Wall clock time and date at job start Mon Mar 30 2020 21:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47121 * 167.03283 * 3 2 1 5 5 H 1.08994 * 110.91098 * 51.09584 * 4 3 2 6 6 C 1.55158 * 111.00093 * 287.19586 * 4 3 2 7 7 C 1.54314 * 102.85772 * 206.22685 * 6 4 3 8 8 N 1.47014 * 107.27734 * 22.53087 * 7 6 4 9 9 C 1.34781 * 125.64562 * 180.96688 * 8 7 6 10 10 O 1.21286 * 120.00112 * 179.68856 * 9 8 7 11 11 C 1.50700 * 120.00231 * 359.69095 * 9 8 7 12 12 C 1.52997 * 109.47092 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46867 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47038 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.47422 * 108.70802 * 0.69886 * 8 7 6 23 23 H 4.44654 * 5.63410 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47267 * 47.03540 * 3 2 1 25 25 H 1.09002 * 109.47171 * 287.03464 * 3 2 1 26 26 H 1.08997 * 110.72030 * 324.78619 * 6 4 3 27 27 H 1.09004 * 110.71583 * 87.88442 * 6 4 3 28 28 H 1.09001 * 109.98827 * 263.04355 * 7 6 4 29 29 H 1.09000 * 109.76980 * 141.89188 * 7 6 4 30 30 H 1.08996 * 109.46987 * 59.99737 * 11 9 8 31 31 H 1.09004 * 109.46858 * 299.99744 * 11 9 8 32 32 H 1.08996 * 109.47435 * 59.99992 * 12 11 9 33 33 H 1.08996 * 109.47029 * 299.99870 * 12 11 9 34 34 H 1.09003 * 109.46825 * 60.00325 * 13 12 11 35 35 H 1.08996 * 109.47396 * 299.99898 * 13 12 11 36 36 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 37 37 H 1.09001 * 110.36371 * 94.93664 * 22 8 7 38 38 H 1.08993 * 110.37125 * 217.15345 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4067 -0.3237 5 1 2.6818 2.1494 0.3183 6 6 2.9368 1.7460 -1.8218 7 6 4.0416 2.7861 -2.1030 8 7 5.0905 2.5933 -1.0911 9 6 6.2204 3.3200 -0.9828 10 8 7.0169 3.0750 -0.1015 11 6 6.4943 4.4369 -1.9567 12 6 7.8324 5.0952 -1.6145 13 6 8.1107 6.2288 -2.6037 14 6 9.4290 6.8768 -2.2671 15 1 10.0100 6.5165 -1.4310 16 6 9.8929 7.9304 -3.0259 17 7 9.1853 8.3695 -4.0437 18 14 11.5273 8.7332 -2.6091 19 1 11.3024 9.8459 -1.6516 20 1 12.1481 9.2650 -3.8489 21 1 12.4308 7.7271 -1.9954 22 6 4.6987 1.4778 -0.2105 23 1 -1.0503 -0.0003 0.0003 24 1 3.0096 -0.6996 -0.7520 25 1 3.0094 -0.3002 0.9826 26 1 3.0700 0.8593 -2.4415 27 1 1.9492 2.1798 -1.9788 28 1 3.6330 3.7937 -2.0263 29 1 4.4537 2.6259 -3.0993 30 1 5.6976 5.1779 -1.8931 31 1 6.5362 4.0343 -2.9688 32 1 8.6289 4.3540 -1.6785 33 1 7.7910 5.4977 -0.6024 34 1 7.3142 6.9702 -2.5401 35 1 8.1523 5.8260 -3.6157 36 1 8.3368 7.9524 -4.2603 37 1 5.1477 0.5464 -0.5556 38 1 4.9963 1.6835 0.8176 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862576879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:52 Heat of formation + Delta-G solvation = -11.254297 kcal Electronic energy + Delta-G solvation = -17293.860005 eV Core-core repulsion = 14522.661973 eV Total energy + Delta-G solvation = -2771.198032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11253 -37.92550 -34.76064 -34.44871 -32.25999 -31.67671 -29.82813 -28.14024 -26.45442 -23.81089 -22.84435 -21.05620 -20.50501 -19.11602 -18.43971 -17.16249 -16.46955 -16.37158 -15.49947 -14.76143 -14.47621 -14.41682 -13.69100 -13.66497 -13.51689 -13.13742 -12.95272 -12.72020 -12.37411 -11.82307 -11.47673 -11.44767 -11.34485 -11.09385 -10.86737 -10.68467 -10.53187 -10.41767 -10.07659 -9.82228 -9.78631 -9.50970 -8.66654 -8.47890 -8.26823 -6.31128 -3.98961 2.43745 2.50587 2.85632 3.01942 3.48227 3.52169 3.68226 3.89285 4.22134 4.30555 4.52723 4.59938 4.94162 4.94963 5.00300 5.06903 5.30164 5.32427 5.45809 5.46105 5.52018 5.56215 5.61477 5.66685 5.67741 5.77888 5.90537 6.12542 6.28190 6.61433 6.79004 7.01501 7.27794 7.46670 7.55124 7.59119 8.29595 8.35860 8.54198 8.95176 9.72751 11.09849 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.064385 B = 0.003191 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.778861 B = 8772.104317 C = 9085.716530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C -0.002 4.002 4 C -0.098 4.098 5 H 0.089 0.911 6 C -0.126 4.126 7 C 0.100 3.900 8 N -0.628 5.628 9 C 0.529 3.471 10 O -0.536 6.536 11 C -0.134 4.134 12 C -0.088 4.088 13 C 0.007 3.993 14 C -0.599 4.599 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.285 1.285 21 H -0.288 1.288 22 C 0.110 3.890 23 H 0.216 0.784 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.268 0.732 37 H 0.068 0.932 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.591 -16.706 4.918 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.183 4.183 3 C -0.039 4.039 4 C -0.117 4.117 5 H 0.107 0.893 6 C -0.164 4.164 7 C -0.023 4.023 8 N -0.364 5.364 9 C 0.320 3.680 10 O -0.412 6.412 11 C -0.174 4.174 12 C -0.126 4.126 13 C -0.030 4.030 14 C -0.637 4.637 15 H 0.068 0.932 16 C -0.191 4.191 17 N -0.553 5.553 18 Si 0.900 3.100 19 H -0.215 1.215 20 H -0.210 1.210 21 H -0.214 1.214 22 C -0.013 4.013 23 H 0.233 0.767 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.992 -15.577 4.934 22.863 hybrid contribution -1.478 -1.249 0.399 1.976 sum -17.470 -16.826 5.333 24.835 Atomic orbital electron populations 1.24913 0.95975 1.00589 1.01316 1.23003 0.94400 1.00581 1.00293 1.18651 0.84932 0.96830 1.03522 1.22360 0.95200 0.96743 0.97413 0.89263 1.22724 0.98692 0.99247 0.95695 1.22023 0.88220 0.99657 0.92380 1.48610 1.20974 1.34543 1.32323 1.20929 0.78960 0.82389 0.85749 1.90687 1.45580 1.69196 1.35708 1.21836 1.02059 0.95412 0.98079 1.21322 0.92460 0.98245 1.00604 1.19260 0.97101 0.92714 0.93884 1.22110 1.05752 1.18945 1.16898 0.93179 1.25865 1.04092 0.95282 0.93812 1.70761 1.14678 1.42535 1.27365 0.83510 0.74844 0.75762 0.75878 1.21471 1.21033 1.21450 1.22177 0.92880 0.90294 0.95961 0.76721 0.89089 0.88998 0.90295 0.89969 0.91132 0.91068 0.89521 0.89504 0.92508 0.92520 0.97537 0.97519 0.92193 0.91394 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.53 19.25 29.55 0.57 -0.96 16 2 C -0.18 -1.46 13.08 -37.12 -0.49 -1.94 16 3 C 0.00 -0.02 5.22 -29.52 -0.15 -0.17 16 4 C -0.10 -0.76 2.98 -88.47 -0.26 -1.03 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.13 -0.92 6.16 -24.90 -0.15 -1.07 16 7 C 0.10 0.96 6.48 -3.07 -0.02 0.94 16 8 N -0.63 -8.14 3.33 -170.54 -0.57 -8.71 16 9 C 0.53 9.08 7.85 -10.98 -0.09 9.00 16 10 O -0.54 -11.25 16.24 5.55 0.09 -11.16 16 11 C -0.13 -2.33 4.89 -27.88 -0.14 -2.47 16 12 C -0.09 -1.98 4.44 -26.73 -0.12 -2.10 16 13 C 0.01 0.19 4.28 -27.88 -0.12 0.08 16 14 C -0.60 -17.83 9.11 -34.44 -0.31 -18.15 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 17 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 18 Si 1.07 26.19 29.90 -169.99 -5.08 21.11 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 C 0.11 1.15 6.38 -2.53 -0.02 1.13 16 23 H 0.22 0.89 7.80 -54.08 -0.42 0.47 16 24 H 0.09 0.50 7.97 -51.93 -0.41 0.09 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 35 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 36 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 37 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 38 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -35.20 323.94 -7.53 -42.73 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -6.21 Total: -4.47 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.40 Total: -16.46 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.19 Total: -36.62 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.20 -7.53 -42.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862576879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.476 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds