -0.608 5.608 14 C 0.549 3.451 15 O -0.545 6.545 16 C -0.172 4.172 17 H 0.126 0.874 18 C -0.158 4.158 19 C -0.093 4.093 20 H 0.109 0.891 21 C -0.110 4.110 22 C -0.161 4.161 23 C -0.186 4.186 24 C 0.108 3.892 25 H 0.261 0.739 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -13.975 6.321 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.026 3.974 10 H 0.056 0.944 11 C -0.148 4.148 12 C -0.025 4.025 13 N -0.340 5.340 14 C 0.336 3.664 15 O -0.424 6.424 16 C -0.192 4.192 17 H 0.144 0.856 18 C -0.195 4.195 19 C -0.111 4.111 20 H 0.127 0.873 21 C -0.128 4.128 22 C -0.198 4.198 23 C -0.223 4.223 24 C -0.014 4.014 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.006 -14.126 5.995 15.345 hybrid contribution 0.204 1.023 -0.014 1.043 sum 0.210 -13.102 5.981 14.404 Atomic orbital electron populations 1.69946 1.05920 1.26742 1.50035 1.24945 0.94872 0.99125 0.94715 0.86557 0.79863 0.83193 0.78197 1.20612 1.21205 1.19836 1.20959 0.92985 0.89862 1.51595 0.92239 1.19830 0.92281 0.91169 0.94094 0.94444 1.22606 1.02671 0.89071 1.00461 1.22250 0.88192 0.96974 0.95108 1.48725 1.27543 1.04878 1.52869 1.19193 0.85301 0.81383 0.80492 1.90664 1.29767 1.78611 1.43331 1.22220 1.01516 1.00158 0.95353 0.85579 1.23063 1.02564 1.01348 0.92520 1.21748 0.93337 0.93552 1.02470 0.87311 1.21561 0.92092 0.94548 1.04633 1.22759 1.02271 1.02085 0.92711 1.22985 1.02659 1.00763 0.95915 1.22583 0.94800 0.86903 0.97066 0.92887 0.89947 0.92214 0.92863 0.92736 0.88300 0.87955 0.87928 0.89104 0.88943 0.89101 0.89082 0.92183 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 12.13 55.43 0.67 -23.64 16 2 C 0.07 1.75 5.34 -17.82 -0.10 1.65 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.64 8.55 -34.44 -0.29 -13.94 16 8 H 0.06 1.56 7.79 -52.49 -0.41 1.16 16 9 C 0.05 1.09 2.96 -89.62 -0.27 0.83 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.36 5.65 -24.90 -0.14 -2.50 16 12 C 0.10 1.73 6.29 -3.07 -0.02 1.71 16 13 N -0.61 -11.75 3.33 -170.51 -0.57 -12.32 16 14 C 0.55 10.13 6.79 -10.98 -0.07 10.06 16 15 O -0.55 -11.64 15.68 5.55 0.09 -11.55 16 16 C -0.17 -2.39 5.44 -91.77 -0.50 -2.89 16 17 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 18 C -0.16 -1.82 9.04 -26.73 -0.24 -2.06 16 19 C -0.09 -1.13 5.84 -90.62 -0.53 -1.65 16 20 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.11 -1.47 4.21 -90.62 -0.38 -1.85 16 22 C -0.16 -2.01 10.25 -26.73 -0.27 -2.28 16 23 C -0.19 -2.01 10.25 -26.73 -0.27 -2.28 16 24 C 0.11 2.36 6.35 -2.53 -0.02 2.34 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.08 1.88 7.55 -51.93 -0.39 1.49 16 27 H 0.06 1.33 8.03 -51.92 -0.42 0.91 16 28 H 0.05 0.83 7.40 -51.93 -0.38 0.44 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.10 1.23 8.06 -51.93 -0.42 0.82 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.62 7.46 -51.93 -0.39 1.23 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 38 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 LS Contribution 312.88 15.07 4.71 4.71 Total: -1.00 -28.69 312.88 -9.40 -38.09 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.18 Total: 1.96 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -3.10 Total: -12.88 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.10 Total: -35.96 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.69 -9.40 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.565 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds