Wall clock time and date at job start Mon Mar 30 2020 21:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48493 * 109.47187 * 270.00272 * 3 2 1 5 5 H 1.48501 * 109.47041 * 30.00569 * 3 2 1 6 6 H 1.48495 * 109.47038 * 150.00003 * 3 2 1 7 7 C 1.37874 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.91976 * 62.44721 * 9 7 2 11 11 C 1.55158 * 111.00552 * 298.53957 * 9 7 2 12 12 C 1.54314 * 102.94426 * 206.43075 * 11 9 7 13 13 N 1.47022 * 107.27471 * 22.18844 * 12 11 9 14 14 C 1.34772 * 125.64988 * 181.03611 * 13 12 11 15 15 O 1.21285 * 120.00309 * 180.02562 * 14 13 12 16 16 C 1.50708 * 120.00169 * 0.03176 * 14 13 12 17 17 H 1.08994 * 115.54642 * 78.70584 * 16 14 13 18 18 C 1.53002 * 117.49598 * 293.03332 * 16 14 13 19 19 C 1.52998 * 117.49789 * 224.41176 * 16 14 13 20 20 H 1.08999 * 117.49657 * 214.97519 * 19 16 14 21 21 C 1.53001 * 117.49967 * 0.02562 * 19 16 14 22 22 C 1.52998 * 117.49804 * 253.84893 * 21 19 16 23 23 C 1.52997 * 60.00243 * 252.51520 * 22 21 19 24 24 C 1.47426 * 108.69976 * 1.06525 * 13 12 11 25 25 H 0.97003 * 120.00212 * 359.97438 * 1 2 3 26 26 H 1.09004 * 110.71715 * 88.06076 * 11 9 7 27 27 H 1.09008 * 110.71839 * 324.79436 * 11 9 7 28 28 H 1.09000 * 109.88264 * 141.61234 * 12 11 9 29 29 H 1.09010 * 109.88425 * 262.77459 * 12 11 9 30 30 H 1.08991 * 117.49972 * 0.02562 * 18 16 14 31 31 H 1.09000 * 117.49330 * 144.99511 * 18 16 14 32 32 H 1.08999 * 115.54792 * 39.55989 * 21 19 16 33 33 H 1.08999 * 117.49737 * 0.02562 * 22 21 19 34 34 H 1.09001 * 117.49809 * 145.02241 * 22 21 19 35 35 H 1.09002 * 117.49506 * 252.51681 * 23 22 21 36 36 H 1.08999 * 117.50381 * 107.48995 * 23 22 21 37 37 H 1.09006 * 110.36399 * 217.02611 * 24 13 12 38 38 H 1.09003 * 110.45710 * 94.75427 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6489 -2.6000 -0.9046 11 6 0.3731 -2.6356 1.2703 12 6 0.2579 -4.1641 1.4485 13 7 1.3940 -4.7729 0.7412 14 6 1.6413 -6.0941 0.6430 15 8 2.6134 -6.4853 0.0322 16 6 0.7100 -7.0854 1.2920 17 1 -0.2134 -7.2876 0.7494 18 6 0.6494 -7.1016 2.8207 19 6 1.3403 -8.2420 2.0703 20 1 0.8315 -9.2054 2.0400 21 6 2.8679 -8.3033 2.1308 22 6 3.5663 -9.3680 1.2826 23 6 3.4998 -9.5238 2.8031 24 6 2.2181 -3.6987 0.1578 25 1 -0.4850 0.8400 0.0004 26 1 -0.6091 -2.1907 1.1105 27 1 0.8672 -2.1832 2.1303 28 1 0.3013 -4.4181 2.5076 29 1 -0.6792 -4.5179 1.0184 30 1 1.2827 -6.3950 3.3570 31 1 -0.3141 -7.3144 3.2839 32 1 3.3725 -7.3446 2.2514 33 1 2.9375 -10.0245 0.6811 34 1 4.5306 -9.1099 0.8448 35 1 4.4204 -9.3681 3.3657 36 1 2.8273 -10.2830 3.2024 37 1 2.6071 -4.0042 -0.8136 38 1 3.0368 -3.4394 0.8290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699105294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:09 Heat of formation + Delta-G solvation = -6.500982 kcal Electronic energy + Delta-G solvation = -18248.577714 eV Core-core repulsion = 15477.585801 eV Total energy + Delta-G solvation = -2770.991913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23647 -39.14937 -37.96744 -36.05672 -34.91634 -32.05176 -30.08774 -27.35640 -25.35970 -24.56130 -23.33936 -22.94131 -21.72293 -21.30927 -19.70287 -18.48235 -17.90613 -16.97847 -16.83348 -16.51394 -16.13655 -15.55560 -14.72937 -14.64163 -14.41396 -14.31227 -13.72544 -13.34041 -13.06630 -12.98841 -12.89688 -12.63743 -12.47799 -12.29319 -12.24950 -12.11510 -11.77800 -11.56576 -11.34604 -11.02481 -10.93468 -10.71062 -10.51703 -10.30562 -9.52907 -8.16554 -6.26827 1.42666 1.44248 1.53838 1.65855 2.06305 2.43491 2.59856 3.15295 3.22147 3.44745 3.71966 3.88930 3.98902 4.08810 4.22052 4.30726 4.36087 4.39800 4.41592 4.48767 4.50473 4.75207 4.78198 4.80904 4.89793 4.99802 5.06080 5.09959 5.20939 5.27198 5.28984 5.37254 5.41026 5.57685 5.77360 5.86505 6.26272 6.70481 6.78912 7.23001 7.41291 8.92571 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.043374 B = 0.004694 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.390203 B = 5963.423756 C = 6265.895665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.039 3.961 10 H 0.008 0.992 11 C -0.100 4.100 12 C 0.110 3.890 13 N -0.613 5.613 14 C 0.544 3.456 15 O -0.582 6.582 16 C -0.189 4.189 17 H 0.148 0.852 18 C -0.138 4.138 19 C -0.085 4.085 20 H 0.139 0.861 21 C -0.134 4.134 22 C -0.174 4.174 23 C -0.158 4.158 24 C 0.118 3.882 25 H 0.264 0.736 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.044 0.956 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 -15.434 7.982 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.027 0.973 11 C -0.139 4.139 12 C -0.012 4.012 13 N -0.345 5.345 14 C 0.334 3.666 15 O -0.463 6.463 16 C -0.209 4.209 17 H 0.166 0.834 18 C -0.175 4.175 19 C -0.103 4.103 20 H 0.157 0.843 21 C -0.152 4.152 22 C -0.211 4.211 23 C -0.195 4.195 24 C -0.004 4.004 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.062 0.938 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.024 -15.596 7.668 17.409 hybrid contribution 0.583 1.471 -0.575 1.683 sum -0.441 -14.125 7.093 15.812 Atomic orbital electron populations 1.70040 1.06991 1.27560 1.50387 1.25644 0.95698 1.02093 0.94293 0.85598 0.78760 0.79377 0.78174 1.20386 1.20486 1.19475 1.21250 0.92969 0.91354 1.52036 0.92922 1.19728 0.92782 0.91310 0.94150 0.97347 1.22373 1.00906 0.92110 0.98472 1.22197 0.88363 0.93789 0.96891 1.48797 1.27605 1.05025 1.53121 1.20085 0.85458 0.81329 0.79748 1.90640 1.31658 1.79060 1.44904 1.22218 1.01514 1.00159 0.97034 0.83424 1.23190 1.03779 1.00240 0.90326 1.21911 0.92466 0.94593 1.01345 0.84334 1.21533 0.93186 0.93825 1.06658 1.22799 1.01769 1.02266 0.94302 1.23063 1.02778 0.99206 0.94423 1.22220 0.94529 0.87293 0.96389 0.92715 0.91430 0.93242 0.89816 0.90637 0.89505 0.84451 0.91426 0.88181 0.90467 0.88590 0.86574 0.93752 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.47 12.13 21.45 0.26 -50.21 16 2 C 0.02 1.23 5.34 84.65 0.45 1.68 16 3 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.25 8.55 25.60 0.22 -29.03 16 8 H 0.05 2.86 7.79 -2.91 -0.02 2.83 16 9 C 0.04 1.97 2.96 -10.15 -0.03 1.94 16 10 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 11 C -0.10 -4.34 5.65 31.78 0.18 -4.16 16 12 C 0.11 3.71 6.29 86.73 0.55 4.26 16 13 N -0.61 -23.63 3.33 -811.77 -2.70 -26.33 16 14 C 0.54 19.85 6.79 87.66 0.60 20.45 16 15 O -0.58 -25.39 15.68 -3.04 -0.05 -25.44 16 16 C -0.19 -4.76 5.44 -11.54 -0.06 -4.83 16 17 H 0.15 3.12 8.14 -2.39 -0.02 3.10 16 18 C -0.14 -2.67 9.04 30.60 0.28 -2.39 16 19 C -0.08 -1.79 5.84 -10.79 -0.06 -1.86 16 20 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 21 C -0.13 -3.40 4.21 -10.79 -0.05 -3.45 16 22 C -0.17 -4.17 10.25 30.59 0.31 -3.86 16 23 C -0.16 -3.01 10.25 30.59 0.31 -2.69 16 24 C 0.12 5.36 6.35 86.86 0.55 5.91 16 25 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 26 H 0.07 3.11 7.55 -2.38 -0.02 3.10 16 27 H 0.05 2.21 8.03 -2.38 -0.02 2.19 16 28 H 0.08 2.36 7.40 -2.39 -0.02 2.34 16 29 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 31 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.18 7.46 -2.39 -0.02 2.16 16 33 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 2.10 8.04 -2.38 -0.02 2.08 16 38 H 0.05 2.34 8.03 -2.39 -0.02 2.32 16 Total: -1.00 -64.02 312.88 3.81 -60.22 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.02 Total: 15.15 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 3.24 Total: -18.04 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -2.44 Total: -76.54 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -64.02 3.81 -60.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.717 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds