Wall clock time and date at job start Mon Mar 30 2020 21:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35983 * 116.99688 * 2 1 4 4 C 1.38723 * 120.00168 * 0.02562 * 3 2 1 5 5 C 1.38111 * 119.99911 * 180.02562 * 4 3 2 6 6 C 1.38721 * 119.99965 * 359.97438 * 5 4 3 7 7 O 1.35983 * 119.99708 * 180.02562 * 6 5 4 8 8 C 1.42894 * 117.00148 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00199 * 0.02562 * 6 5 4 10 10 C 1.50703 * 120.00110 * 179.97438 * 9 6 5 11 11 C 1.50701 * 109.46992 * 85.00183 * 10 9 6 12 12 O 1.21435 * 119.99584 * 0.02562 * 11 10 9 13 13 C 1.41021 * 120.00342 * 179.97438 * 11 10 9 14 14 H 1.08002 * 119.99576 * 353.74620 * 13 11 10 15 15 C 1.40452 * 120.00199 * 173.73813 * 13 11 10 16 16 N 1.30524 * 120.00094 * 6.26620 * 15 13 11 17 17 Si 1.86802 * 120.00148 * 186.25936 * 15 13 11 18 18 H 1.48501 * 109.46958 * 94.99074 * 17 15 13 19 19 H 1.48505 * 109.47267 * 214.98668 * 17 15 13 20 20 H 1.48501 * 109.47035 * 334.99251 * 17 15 13 21 21 C 1.38154 * 120.00007 * 0.23415 * 9 6 5 22 22 H 1.08995 * 109.47027 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47020 * 300.00097 * 1 2 3 24 24 H 1.08998 * 109.47356 * 59.99693 * 1 2 3 25 25 H 1.07995 * 120.00122 * 359.97438 * 4 3 2 26 26 H 1.07998 * 119.99948 * 179.97438 * 5 4 3 27 27 H 1.08994 * 109.47421 * 299.99650 * 8 7 6 28 28 H 1.09008 * 109.47250 * 60.00149 * 8 7 6 29 29 H 1.09005 * 109.47455 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.46903 * 325.00612 * 10 9 6 31 31 H 1.08998 * 109.46848 * 204.99998 * 10 9 6 32 32 H 0.97002 * 120.00150 * 179.97438 * 16 15 13 33 33 H 1.07996 * 119.99936 * 179.72520 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3751 0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3031 3.6782 -0.0005 7 8 3.9204 4.8899 -0.0005 8 6 3.0804 6.0459 0.0006 9 6 4.0584 2.5153 -0.0011 10 6 5.5634 2.5942 -0.0022 11 6 6.0596 2.7441 1.4128 12 8 5.2680 2.7827 2.3329 13 6 7.4432 2.8386 1.6686 14 1 8.1514 2.7025 0.8647 15 6 7.9001 3.1098 2.9687 16 7 7.0544 3.1532 3.9620 17 14 9.7183 3.4083 3.2765 18 1 9.9904 4.8680 3.2577 19 1 10.0940 2.8518 4.6011 20 1 10.5158 2.7423 2.2155 21 6 3.4312 1.2843 -0.0060 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.2123 2.3185 0.0005 26 1 1.3295 4.5114 0.0000 27 1 2.4505 6.0383 -0.8888 28 1 2.4518 6.0375 0.8912 29 1 3.6982 6.9440 0.0009 30 1 5.8816 3.4539 -0.5919 31 1 5.9746 1.6831 -0.4368 32 1 7.3700 3.3401 4.8599 33 1 4.0195 0.3786 -0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:39 Heat of formation + Delta-G solvation = -91.632950 kcal Electronic energy + Delta-G solvation = -18094.595572 eV Core-core repulsion = 15086.360303 eV Total energy + Delta-G solvation = -3008.235269 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03090 -38.54580 -36.80776 -35.67025 -32.64098 -31.67073 -29.55796 -27.94538 -27.07344 -26.52472 -25.46837 -21.78716 -21.20146 -19.30930 -17.45736 -17.05636 -16.37243 -16.16144 -15.51381 -15.18953 -14.94213 -14.41374 -14.10625 -13.47140 -13.43868 -12.97862 -12.45876 -12.37336 -12.14295 -12.06734 -11.66553 -11.29959 -11.23240 -11.12471 -11.04616 -10.38214 -10.21220 -10.10754 -10.02936 -9.98155 -8.80871 -8.35856 -7.30086 -7.11872 -6.11909 -4.76790 1.79793 2.01515 3.11216 3.19758 3.23754 3.58350 3.86808 4.10617 4.27844 4.37443 5.05554 5.17410 5.23980 5.27121 5.38389 5.48374 5.51382 5.55618 5.66554 5.76834 5.93811 5.95059 6.30887 6.42220 6.63364 6.70447 6.72330 6.83518 7.06658 7.26953 7.36692 7.70324 8.00953 8.20065 8.94702 9.01999 10.47024 10.71414 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.006200 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.125572 B = 4514.969925 C = 5160.083479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.087 3.913 4 C -0.187 4.187 5 C -0.175 4.175 6 C 0.105 3.895 7 O -0.303 6.303 8 C 0.031 3.969 9 C -0.023 4.023 10 C -0.123 4.123 11 C 0.375 3.625 12 O -0.535 6.535 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.085 3.915 16 N -0.743 5.743 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.110 4.110 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.271 0.729 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 0.589 -8.210 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.043 3.957 4 C -0.206 4.206 5 C -0.193 4.193 6 C 0.060 3.940 7 O -0.216 6.216 8 C -0.065 4.065 9 C -0.024 4.024 10 C -0.161 4.161 11 C 0.268 3.732 12 O -0.423 6.423 13 C -0.570 4.570 14 H 0.087 0.913 15 C -0.138 4.138 16 N -0.372 5.372 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.128 4.128 22 H 0.112 0.888 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.910 0.481 -7.603 12.500 hybrid contribution 0.359 0.482 0.127 0.614 sum -9.551 0.963 -7.475 12.167 Atomic orbital electron populations 1.22928 0.79449 1.03168 1.00894 1.86052 1.20485 1.27244 1.89729 1.18781 0.92133 0.83753 1.01013 1.20747 0.99081 0.91803 1.08935 1.20838 0.93178 0.97921 1.07404 1.18663 0.90384 0.85437 0.99552 1.86178 1.34683 1.11888 1.88894 1.22934 0.95783 0.87349 1.00410 1.18991 0.96535 0.89269 0.97588 1.21207 0.88953 1.02123 1.03842 1.19319 0.89643 0.78176 0.86043 1.90412 1.58158 1.48145 1.45579 1.20754 0.94179 1.47534 0.94560 0.91331 1.25976 0.98995 0.92929 0.95870 1.69977 1.35476 1.31682 1.00068 0.86435 0.83232 0.79198 0.78433 1.19624 1.20344 1.18587 1.20076 0.90922 0.97575 1.04271 0.88831 0.93048 0.93223 0.86073 0.85912 0.93539 0.93150 0.88750 0.90125 0.90785 0.91848 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.31 10.50 -19.69 -0.21 -5.52 16 3 C 0.09 1.62 6.69 -39.24 -0.26 1.35 16 4 C -0.19 -3.13 9.03 -39.45 -0.36 -3.49 16 5 C -0.17 -3.08 9.03 -39.45 -0.36 -3.43 16 6 C 0.10 2.18 6.66 -39.24 -0.26 1.92 16 7 O -0.30 -6.21 9.63 -19.69 -0.19 -6.40 16 8 C 0.03 0.45 9.81 101.05 0.99 1.44 16 9 C -0.02 -0.51 4.38 -104.49 -0.46 -0.97 16 10 C -0.12 -2.88 5.42 -29.03 -0.16 -3.04 16 11 C 0.38 10.84 6.89 -33.25 -0.23 10.61 16 12 O -0.54 -17.44 14.58 5.42 0.08 -17.36 16 13 C -0.54 -15.38 9.22 -37.69 -0.35 -15.72 16 14 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 15 C 0.08 2.37 5.50 -17.27 -0.09 2.27 16 16 N -0.74 -22.18 11.75 55.57 0.65 -21.53 16 17 Si 0.90 20.00 29.57 -169.99 -5.03 14.97 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.11 -2.26 9.61 -39.45 -0.38 -2.64 16 22 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 25 H 0.12 1.61 6.29 -52.49 -0.33 1.28 16 26 H 0.12 1.77 6.29 -52.49 -0.33 1.44 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.05 0.71 7.66 -51.92 -0.40 0.31 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.80 7.69 -51.93 -0.40 1.40 16 31 H 0.07 1.56 8.05 -51.93 -0.42 1.14 16 32 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 33 H 0.13 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 288.86 15.07 4.35 4.35 Total: -1.00 -35.40 288.86 -5.14 -40.54 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.88 Total: 1.29 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.92 Total: -10.35 kcal Atomic # 7 Polarization: -22.18 SS G_CDS: 0.65 Total: -21.53 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.32 Total: -29.27 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.40 -5.14 -40.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.094 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds