Wall clock time and date at job start Mon Mar 30 2020 21:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46907 * 116.54703 * 3 2 1 5 5 H 1.08997 * 109.52712 * 54.91475 * 4 3 2 6 6 C 1.53046 * 109.49370 * 294.83566 * 4 3 2 7 7 C 1.53047 * 109.53411 * 178.68636 * 6 4 3 8 8 C 1.53185 * 109.31340 * 61.36499 * 7 6 4 9 9 N 1.46923 * 108.77598 * 305.36404 * 8 7 6 10 10 C 1.34781 * 120.63034 * 233.58552 * 9 8 7 11 11 O 1.21281 * 120.00266 * 174.59237 * 10 9 8 12 12 C 1.50702 * 119.99892 * 354.60042 * 10 9 8 13 13 H 1.09000 * 109.47085 * 334.71633 * 12 10 9 14 14 C 1.52993 * 109.47443 * 94.71787 * 12 10 9 15 15 C 1.50700 * 109.46673 * 214.71956 * 12 10 9 16 16 H 1.07999 * 120.00600 * 359.97438 * 15 12 10 17 17 C 1.37887 * 119.99799 * 179.97438 * 15 12 10 18 18 N 1.31512 * 119.99989 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99930 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47215 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47014 * 119.99576 * 19 17 15 22 22 H 1.48497 * 109.47078 * 239.99983 * 19 17 15 23 23 C 1.46923 * 118.74183 * 53.61245 * 9 8 7 24 24 H 4.44648 * 5.63263 * 180.02562 * 4 1 2 25 25 H 1.08990 * 109.47285 * 356.54375 * 3 2 1 26 26 H 1.09000 * 109.47053 * 236.54398 * 3 2 1 27 27 H 1.09001 * 109.45774 * 298.70191 * 6 4 3 28 28 H 1.08991 * 109.46097 * 58.68181 * 6 4 3 29 29 H 1.09003 * 109.49650 * 301.40828 * 7 6 4 30 30 H 1.08999 * 109.49133 * 181.31833 * 7 6 4 31 31 H 1.08998 * 109.58623 * 185.57832 * 8 7 6 32 32 H 1.08998 * 109.58923 * 65.15125 * 8 7 6 33 33 H 1.09001 * 109.47327 * 185.06620 * 14 12 10 34 34 H 1.08996 * 109.47205 * 305.07122 * 14 12 10 35 35 H 1.09001 * 109.47282 * 65.07370 * 14 12 10 36 36 H 0.96994 * 119.99988 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.58753 * 66.17431 * 23 9 8 38 38 H 1.09002 * 109.59046 * 186.46417 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.6456 -1.2904 5 1 2.7200 1.6389 -1.3981 6 6 2.7550 -0.2204 -2.4870 7 6 3.2359 0.4406 -3.7809 8 6 4.7634 0.5527 -3.7552 9 7 5.1652 1.2592 -2.5312 10 6 5.9619 2.3445 -2.5949 11 8 6.2069 2.9768 -1.5894 12 6 6.5482 2.7724 -3.9156 13 1 6.6148 1.9107 -4.5798 14 6 5.6519 3.8375 -4.5504 15 6 7.9253 3.3424 -3.6927 16 1 8.3349 3.3905 -2.6945 17 6 8.6625 3.8026 -4.7632 18 7 8.1641 3.7436 -5.9788 19 14 10.3692 4.5099 -4.4868 20 1 10.6959 4.4632 -3.0389 21 1 11.3651 3.7102 -5.2444 22 1 10.4037 5.9179 -4.9574 23 6 4.6824 0.7600 -1.2365 24 1 -1.0501 0.0001 0.0003 25 1 3.0098 -1.0249 0.0619 26 1 3.0091 0.5674 0.8574 27 1 3.2113 -1.2056 -2.3912 28 1 1.6703 -0.3235 -2.5136 29 1 2.7994 1.4358 -3.8651 30 1 2.9298 -0.1648 -4.6341 31 1 5.1036 1.1107 -4.6275 32 1 5.2032 -0.4446 -3.7624 33 1 6.0261 4.0817 -5.5446 34 1 4.6340 3.4559 -4.6289 35 1 5.6573 4.7337 -3.9300 36 1 8.6825 4.0677 -6.7318 37 1 5.1156 -0.2204 -1.0384 38 1 4.9712 1.4535 -0.4467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855008017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:42 Heat of formation + Delta-G solvation = -1.349750 kcal Electronic energy + Delta-G solvation = -18441.578514 eV Core-core repulsion = 15670.809975 eV Total energy + Delta-G solvation = -2770.768539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65861 -37.34897 -34.66626 -33.75583 -32.07580 -31.39665 -30.28198 -26.99888 -25.25028 -25.12234 -22.40501 -22.03365 -20.18701 -18.48029 -17.84818 -16.50135 -16.08910 -15.24199 -14.89954 -14.63539 -14.35246 -14.21785 -13.64516 -13.47504 -12.98337 -12.78240 -12.46032 -12.34369 -12.14000 -11.43184 -11.13146 -10.98397 -10.88872 -10.69176 -10.65720 -10.60490 -10.49972 -10.21924 -10.18800 -10.04190 -10.02227 -8.96201 -8.57027 -8.28056 -8.01604 -6.04181 -4.07052 2.72393 2.76757 3.31753 3.39296 3.46487 3.68624 3.73212 4.28611 4.46560 4.74293 4.90901 4.98540 5.23218 5.29138 5.43535 5.46698 5.48905 5.62561 5.74461 5.83213 5.90791 5.93928 5.98026 6.09111 6.18304 6.21617 6.37319 6.47292 6.69535 6.87703 7.01834 7.14035 7.47662 7.54153 7.77021 7.97973 8.11543 8.39098 8.97286 9.24024 9.57471 11.03574 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.043739 B = 0.005007 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.005940 B = 5590.322071 C = 5889.575076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.172 4.172 3 C -0.010 4.010 4 C -0.097 4.097 5 H 0.077 0.923 6 C -0.111 4.111 7 C -0.135 4.135 8 C 0.108 3.892 9 N -0.626 5.626 10 C 0.526 3.474 11 O -0.550 6.550 12 C 0.030 3.970 13 H 0.048 0.952 14 C -0.127 4.127 15 C -0.499 4.499 16 H 0.067 0.933 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.115 3.885 24 H 0.214 0.786 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.010 0.990 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -9.550 5.207 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.172 4.172 3 C -0.047 4.047 4 C -0.116 4.116 5 H 0.095 0.905 6 C -0.149 4.149 7 C -0.173 4.173 8 C -0.016 4.016 9 N -0.361 5.361 10 C 0.317 3.683 11 O -0.426 6.426 12 C 0.009 3.991 13 H 0.065 0.935 14 C -0.185 4.185 15 C -0.537 4.537 16 H 0.085 0.915 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.008 4.008 24 H 0.231 0.769 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.994 -9.137 5.562 16.071 hybrid contribution 0.547 0.291 0.033 0.620 sum -11.447 -8.846 5.595 15.512 Atomic orbital electron populations 1.24833 0.95908 1.01745 1.01554 1.23117 0.94505 0.99850 0.99777 1.18783 0.84726 1.02282 0.98882 1.21518 0.96419 1.00038 0.93619 0.90470 1.21575 1.00591 0.98555 0.94179 1.21933 0.96409 1.01448 0.97504 1.21723 0.93831 0.97334 0.88676 1.48317 1.51207 1.30581 1.06040 1.22035 0.75517 0.77419 0.93280 1.90516 1.60086 1.53682 1.38361 1.18924 0.95520 0.96575 0.88048 0.93451 1.21675 0.94737 0.98307 1.03785 1.21066 0.98222 1.40170 0.94277 0.91527 1.24927 0.98426 0.95720 0.94994 1.69883 1.37471 1.47510 0.98501 0.86411 0.83809 0.78666 0.78460 1.19612 1.21029 1.20947 1.21428 0.91750 0.99610 0.88011 0.76882 0.89411 0.89241 0.91869 0.92038 0.91546 0.90987 0.88309 0.92207 0.89120 0.97103 0.94536 0.92973 0.92273 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.28 19.25 29.55 0.57 -1.71 16 2 C -0.17 -1.96 12.30 -37.12 -0.46 -2.42 16 3 C -0.01 -0.10 5.19 -29.52 -0.15 -0.25 16 4 C -0.10 -1.21 2.31 -90.49 -0.21 -1.42 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -1.27 5.00 -26.68 -0.13 -1.41 16 7 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 8 C 0.11 1.64 6.15 -3.72 -0.02 1.62 16 9 N -0.63 -11.46 2.97 -172.77 -0.51 -11.97 16 10 C 0.53 12.31 6.68 -10.98 -0.07 12.24 16 11 O -0.55 -14.59 15.52 5.56 0.09 -14.51 16 12 C 0.03 0.76 1.83 -92.93 -0.17 0.59 16 13 H 0.05 1.19 6.19 -51.93 -0.32 0.87 16 14 C -0.13 -3.05 8.77 37.15 0.33 -2.73 16 15 C -0.50 -14.20 8.32 -34.44 -0.29 -14.49 16 16 H 0.07 2.00 7.25 -52.49 -0.38 1.62 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.99 11.38 55.43 0.63 -24.36 16 19 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 1.74 5.73 -3.71 -0.02 1.72 16 24 H 0.21 1.45 7.80 -54.09 -0.42 1.03 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.67 5.51 -51.93 -0.29 1.38 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 2.32 6.23 -51.93 -0.32 2.00 16 34 H 0.01 0.21 8.11 -51.93 -0.42 -0.21 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.51 7.00 -51.93 -0.36 1.14 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -31.52 310.67 -6.86 -38.38 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.84 Total: -0.42 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.89 Total: -8.52 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.12 Total: -36.34 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.52 -6.86 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855008017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.033 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds