Wall clock time and date at job start Mon Mar 30 2020 21:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47492 * 40.86200 * 3 2 1 5 5 C 1.37099 * 119.99936 * 265.01090 * 4 3 2 6 6 H 1.07994 * 120.00032 * 204.47488 * 5 4 3 7 7 C 1.38946 * 120.00106 * 24.46912 * 5 4 3 8 8 N 1.31411 * 119.99902 * 9.66595 * 7 5 4 9 9 Si 1.86799 * 120.00227 * 189.65973 * 7 5 4 10 10 H 1.48501 * 109.46982 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47010 * 120.00437 * 9 7 5 12 12 H 1.48496 * 109.47456 * 240.00496 * 9 7 5 13 13 C 1.34771 * 120.00238 * 85.00384 * 4 3 2 14 14 O 1.21290 * 120.00604 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99787 * 0.02562 * 13 4 3 16 16 H 1.08999 * 115.56122 * 266.38620 * 15 13 4 17 17 C 1.52997 * 117.50233 * 52.07545 * 15 13 4 18 18 C 1.53001 * 60.00107 * 107.49069 * 17 15 13 19 19 H 1.08997 * 117.50141 * 107.49548 * 18 17 15 20 20 C 1.52999 * 117.49803 * 252.49032 * 18 17 15 21 21 C 1.53000 * 109.47422 * 20.52830 * 20 18 17 22 22 C 1.52998 * 109.47085 * 140.52720 * 20 18 17 23 23 C 1.52998 * 109.47207 * 260.52619 * 20 18 17 24 24 H 4.40642 * 5.51406 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47385 * 280.85962 * 3 2 1 26 26 H 1.08998 * 109.47398 * 160.85768 * 3 2 1 27 27 H 0.97010 * 120.00184 * 179.97438 * 8 7 5 28 28 H 1.09009 * 117.49893 * 0.02562 * 17 15 13 29 29 H 1.08995 * 117.50338 * 214.98047 * 17 15 13 30 30 H 1.08997 * 109.47446 * 170.30468 * 21 20 18 31 31 H 1.08996 * 109.46926 * 290.30562 * 21 20 18 32 32 H 1.08996 * 109.46840 * 50.30476 * 21 20 18 33 33 H 1.08997 * 109.47068 * 82.91343 * 22 20 18 34 34 H 1.09003 * 109.47599 * 202.90782 * 22 20 18 35 35 H 1.08996 * 109.47014 * 322.91327 * 22 20 18 36 36 H 1.09000 * 109.47122 * 60.00238 * 23 20 18 37 37 H 1.08998 * 109.47472 * 180.02562 * 23 20 18 38 38 H 1.08994 * 109.47263 * 300.00240 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0437 -0.9037 5 6 3.4613 -2.2802 -0.4094 6 1 4.1647 -2.9051 -0.9394 7 6 2.8872 -2.7292 0.7736 8 7 1.8959 -2.0602 1.3182 9 14 3.5243 -4.2840 1.5897 10 1 4.6373 -4.8461 0.7830 11 1 4.0157 -3.9615 2.9534 12 1 2.4269 -5.2802 1.6816 13 6 3.2636 -0.7891 -2.2208 14 8 3.6679 -1.6539 -2.9691 15 6 2.9051 0.5701 -2.7641 16 1 1.8869 0.6731 -3.1392 17 6 3.5360 1.7896 -2.0890 18 6 4.0047 1.3573 -3.4798 19 1 3.7099 1.9781 -4.3258 20 6 5.3842 0.7047 -3.5893 21 6 5.8021 0.1627 -2.2209 22 6 5.3260 -0.4449 -4.5971 23 6 6.4041 1.7439 -4.0593 24 1 -1.0498 -0.0001 -0.0004 25 1 3.0094 -0.1928 1.0092 26 1 3.0089 0.9716 -0.3370 27 1 1.4948 -2.3738 2.1439 28 1 4.2107 1.6088 -1.2521 29 1 2.9329 2.6948 -2.0199 30 1 6.6975 -0.4490 -2.3304 31 1 6.0105 0.9949 -1.5487 32 1 4.9958 -0.4441 -1.8088 33 1 5.4350 -0.0489 -5.6067 34 1 6.1338 -1.1479 -4.3935 35 1 4.3679 -0.9570 -4.5092 36 1 6.4455 2.5629 -3.3413 37 1 7.3868 1.2789 -4.1377 38 1 6.1064 2.1300 -5.0341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699767931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:20 Heat of formation + Delta-G solvation = 57.411262 kcal Electronic energy + Delta-G solvation = -19450.162097 eV Core-core repulsion = 16681.941628 eV Total energy + Delta-G solvation = -2768.220470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72057 -38.56371 -36.92227 -34.95876 -33.66286 -32.92700 -28.29080 -28.21052 -27.92992 -27.02127 -24.38450 -23.72366 -20.89615 -19.61622 -18.99989 -18.47917 -17.50658 -17.14356 -16.35227 -15.98229 -15.59095 -15.34751 -14.73501 -14.52262 -14.06856 -14.02763 -13.64296 -13.39259 -13.17785 -13.03644 -12.83465 -12.55822 -12.40985 -12.29331 -12.13455 -11.81302 -11.51998 -11.39340 -11.21702 -11.10244 -10.89435 -10.70295 -10.42875 -9.86522 -9.65415 -8.20817 -5.92716 1.35629 1.40918 1.53097 1.99643 2.19117 2.36852 2.49757 2.80778 3.13611 3.29905 3.70728 3.90868 3.97348 4.02844 4.19994 4.30523 4.35599 4.58861 4.73708 4.80549 4.84550 4.90055 4.94603 5.01708 5.03821 5.08209 5.16510 5.21417 5.32608 5.35504 5.49031 5.50095 5.52459 5.64666 5.86017 6.16768 6.55225 7.23339 7.25956 7.51753 8.11511 8.74351 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.008654 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.261847 B = 3234.781555 C = 3910.044864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.134 4.134 3 C 0.226 3.774 4 N -0.454 5.454 5 C -0.337 4.337 6 H 0.072 0.928 7 C -0.002 4.002 8 N -0.881 5.881 9 Si 0.981 3.019 10 H -0.275 1.275 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.494 3.506 14 O -0.606 6.606 15 C -0.191 4.191 16 H 0.121 0.879 17 C -0.159 4.159 18 C -0.102 4.102 19 H 0.132 0.868 20 C -0.036 4.036 21 C -0.168 4.168 22 C -0.151 4.151 23 C -0.127 4.127 24 H 0.227 0.773 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.268 0.732 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 10.612 -4.011 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.136 4.136 3 C 0.104 3.896 4 N -0.173 5.173 5 C -0.465 4.465 6 H 0.090 0.910 7 C -0.204 4.204 8 N -0.519 5.519 9 Si 0.806 3.194 10 H -0.200 1.200 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.493 6.493 15 C -0.212 4.212 16 H 0.138 0.862 17 C -0.196 4.196 18 C -0.120 4.120 19 H 0.149 0.851 20 C -0.036 4.036 21 C -0.225 4.225 22 C -0.208 4.208 23 C -0.185 4.185 24 H 0.244 0.756 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.385 10.152 -4.167 11.484 hybrid contribution -0.255 -1.434 0.705 1.618 sum 3.131 8.718 -3.462 9.889 Atomic orbital electron populations 1.25013 0.96312 1.04165 1.03133 1.23496 0.95038 0.96978 0.98043 1.18626 0.84517 0.91015 0.95469 1.43829 1.56976 1.11255 1.05209 1.19536 1.24574 0.94973 1.07387 0.90975 1.25987 0.95073 1.01323 0.98060 1.70086 1.21712 1.40132 1.19960 0.85045 0.77894 0.78174 0.78238 1.20013 1.19321 1.20899 1.19638 0.80678 0.89459 0.81614 1.90423 1.52045 1.49773 1.57068 1.22168 1.00036 0.90863 1.08160 0.86151 1.23390 1.02858 0.97204 0.96107 1.22551 0.92916 0.99940 0.96624 0.85070 1.20008 0.93436 0.95262 0.94924 1.22479 1.01608 1.00838 0.97595 1.22183 1.03435 0.97520 0.97630 1.21787 0.97470 0.97638 1.01569 0.75624 0.89896 0.87458 0.92218 0.88183 0.85368 0.94329 0.91951 0.91698 0.92509 0.95321 0.90877 0.91672 0.92954 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.97 19.25 74.32 1.43 -9.54 16 2 C -0.13 -6.00 11.11 31.12 0.35 -5.65 16 3 C 0.23 9.97 4.86 84.57 0.41 10.38 16 4 N -0.45 -22.72 2.00 -645.51 -1.29 -24.01 16 5 C -0.34 -18.78 9.20 84.04 0.77 -18.01 16 6 H 0.07 4.32 7.44 -2.91 -0.02 4.30 16 7 C 0.00 -0.13 5.11 84.93 0.43 0.31 16 8 N -0.88 -46.48 9.03 21.66 0.20 -46.28 16 9 Si 0.98 43.11 29.56 68.60 2.03 45.14 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.49 23.44 3.98 87.66 0.35 23.79 16 14 O -0.61 -32.74 12.24 -3.06 -0.04 -32.78 16 15 C -0.19 -6.90 5.29 -11.54 -0.06 -6.96 16 16 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 17 C -0.16 -4.41 7.36 30.59 0.23 -4.18 16 18 C -0.10 -2.93 4.96 -10.79 -0.05 -2.98 16 19 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 20 C -0.04 -1.12 0.76 -52.18 -0.04 -1.16 16 21 C -0.17 -6.04 6.90 71.98 0.50 -5.54 16 22 C -0.15 -5.30 8.05 71.98 0.58 -4.73 16 23 C -0.13 -2.94 8.34 71.98 0.60 -2.34 16 24 H 0.23 7.35 7.80 -4.43 -0.03 7.31 16 25 H 0.08 3.96 6.66 -2.39 -0.02 3.94 16 26 H 0.11 3.90 3.74 -2.39 -0.01 3.89 16 27 H 0.27 13.51 8.31 -92.70 -0.77 12.74 16 28 H 0.10 2.94 4.86 -2.38 -0.01 2.93 16 29 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.04 1.40 7.90 -2.39 -0.02 1.38 16 31 H 0.06 1.94 7.12 -2.39 -0.02 1.92 16 32 H 0.06 2.82 3.00 -2.43 -0.01 2.81 16 33 H 0.06 1.66 7.92 -2.39 -0.02 1.64 16 34 H 0.03 1.05 7.78 -2.39 -0.02 1.03 16 35 H 0.07 3.12 4.68 -2.39 -0.01 3.11 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 Total: -1.00 -64.90 295.38 7.44 -57.47 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 1.05 Total: 27.08 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 5.49 Total: -26.61 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.10 Total: -70.29 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.04 Total: -32.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.90 7.44 -57.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699767931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.877 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds