Wall clock time and date at job start Mon Mar 30 2020 21:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47253 * 103.38788 * 3 2 1 5 5 C 1.37100 * 120.00066 * 89.99338 * 4 3 2 6 6 H 1.08002 * 119.99713 * 55.84039 * 5 4 3 7 7 C 1.38944 * 120.00328 * 235.83859 * 5 4 3 8 8 N 1.31413 * 119.99956 * 19.96171 * 7 5 4 9 9 Si 1.86801 * 120.00365 * 199.96024 * 7 5 4 10 10 H 1.48503 * 109.46941 * 240.00401 * 9 7 5 11 11 H 1.48495 * 109.47164 * 120.00114 * 9 7 5 12 12 H 1.48500 * 109.46797 * 359.97438 * 9 7 5 13 13 C 1.34780 * 119.99744 * 270.00085 * 4 3 2 14 14 O 1.21294 * 120.00133 * 356.30023 * 13 4 3 15 15 C 1.50699 * 119.99858 * 176.30615 * 13 4 3 16 16 H 1.09008 * 115.55126 * 307.64413 * 15 13 4 17 17 C 1.53001 * 117.49982 * 161.97661 * 15 13 4 18 18 C 1.52995 * 117.50208 * 93.31409 * 15 13 4 19 19 H 1.09005 * 117.50150 * 214.98136 * 18 15 13 20 20 C 1.52999 * 117.50002 * 359.97438 * 18 15 13 21 21 C 1.53006 * 109.47251 * 66.50504 * 20 18 15 22 22 C 1.52994 * 109.47635 * 186.50695 * 20 18 15 23 23 C 1.53001 * 109.46784 * 306.50886 * 20 18 15 24 24 H 4.40649 * 5.51351 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.47178 * 343.38454 * 3 2 1 26 26 H 1.09006 * 109.46704 * 223.38850 * 3 2 1 27 27 H 0.97005 * 120.00130 * 357.08712 * 8 7 5 28 28 H 1.08993 * 117.49760 * 0.02562 * 17 15 13 29 29 H 1.08999 * 117.49658 * 145.01644 * 17 15 13 30 30 H 1.08995 * 109.46724 * 64.09750 * 21 20 18 31 31 H 1.09000 * 109.47217 * 184.09863 * 21 20 18 32 32 H 1.09008 * 109.46819 * 304.09352 * 21 20 18 33 33 H 1.09007 * 109.46833 * 59.99555 * 22 20 18 34 34 H 1.08998 * 109.47292 * 179.97438 * 22 20 18 35 35 H 1.08997 * 109.47178 * 300.00168 * 22 20 18 36 36 H 1.09003 * 109.47682 * 76.49912 * 23 20 18 37 37 H 1.09003 * 109.47336 * 196.49480 * 23 20 18 38 38 H 1.08995 * 109.47279 * 316.49126 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.3207 -1.3436 5 6 3.3621 1.6255 -1.6975 6 1 4.0298 2.2362 -1.1079 7 6 2.7340 2.1622 -2.8146 8 7 1.6539 1.5913 -3.2989 9 14 3.4247 3.6953 -3.6282 10 1 2.4045 4.7740 -3.5981 11 1 3.7812 3.3902 -5.0371 12 1 4.6372 4.1409 -2.8956 13 6 3.3593 -0.6677 -2.2320 14 8 3.2222 -1.8257 -1.8984 15 6 3.7815 -0.3339 -3.6396 16 1 3.1474 0.3814 -4.1635 17 6 4.4224 -1.4491 -4.4682 18 6 5.2817 -0.2987 -3.9377 19 1 5.6346 0.4395 -4.6579 20 6 6.2387 -0.6045 -2.7837 21 6 6.0770 -2.0660 -2.3607 22 6 7.6793 -0.3614 -3.2377 23 6 5.9165 0.3081 -1.5987 24 1 -1.0500 0.0002 0.0002 25 1 3.0099 -0.9840 0.2939 26 1 3.0090 0.7477 0.7060 27 1 1.3194 0.7716 -2.9025 28 1 4.5383 -2.4242 -3.9953 29 1 4.2102 -1.4672 -5.5371 30 1 6.3762 -2.7171 -3.1820 31 1 6.7051 -2.2645 -1.4922 32 1 5.0344 -2.2574 -2.1064 33 1 7.7945 0.6798 -3.5391 34 1 8.3610 -0.5789 -2.4154 35 1 7.9088 -1.0115 -4.0820 36 1 5.0221 -0.0555 -1.0926 37 1 6.7542 0.3072 -0.9012 38 1 5.7438 1.3226 -1.9577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699767927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:15 Heat of formation + Delta-G solvation = 41.373856 kcal Electronic energy + Delta-G solvation = -19840.115398 eV Core-core repulsion = 17071.199494 eV Total energy + Delta-G solvation = -2768.915904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73534 -38.69461 -36.98063 -35.01496 -34.25460 -32.90027 -28.79281 -28.09658 -27.64387 -26.60919 -24.21514 -23.59698 -21.27335 -19.84770 -19.21261 -18.59939 -17.54205 -16.99734 -16.47935 -15.92505 -15.76944 -15.31326 -15.02826 -14.41003 -14.24787 -14.02198 -13.84295 -13.65757 -13.18784 -12.97987 -12.64664 -12.46885 -12.38424 -11.98255 -11.88262 -11.76770 -11.69175 -11.48406 -11.31960 -11.08558 -11.02564 -10.58853 -10.55325 -10.20163 -9.48204 -8.64820 -6.21879 1.56101 1.62095 1.65607 1.82632 1.90761 2.01557 2.48921 2.89861 3.07482 3.17006 3.62045 3.83376 4.01693 4.11515 4.21421 4.39420 4.44999 4.51793 4.58651 4.76140 4.78006 4.86170 4.92653 4.96687 5.04737 5.05281 5.13684 5.23806 5.29734 5.37171 5.39998 5.51177 5.70937 5.79603 5.83151 6.13014 6.33424 6.69999 7.19207 7.44231 7.90136 8.62261 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.012559 C = 0.009183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.518254 B = 2229.006478 C = 3048.428825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.217 4.217 3 C 0.202 3.798 4 N -0.459 5.459 5 C -0.408 4.408 6 H 0.081 0.919 7 C -0.013 4.013 8 N -0.896 5.896 9 Si 1.110 2.890 10 H -0.288 1.288 11 H -0.274 1.274 12 H -0.257 1.257 13 C 0.540 3.460 14 O -0.618 6.618 15 C -0.185 4.185 16 H 0.120 0.880 17 C -0.165 4.165 18 C -0.099 4.099 19 H 0.114 0.886 20 C -0.038 4.038 21 C -0.167 4.167 22 C -0.128 4.128 23 C -0.152 4.152 24 H 0.245 0.755 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.258 0.742 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -0.116 -0.062 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.219 4.219 3 C 0.081 3.919 4 N -0.179 5.179 5 C -0.535 4.535 6 H 0.099 0.901 7 C -0.216 4.216 8 N -0.530 5.530 9 Si 0.931 3.069 10 H -0.214 1.214 11 H -0.199 1.199 12 H -0.181 1.181 13 C 0.334 3.666 14 O -0.505 6.505 15 C -0.206 4.206 16 H 0.138 0.862 17 C -0.202 4.202 18 C -0.118 4.118 19 H 0.132 0.868 20 C -0.038 4.038 21 C -0.224 4.224 22 C -0.185 4.185 23 C -0.210 4.210 24 H 0.262 0.738 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.740 0.414 -1.061 7.823 hybrid contribution -0.701 -1.096 1.386 1.901 sum 7.038 -0.681 0.325 7.079 Atomic orbital electron populations 1.25584 0.96736 1.01480 0.99402 1.24361 0.96161 1.00074 1.01283 1.18618 0.83465 1.01516 0.88345 1.43655 1.57436 1.06580 1.10189 1.20228 1.29682 0.88173 1.15459 0.90093 1.27640 0.92214 1.05358 0.96376 1.70774 1.18099 1.19350 1.44811 0.82984 0.76097 0.71550 0.76314 1.21405 1.19909 1.18123 1.19910 0.76117 0.83752 0.86857 1.90404 1.57873 1.21463 1.80804 1.22444 0.99248 1.04572 0.94360 0.86228 1.23250 1.03098 0.94453 0.99374 1.22434 0.89264 1.00268 0.99823 0.86771 1.20080 0.95095 0.95187 0.93464 1.22413 1.03694 0.95733 1.00556 1.21795 0.93492 1.01916 1.01295 1.22334 1.01076 1.00264 0.97303 0.73848 0.89913 0.87991 0.93172 0.88477 0.87513 0.92338 0.93225 0.91405 0.92134 0.92080 0.91920 0.92362 0.93468 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.62 19.25 74.32 1.43 -7.19 16 2 C -0.22 -9.85 13.67 31.13 0.43 -9.43 16 3 C 0.20 9.00 5.63 84.58 0.48 9.47 16 4 N -0.46 -22.07 0.63 -645.39 -0.40 -22.47 16 5 C -0.41 -19.70 6.19 84.04 0.52 -19.18 16 6 H 0.08 3.82 7.43 -2.91 -0.02 3.80 16 7 C -0.01 -0.63 3.52 84.92 0.30 -0.33 16 8 N -0.90 -49.08 11.84 21.66 0.26 -48.82 16 9 Si 1.11 43.80 29.97 68.60 2.06 45.86 16 10 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 12 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 13 C 0.54 26.62 3.29 87.66 0.29 26.91 16 14 O -0.62 -32.68 13.45 -3.07 -0.04 -32.72 16 15 C -0.19 -8.38 4.35 -11.54 -0.05 -8.43 16 16 H 0.12 6.03 5.13 -2.38 -0.01 6.01 16 17 C -0.16 -6.23 9.14 30.62 0.28 -5.95 16 18 C -0.10 -3.65 5.19 -10.77 -0.06 -3.70 16 19 H 0.11 3.80 8.06 -2.38 -0.02 3.78 16 20 C -0.04 -1.29 0.77 -52.18 -0.04 -1.33 16 21 C -0.17 -5.85 6.92 71.98 0.50 -5.35 16 22 C -0.13 -3.34 8.36 71.98 0.60 -2.74 16 23 C -0.15 -5.66 6.73 71.98 0.48 -5.17 16 24 H 0.25 7.42 7.80 -4.42 -0.03 7.38 16 25 H 0.08 3.63 7.37 -2.38 -0.02 3.62 16 26 H 0.10 4.07 8.04 -2.38 -0.02 4.05 16 27 H 0.26 15.13 7.34 -92.70 -0.68 14.45 16 28 H 0.10 3.79 5.57 -2.39 -0.01 3.77 16 29 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.88 3.43 -2.38 -0.01 2.87 16 33 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 2.48 3.74 -2.39 -0.01 2.47 16 37 H 0.05 1.54 8.03 -2.39 -0.02 1.52 16 38 H 0.06 2.34 6.44 -2.39 -0.02 2.32 16 Total: -1.00 -60.36 296.90 8.16 -52.20 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 1.14 Total: 38.38 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 5.16 Total: -32.43 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.15 Total: -71.29 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.04 Total: -32.72 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.06 Total: 45.86 kcal Total: -60.36 8.16 -52.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699767927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.573 kcal (2) G-P(sol) polarization free energy of solvation -60.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds