Wall clock time and date at job start Mon Mar 30 2020 21:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.55281 * 2 1 4 4 C 1.53001 * 117.51667 * 214.30487 * 2 1 3 5 5 C 1.52995 * 59.99976 * 252.51252 * 4 2 1 6 6 H 1.08998 * 117.52621 * 252.51581 * 5 4 2 7 7 C 1.53005 * 117.49617 * 107.48627 * 5 4 2 8 8 H 1.09001 * 115.55022 * 17.05352 * 7 5 4 9 9 C 1.53077 * 117.49203 * 162.77931 * 7 5 4 10 10 C 1.52995 * 59.98592 * 107.48485 * 9 7 5 11 11 H 1.08996 * 117.50561 * 252.50184 * 10 9 7 12 12 C 1.50699 * 117.49910 * 107.49558 * 10 9 7 13 13 O 1.21292 * 120.00292 * 291.25970 * 12 10 9 14 14 N 1.34778 * 120.00120 * 111.25813 * 12 10 9 15 15 C 1.37098 * 120.00324 * 180.02562 * 14 12 10 16 16 H 1.07998 * 119.99870 * 225.20992 * 15 14 12 17 17 C 1.38940 * 120.00097 * 45.21330 * 15 14 12 18 18 N 1.31419 * 119.99869 * 197.60130 * 17 15 14 19 19 Si 1.86800 * 120.00055 * 17.87834 * 17 15 14 20 20 H 1.48497 * 109.47036 * 265.95777 * 19 17 15 21 21 H 1.48500 * 109.47216 * 25.95837 * 19 17 15 22 22 H 1.48497 * 109.47287 * 145.96011 * 19 17 15 23 23 C 1.46505 * 119.99497 * 359.97438 * 14 12 10 24 24 C 1.53009 * 117.49726 * 183.23240 * 23 14 12 25 25 C 1.52996 * 60.00194 * 252.51693 * 24 23 14 26 26 H 1.09001 * 109.46346 * 274.32743 * 1 2 3 27 27 H 1.08999 * 109.47095 * 34.32355 * 1 2 3 28 28 H 1.08995 * 109.46833 * 154.33215 * 1 2 3 29 29 H 1.09005 * 117.49858 * 145.03153 * 4 2 1 30 30 H 1.08996 * 117.50194 * 0.02562 * 4 2 1 31 31 H 1.09000 * 117.49585 * 0.02562 * 9 7 5 32 32 H 1.09002 * 117.51072 * 214.96283 * 9 7 5 33 33 H 0.97001 * 119.99866 * 180.27280 * 18 17 15 34 34 H 1.08994 * 115.55412 * 328.94814 * 23 14 12 35 35 H 1.09003 * 117.49490 * 0.02562 * 24 23 14 36 36 H 1.09004 * 117.49245 * 145.02294 * 24 23 14 37 37 H 1.09006 * 117.50073 * 252.51184 * 25 24 23 38 38 H 1.08999 * 117.51866 * 107.47942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7648 5 6 2.2366 -1.1207 0.7652 6 1 3.1712 -0.8746 1.2691 7 6 1.3589 -2.1561 1.4715 8 1 1.0288 -2.9919 0.8546 9 6 1.6472 -2.4372 2.9484 10 6 0.3975 -1.6501 2.5489 11 1 0.3899 -0.5797 2.7541 12 6 -0.9332 -2.3458 2.6761 13 8 -1.2080 -3.2688 1.9387 14 7 -1.8180 -1.9425 3.6094 15 6 -3.0284 -2.5757 3.7255 16 1 -3.9333 -1.9957 3.8310 17 6 -3.0910 -3.9636 3.7076 18 7 -4.2343 -4.5668 3.4711 19 14 -1.5515 -4.9721 4.0274 20 1 -0.9087 -5.3177 2.7342 21 1 -0.6050 -4.1819 4.8550 22 1 -1.9169 -6.2185 4.7472 23 6 -1.4858 -0.8280 4.5005 24 6 -2.4996 -0.4666 5.5879 25 6 -2.3192 0.4490 4.3755 26 1 -0.3632 0.0775 1.0248 27 1 -0.3633 0.8487 -0.5795 28 1 -0.3633 -0.9262 -0.4451 29 1 3.1721 -0.8749 -1.2678 30 1 1.6120 -1.8583 -1.2684 31 1 2.4617 -1.8842 3.4163 32 1 1.5068 -3.4582 3.3033 33 1 -4.2788 -5.5357 3.4626 34 1 -0.4284 -0.7174 4.7409 35 1 -3.4136 -1.0583 5.6405 36 1 -2.1092 -0.1182 6.5442 37 1 -1.8102 1.3998 4.5340 38 1 -3.1144 0.4600 3.6300 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717216269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:49 Heat of formation + Delta-G solvation = 52.439418 kcal Electronic energy + Delta-G solvation = -19033.581687 eV Core-core repulsion = 16265.145621 eV Total energy + Delta-G solvation = -2768.436065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62970 -38.11639 -36.43151 -34.74445 -32.84709 -31.35465 -28.46539 -25.92533 -23.52784 -22.76097 -21.75680 -21.25322 -21.10202 -19.45453 -18.66818 -17.01801 -16.14226 -15.69328 -15.26585 -14.71263 -14.13040 -13.85302 -13.56352 -13.12431 -13.00287 -12.69388 -12.31734 -12.16690 -11.91067 -11.34763 -11.30111 -11.10126 -11.02669 -10.92329 -10.59305 -10.45831 -10.23506 -10.08648 -9.89663 -9.78605 -9.49324 -9.21919 -8.55273 -8.41697 -7.43490 -6.18717 -3.97428 3.22023 3.46123 3.56269 3.62964 3.83963 4.29260 4.32194 4.51549 4.60746 4.78338 4.94416 5.02923 5.19242 5.28624 5.34688 5.47097 5.47683 5.54146 5.61314 5.65133 5.68473 5.87626 5.88709 5.99793 6.02977 6.10701 6.15589 6.23590 6.28144 6.33161 6.39610 6.59518 6.62527 6.66210 6.88387 7.86655 8.02841 8.80013 8.95130 9.44339 9.86438 10.87358 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.008982 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.699011 B = 3116.750386 C = 3705.566324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.147 4.147 3 H 0.099 0.901 4 C -0.175 4.175 5 C -0.121 4.121 6 H 0.103 0.897 7 C -0.094 4.094 8 H 0.115 0.885 9 C -0.160 4.160 10 C -0.165 4.165 11 H 0.116 0.884 12 C 0.487 3.513 13 O -0.542 6.542 14 N -0.436 5.436 15 C -0.344 4.344 16 H 0.093 0.907 17 C 0.093 3.907 18 N -0.868 5.868 19 Si 0.903 3.097 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.306 1.306 23 C 0.067 3.933 24 C -0.172 4.172 25 C -0.200 4.200 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.272 0.728 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 9.462 -1.214 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 H 0.117 0.883 4 C -0.211 4.211 5 C -0.139 4.139 6 H 0.121 0.879 7 C -0.112 4.112 8 H 0.133 0.867 9 C -0.198 4.198 10 C -0.186 4.186 11 H 0.134 0.866 12 C 0.277 3.723 13 O -0.424 6.424 14 N -0.156 5.156 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.116 4.116 18 N -0.503 5.503 19 Si 0.733 3.267 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.235 1.235 23 C -0.039 4.039 24 C -0.210 4.210 25 C -0.239 4.239 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.730 8.818 -1.615 14.763 hybrid contribution 0.666 -0.435 0.332 0.862 sum 12.395 8.383 -1.283 15.019 Atomic orbital electron populations 1.21394 0.92221 1.01828 1.02664 1.22356 0.95957 0.93717 1.04441 0.88306 1.23120 1.02240 1.02012 0.93776 1.21824 0.99627 0.99061 0.93375 0.87867 1.21683 0.99072 0.99754 0.90728 0.86665 1.23012 0.97846 1.01274 0.97665 1.22397 0.90799 0.99789 1.05650 0.86624 1.19407 0.85512 0.85950 0.81455 1.90544 1.77591 1.29993 1.44272 1.43048 1.15855 1.29418 1.27319 1.18662 0.83500 0.89768 1.55077 0.88934 1.25276 0.96913 0.97061 0.92306 1.69738 1.26430 1.10115 1.44033 0.86476 0.83520 0.78462 0.78260 1.18185 1.20213 1.23475 1.21742 0.95236 0.89886 0.97020 1.23146 1.02770 1.02796 0.92284 1.23286 1.04472 0.94220 1.01890 0.91449 0.92886 0.92083 0.89173 0.88610 0.88481 0.88883 0.91862 0.87454 0.87003 0.89511 0.89553 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.97 37.16 0.33 -1.45 16 2 C -0.15 -1.83 6.39 -90.62 -0.58 -2.41 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.17 -2.10 9.90 -26.73 -0.26 -2.37 16 5 C -0.12 -1.57 5.87 -90.62 -0.53 -2.11 16 6 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 7 C -0.09 -1.54 4.77 -90.58 -0.43 -1.97 16 8 H 0.12 2.18 7.67 -51.93 -0.40 1.78 16 9 C -0.16 -2.59 9.96 -26.69 -0.27 -2.86 16 10 C -0.16 -3.00 2.96 -91.77 -0.27 -3.27 16 11 H 0.12 1.87 6.46 -51.93 -0.34 1.53 16 12 C 0.49 11.66 5.66 -10.99 -0.06 11.60 16 13 O -0.54 -15.17 12.08 5.55 0.07 -15.10 16 14 N -0.44 -10.56 2.45 -107.72 -0.26 -10.82 16 15 C -0.34 -9.72 8.35 -14.94 -0.12 -9.84 16 16 H 0.09 2.73 7.47 -52.49 -0.39 2.34 16 17 C 0.09 2.77 4.88 -17.47 -0.09 2.69 16 18 N -0.87 -26.79 13.96 55.50 0.77 -26.01 16 19 Si 0.90 24.36 24.90 -169.99 -4.23 20.13 16 20 H -0.26 -7.23 6.39 56.52 0.36 -6.87 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 23 C 0.07 1.28 5.62 -67.92 -0.38 0.90 16 24 C -0.17 -3.02 9.80 -26.73 -0.26 -3.28 16 25 C -0.20 -3.31 10.36 -26.73 -0.28 -3.59 16 26 H 0.07 1.06 5.95 -51.93 -0.31 0.75 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.00 7.90 -51.93 -0.41 0.58 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 34 H 0.11 1.79 7.12 -51.93 -0.37 1.42 16 35 H 0.11 2.25 6.74 -51.93 -0.35 1.90 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -32.50 306.43 -8.21 -40.71 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.96 Total: 4.45 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -3.20 Total: -17.98 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.51 Total: -36.84 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.07 Total: -15.10 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.23 Total: 20.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.50 -8.21 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717216269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.149 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds