Wall clock time and date at job start Mon Mar 30 2020 21:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47492 * 40.86200 * 3 2 1 5 5 C 1.37099 * 119.99936 * 265.01090 * 4 3 2 6 6 H 1.07994 * 120.00032 * 204.47488 * 5 4 3 7 7 C 1.38946 * 120.00106 * 24.46912 * 5 4 3 8 8 N 1.31411 * 119.99902 * 9.66595 * 7 5 4 9 9 Si 1.86799 * 120.00227 * 189.65973 * 7 5 4 10 10 H 1.48501 * 109.46982 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47010 * 120.00437 * 9 7 5 12 12 H 1.48496 * 109.47456 * 240.00496 * 9 7 5 13 13 C 1.34771 * 120.00238 * 85.00384 * 4 3 2 14 14 O 1.21290 * 120.00604 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99787 * 0.02562 * 13 4 3 16 16 H 1.08999 * 115.56122 * 266.38620 * 15 13 4 17 17 C 1.52997 * 117.50233 * 52.07545 * 15 13 4 18 18 C 1.53001 * 60.00107 * 107.49069 * 17 15 13 19 19 H 1.08997 * 117.50141 * 107.49548 * 18 17 15 20 20 C 1.52999 * 117.49803 * 252.49032 * 18 17 15 21 21 C 1.53000 * 109.47422 * 20.52830 * 20 18 17 22 22 C 1.52998 * 109.47085 * 140.52720 * 20 18 17 23 23 C 1.52998 * 109.47207 * 260.52619 * 20 18 17 24 24 H 4.40642 * 5.51406 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47385 * 280.85962 * 3 2 1 26 26 H 1.08998 * 109.47398 * 160.85768 * 3 2 1 27 27 H 0.97010 * 120.00184 * 179.97438 * 8 7 5 28 28 H 1.09009 * 117.49893 * 0.02562 * 17 15 13 29 29 H 1.08995 * 117.50338 * 214.98047 * 17 15 13 30 30 H 1.08997 * 109.47446 * 170.30468 * 21 20 18 31 31 H 1.08996 * 109.46926 * 290.30562 * 21 20 18 32 32 H 1.08996 * 109.46840 * 50.30476 * 21 20 18 33 33 H 1.08997 * 109.47068 * 82.91343 * 22 20 18 34 34 H 1.09003 * 109.47599 * 202.90782 * 22 20 18 35 35 H 1.08996 * 109.47014 * 322.91327 * 22 20 18 36 36 H 1.09000 * 109.47122 * 60.00238 * 23 20 18 37 37 H 1.08998 * 109.47472 * 180.02562 * 23 20 18 38 38 H 1.08994 * 109.47263 * 300.00240 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0437 -0.9037 5 6 3.4613 -2.2802 -0.4094 6 1 4.1647 -2.9051 -0.9394 7 6 2.8872 -2.7292 0.7736 8 7 1.8959 -2.0602 1.3182 9 14 3.5243 -4.2840 1.5897 10 1 4.6373 -4.8461 0.7830 11 1 4.0157 -3.9615 2.9534 12 1 2.4269 -5.2802 1.6816 13 6 3.2636 -0.7891 -2.2208 14 8 3.6679 -1.6539 -2.9691 15 6 2.9051 0.5701 -2.7641 16 1 1.8869 0.6731 -3.1392 17 6 3.5360 1.7896 -2.0890 18 6 4.0047 1.3573 -3.4798 19 1 3.7099 1.9781 -4.3258 20 6 5.3842 0.7047 -3.5893 21 6 5.8021 0.1627 -2.2209 22 6 5.3260 -0.4449 -4.5971 23 6 6.4041 1.7439 -4.0593 24 1 -1.0498 -0.0001 -0.0004 25 1 3.0094 -0.1928 1.0092 26 1 3.0089 0.9716 -0.3370 27 1 1.4948 -2.3738 2.1439 28 1 4.2107 1.6088 -1.2521 29 1 2.9329 2.6948 -2.0199 30 1 6.6975 -0.4490 -2.3304 31 1 6.0105 0.9949 -1.5487 32 1 4.9958 -0.4441 -1.8088 33 1 5.4350 -0.0489 -5.6067 34 1 6.1338 -1.1479 -4.3935 35 1 4.3679 -0.9570 -4.5092 36 1 6.4455 2.5629 -3.3413 37 1 7.3868 1.2789 -4.1377 38 1 6.1064 2.1300 -5.0341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699767931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:21 Heat of formation + Delta-G solvation = 72.404197 kcal Electronic energy + Delta-G solvation = -19449.511955 eV Core-core repulsion = 16681.941628 eV Total energy + Delta-G solvation = -2767.570328 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16536 -36.98970 -35.08390 -33.57317 -31.84616 -31.12064 -26.85951 -26.67309 -26.45486 -25.26133 -22.80690 -22.40071 -19.29160 -17.87588 -17.50678 -16.77869 -15.88337 -15.41082 -14.79945 -14.19255 -14.09003 -13.69132 -13.26341 -13.20476 -12.57290 -12.33785 -12.03876 -11.96029 -11.70003 -11.47058 -11.15008 -11.02098 -10.87635 -10.53967 -10.47065 -10.34628 -10.15160 -10.03408 -9.71702 -9.47892 -9.22767 -9.12653 -8.72337 -8.10918 -7.75403 -6.24615 -3.90174 3.15248 3.26269 3.31978 3.73854 3.90291 4.12529 4.21222 4.24537 4.88589 5.04870 5.10252 5.26452 5.31907 5.46676 5.61075 5.65027 5.67430 5.92243 5.98972 6.04929 6.15193 6.19722 6.26624 6.35979 6.40951 6.47383 6.51629 6.61593 6.67546 6.80997 6.86234 7.06953 7.14964 7.31384 7.57736 8.11976 8.47239 8.94798 9.17310 9.38034 9.95386 10.73296 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.008654 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.261847 B = 3234.781555 C = 3910.044864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.096 4.096 3 C 0.220 3.780 4 N -0.441 5.441 5 C -0.310 4.310 6 H 0.101 0.899 7 C 0.031 3.969 8 N -0.869 5.869 9 Si 0.924 3.076 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.494 3.506 14 O -0.569 6.569 15 C -0.164 4.164 16 H 0.116 0.884 17 C -0.180 4.180 18 C -0.117 4.117 19 H 0.101 0.899 20 C -0.033 4.033 21 C -0.166 4.166 22 C -0.155 4.155 23 C -0.135 4.135 24 H 0.195 0.805 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.267 0.733 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 8.404 -3.728 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.098 4.098 3 C 0.097 3.903 4 N -0.159 5.159 5 C -0.438 4.438 6 H 0.119 0.881 7 C -0.173 4.173 8 N -0.508 5.508 9 Si 0.751 3.249 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.285 3.715 14 O -0.453 6.453 15 C -0.185 4.185 16 H 0.133 0.867 17 C -0.217 4.217 18 C -0.135 4.135 19 H 0.119 0.881 20 C -0.033 4.033 21 C -0.223 4.223 22 C -0.211 4.211 23 C -0.192 4.192 24 H 0.213 0.787 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.513 7.920 -3.894 9.499 hybrid contribution -0.287 -0.718 0.667 1.021 sum 3.226 7.202 -3.227 8.526 Atomic orbital electron populations 1.24177 0.95322 1.05568 1.04579 1.23129 0.94292 0.95668 0.96709 1.18622 0.84443 0.90352 0.96864 1.43703 1.56451 1.11535 1.04261 1.19669 1.23990 0.93608 1.06528 0.88133 1.25371 0.94979 0.98879 0.98052 1.69971 1.21479 1.39367 1.19956 0.85900 0.78797 0.81399 0.78840 1.19294 1.20770 1.20890 1.18903 0.82455 0.87911 0.82260 1.90436 1.50848 1.47855 1.56194 1.22319 0.98760 0.92337 1.05095 0.86653 1.23294 1.03820 0.97951 0.96599 1.22396 0.94586 1.01255 0.95309 0.88120 1.19956 0.91837 0.94899 0.96615 1.22495 1.03237 1.00730 0.95880 1.22295 1.06040 0.97209 0.95601 1.21862 0.98607 0.98427 1.00318 0.78741 0.87790 0.90593 0.92253 0.87531 0.88803 0.93323 0.93759 0.88572 0.94964 0.93711 0.87579 0.93129 0.93090 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.90 19.25 29.55 0.57 -5.33 16 2 C -0.10 -2.18 11.11 -37.13 -0.41 -2.59 16 3 C 0.22 4.83 4.86 -6.83 -0.03 4.80 16 4 N -0.44 -10.73 2.00 -117.96 -0.24 -10.97 16 5 C -0.31 -8.31 9.20 -14.93 -0.14 -8.44 16 6 H 0.10 2.82 7.44 -52.49 -0.39 2.43 16 7 C 0.03 0.80 5.11 -17.47 -0.09 0.71 16 8 N -0.87 -22.73 9.03 55.50 0.50 -22.23 16 9 Si 0.92 20.58 29.56 -169.99 -5.03 15.56 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.49 11.47 3.98 -10.99 -0.04 11.42 16 14 O -0.57 -14.67 12.24 5.55 0.07 -14.60 16 15 C -0.16 -3.06 5.29 -91.77 -0.49 -3.54 16 16 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 17 C -0.18 -2.77 7.36 -26.73 -0.20 -2.97 16 18 C -0.12 -1.85 4.96 -90.62 -0.45 -2.30 16 19 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 20 C -0.03 -0.54 0.76 -154.51 -0.12 -0.66 16 21 C -0.17 -3.01 6.90 37.16 0.26 -2.75 16 22 C -0.15 -2.75 8.05 37.16 0.30 -2.45 16 23 C -0.13 -1.80 8.34 37.16 0.31 -1.49 16 24 H 0.20 3.42 7.80 -54.10 -0.42 3.00 16 25 H 0.10 2.43 6.66 -51.93 -0.35 2.08 16 26 H 0.08 1.42 3.74 -51.93 -0.19 1.23 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.11 1.70 4.86 -51.92 -0.25 1.44 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.87 7.90 -51.93 -0.41 0.46 16 31 H 0.04 0.71 7.12 -51.93 -0.37 0.35 16 32 H 0.10 2.04 3.00 -51.97 -0.16 1.88 16 33 H 0.03 0.49 7.92 -51.93 -0.41 0.08 16 34 H 0.04 0.81 7.78 -51.93 -0.40 0.40 16 35 H 0.11 2.22 4.68 -51.93 -0.24 1.97 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -28.89 295.38 -6.04 -34.93 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.27 Total: 8.46 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.53 Total: -15.59 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.26 Total: -33.20 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.07 Total: -14.60 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.89 -6.04 -34.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699767931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.332 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds