Wall clock time and date at job start Mon Mar 30 2020 21:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38092 * 119.95798 * 2 1 4 4 C 1.38526 * 120.40431 * 180.02562 * 3 2 1 5 5 C 1.37800 * 120.30564 * 0.23300 * 4 3 2 6 6 C 1.39731 * 119.90317 * 359.46935 * 5 4 3 7 7 C 1.47403 * 120.19732 * 180.27436 * 6 5 4 8 8 O 1.21509 * 119.99949 * 180.27086 * 7 6 5 9 9 O 1.34753 * 120.00233 * 0.27911 * 7 6 5 10 10 C 1.38665 * 119.95368 * 179.97438 * 2 1 3 11 11 O 1.35644 * 120.15604 * 359.97438 * 10 2 1 12 12 C 1.42896 * 117.00412 * 89.99340 * 11 10 2 13 13 C 1.53001 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46768 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00402 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99745 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99846 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99803 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47006 * 90.00368 * 18 16 14 20 20 H 1.48495 * 109.46863 * 210.00082 * 18 16 14 21 21 H 1.48497 * 109.47019 * 330.00167 * 18 16 14 22 22 H 1.09005 * 109.46674 * 89.99856 * 1 2 3 23 23 H 1.08992 * 109.47122 * 210.00187 * 1 2 3 24 24 H 1.08999 * 109.46777 * 330.01014 * 1 2 3 25 25 H 1.08001 * 119.80070 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.84391 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.05100 * 179.72400 * 5 4 3 28 28 H 0.96696 * 116.99877 * 180.02562 * 9 7 6 29 29 H 1.08993 * 109.47299 * 300.00636 * 12 11 10 30 30 H 1.09003 * 109.46620 * 60.00198 * 12 11 10 31 31 H 1.08993 * 109.47478 * 300.00501 * 13 12 11 32 32 H 1.09000 * 109.46675 * 60.00448 * 13 12 11 33 33 H 0.96998 * 119.99758 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5818 1.2072 -0.0005 5 6 4.2864 0.0230 -0.0059 6 6 3.6017 -1.1950 0.0004 7 6 4.3489 -2.4656 0.0008 8 8 3.7498 -3.5228 0.0013 9 8 5.6964 -2.4549 0.0008 10 6 2.1994 -1.2014 0.0005 11 8 1.5234 -2.3774 0.0016 12 6 1.1994 -2.9407 -1.2711 13 6 0.4431 -4.2553 -1.0694 14 6 0.1020 -4.8496 -2.4116 15 1 0.3957 -4.3409 -3.3178 16 6 -0.5850 -6.0430 -2.4826 17 7 -0.8831 -6.5614 -3.6540 18 14 -1.0924 -6.9233 -0.9151 19 1 -2.4402 -6.4581 -0.5002 20 1 -1.1276 -8.3877 -1.1591 21 1 -0.1127 -6.6240 0.1599 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5137 25 1 1.6526 2.1295 -0.0004 26 1 4.1119 2.1482 -0.0009 27 1 5.3663 0.0362 -0.0108 28 1 6.1422 -3.3129 0.0007 29 1 0.5736 -2.2437 -1.8283 30 1 2.1168 -3.1307 -1.8284 31 1 1.0685 -4.9526 -0.5120 32 1 -0.4742 -4.0649 -0.5122 33 1 -1.3661 -7.4011 -3.7039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037729661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:11 Heat of formation + Delta-G solvation = -111.630492 kcal Electronic energy + Delta-G solvation = -18081.311203 eV Core-core repulsion = 15072.208776 eV Total energy + Delta-G solvation = -3009.102427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56520 -39.06413 -37.18012 -35.76934 -33.25876 -32.85590 -31.05671 -29.84365 -26.90260 -25.09768 -24.33450 -21.58623 -21.05024 -20.61985 -17.76658 -17.72459 -16.86790 -16.33502 -16.05140 -15.49182 -14.92295 -14.51064 -14.14311 -13.91801 -13.81989 -13.22766 -13.01315 -12.51115 -12.35994 -11.99404 -11.95311 -11.61550 -11.36385 -11.19712 -11.14656 -10.54489 -10.20911 -10.04218 -9.82236 -9.26631 -9.19278 -8.98159 -8.53344 -8.51732 -6.05592 -4.04856 0.66279 1.19027 2.67535 3.09717 3.34492 3.41409 3.50636 3.55598 4.18704 4.47423 4.70956 4.78138 4.97291 5.21411 5.24626 5.29468 5.51751 5.66352 5.73293 5.77544 6.02188 6.10243 6.15320 6.23741 6.29729 6.45011 6.58366 6.60935 6.68524 7.20739 7.42997 7.73475 8.02859 8.08422 8.48451 8.95805 9.55749 11.07219 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024985 B = 0.006279 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.406945 B = 4457.984033 C = 5149.483784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 C -0.073 4.073 4 C -0.148 4.148 5 C -0.057 4.057 6 C -0.153 4.153 7 C 0.514 3.486 8 O -0.475 6.475 9 O -0.522 6.522 10 C 0.177 3.823 11 O -0.330 6.330 12 C 0.098 3.902 13 C -0.006 4.006 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.071 3.929 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.412 0.588 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.020 0.980 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 16.056 8.451 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.166 4.166 5 C -0.075 4.075 6 C -0.155 4.155 7 C 0.356 3.644 8 O -0.360 6.360 9 O -0.334 6.334 10 C 0.132 3.868 11 O -0.247 6.247 12 C 0.025 3.975 13 C -0.043 4.043 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.186 1.186 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.270 0.730 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.154 15.844 8.500 20.177 hybrid contribution 0.157 -1.013 0.496 1.139 sum 9.311 14.831 8.996 19.688 Atomic orbital electron populations 1.20727 0.89824 1.03401 1.03008 1.20266 0.97458 0.91916 1.02545 1.21193 0.94230 0.97284 0.96435 1.21057 0.94114 0.98072 1.03376 1.21316 1.00410 0.90746 0.95076 1.19515 0.92702 0.91560 1.11741 1.20695 0.80287 0.89608 0.73823 1.91056 1.69267 1.32451 1.43274 1.84517 1.21301 1.40943 1.86678 1.18713 0.88097 0.87053 0.92984 1.85940 1.73407 1.32969 1.32386 1.22861 0.98293 0.95782 0.80552 1.19535 0.95114 0.91209 0.98454 1.20870 1.36736 1.06829 0.91483 0.90975 1.24916 0.95135 0.96795 0.96165 1.69900 1.40524 1.19875 1.23693 0.86769 0.79541 0.78723 0.84363 1.20135 1.21274 1.18601 0.90794 0.90224 0.91464 0.85181 0.85190 0.84449 0.73004 0.93799 0.93536 0.95036 0.96210 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.79 36.01 0.35 -1.08 16 2 C -0.12 -1.69 5.89 -104.52 -0.62 -2.30 16 3 C -0.07 -0.79 9.68 -39.53 -0.38 -1.17 16 4 C -0.15 -1.48 10.02 -39.64 -0.40 -1.88 16 5 C -0.06 -0.67 9.61 -39.18 -0.38 -1.05 16 6 C -0.15 -2.39 5.89 -104.86 -0.62 -3.00 16 7 C 0.51 8.43 8.26 34.46 0.28 8.72 16 8 O -0.47 -9.82 14.81 -26.59 -0.39 -10.21 16 9 O -0.52 -6.24 12.68 -40.64 -0.52 -6.75 16 10 C 0.18 3.03 5.71 -38.67 -0.22 2.81 16 11 O -0.33 -6.84 7.52 -40.51 -0.30 -7.14 16 12 C 0.10 2.19 5.36 37.16 0.20 2.39 16 13 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 14 C -0.52 -15.40 9.66 -34.44 -0.33 -15.73 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 18 Si 0.88 22.51 27.47 -169.99 -4.67 17.85 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.15 7.53 -51.93 -0.39 0.76 16 24 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.14 1.33 7.61 -52.49 -0.40 0.93 16 28 H 0.41 3.22 9.11 45.56 0.42 3.63 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.08 7.51 -51.93 -0.39 0.69 16 31 H 0.03 0.86 7.20 -51.93 -0.37 0.48 16 32 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -34.96 290.24 -6.29 -41.25 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.23 Total: -1.42 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.33 Total: -10.53 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.21 Total: -24.11 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.96 -6.29 -41.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037729661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.378 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds