Wall clock time and date at job start Mon Mar 30 2020 21:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46906 * 110.99711 * 2 1 4 4 H 1.09002 * 110.45947 * 34.30095 * 3 2 1 5 5 C 1.51145 * 110.50996 * 156.91170 * 3 2 1 6 6 C 1.37657 * 132.83843 * 298.77854 * 5 3 2 7 7 C 1.38381 * 119.95160 * 180.02562 * 6 5 3 8 8 C 1.38559 * 119.81310 * 359.97438 * 7 6 5 9 9 F 1.35103 * 119.83379 * 179.97438 * 8 7 6 10 10 C 1.38126 * 120.33125 * 0.02562 * 8 7 6 11 11 C 1.39014 * 106.31334 * 118.78254 * 5 3 2 12 12 N 1.39386 * 110.22928 * 359.97438 * 11 5 3 13 13 C 1.37148 * 123.85684 * 179.97438 * 12 11 5 14 14 H 1.07997 * 119.99819 * 33.59693 * 13 12 11 15 15 C 1.38883 * 120.00093 * 213.58908 * 13 12 11 16 16 N 1.31425 * 119.99912 * 20.07381 * 15 13 12 17 17 Si 1.86805 * 120.00062 * 200.06774 * 15 13 12 18 18 H 1.48504 * 109.46886 * 90.00732 * 17 15 13 19 19 H 1.48501 * 109.46971 * 210.00387 * 17 15 13 20 20 H 1.48493 * 109.47047 * 330.00218 * 17 15 13 21 21 C 1.34672 * 112.32344 * 359.92557 * 12 11 5 22 22 O 1.21290 * 126.59998 * 180.02562 * 21 12 11 23 23 H 1.08997 * 109.47062 * 59.99656 * 1 2 3 24 24 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46682 * 299.99733 * 1 2 3 26 26 H 1.00894 * 111.00360 * 123.95540 * 2 1 3 27 27 H 1.08005 * 120.02649 * 0.02562 * 6 5 3 28 28 H 1.08001 * 120.09738 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.94842 * 180.02562 * 10 8 7 30 30 H 0.97000 * 120.00157 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3443 2.0295 0.5755 5 6 3.4010 1.3993 0.5551 6 6 3.9306 1.0598 1.7795 7 6 5.2891 1.1941 2.0059 8 6 6.1118 1.6700 0.9976 9 9 7.4381 1.8018 1.2184 10 6 5.5825 2.0113 -0.2317 11 6 4.2145 1.8781 -0.4654 12 7 3.4534 2.1503 -1.6009 13 6 3.9756 2.6361 -2.7724 14 1 4.9683 2.3452 -3.0826 15 6 3.2277 3.5018 -3.5597 16 7 2.2211 4.1639 -3.0347 17 14 3.6527 3.7255 -5.3650 18 1 2.9009 2.7350 -6.1769 19 1 3.2843 5.0987 -5.7938 20 1 5.1105 3.5206 -5.5594 21 6 2.1466 1.8811 -1.4175 22 8 1.2582 2.0216 -2.2311 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8307 -0.5261 0.7813 27 1 3.2863 0.6888 2.5630 28 1 5.7071 0.9288 2.9658 29 1 6.2294 2.3812 -1.0134 30 1 1.6989 4.7689 -3.5845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042067514.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:13 Heat of formation + Delta-G solvation = -26.652951 kcal Electronic energy + Delta-G solvation = -18232.971090 eV Core-core repulsion = 15136.386012 eV Total energy + Delta-G solvation = -3096.585078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.45102 -40.61495 -37.23013 -35.44321 -34.60430 -32.50263 -30.59419 -29.05682 -26.72909 -25.39514 -23.55529 -21.96913 -21.04640 -20.01351 -17.77909 -16.68797 -16.04355 -15.85584 -15.42956 -15.05932 -15.02774 -14.46379 -14.24480 -13.93694 -13.35835 -13.16041 -12.97946 -12.53794 -12.36212 -11.82673 -11.71720 -11.51993 -11.17171 -11.08808 -10.91170 -10.52790 -10.35605 -9.79495 -9.10765 -8.67768 -8.32715 -7.97423 -7.12967 -6.48718 -4.19905 1.63168 1.80699 3.15354 3.22359 3.23778 3.56068 3.93946 4.37490 4.41230 4.69921 4.86126 4.98075 5.03816 5.24615 5.40390 5.56054 5.63832 5.70154 5.78870 6.05449 6.21276 6.26429 6.44580 6.60904 6.70328 6.93030 7.15690 7.25747 7.39789 7.60120 7.80740 8.42992 8.69163 9.09301 9.71715 10.56951 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.010162 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.435722 B = 2754.705755 C = 4127.953552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.666 5.666 3 C 0.100 3.900 4 H 0.080 0.920 5 C -0.199 4.199 6 C -0.028 4.028 7 C -0.227 4.227 8 C 0.140 3.860 9 F -0.147 7.147 10 C -0.199 4.199 11 C 0.213 3.787 12 N -0.377 5.377 13 C -0.370 4.370 14 H 0.098 0.902 15 C 0.061 3.939 16 N -0.820 5.820 17 Si 0.928 3.072 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.520 3.480 22 O -0.471 6.471 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.019 0.981 26 H 0.343 0.657 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -5.080 8.308 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.298 5.298 3 C -0.013 4.013 4 H 0.098 0.902 5 C -0.204 4.204 6 C -0.048 4.048 7 C -0.248 4.248 8 C 0.120 3.880 9 F -0.125 7.125 10 C -0.222 4.222 11 C 0.107 3.893 12 N -0.080 5.080 13 C -0.496 4.496 14 H 0.116 0.884 15 C -0.151 4.151 16 N -0.451 5.451 17 Si 0.753 3.247 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.192 1.192 21 C 0.307 3.693 22 O -0.342 6.342 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.162 0.838 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.758 -4.837 6.893 8.455 hybrid contribution 0.257 0.591 0.142 0.660 sum 1.015 -4.245 7.035 8.279 Atomic orbital electron populations 1.22328 0.87272 1.01553 1.01181 1.60160 1.07968 1.11777 1.49899 1.20895 0.92829 0.91123 0.96455 0.90248 1.19794 0.94738 1.10668 0.95175 1.19768 0.93829 0.96664 0.94498 1.20541 0.93494 1.11406 0.99388 1.17198 0.76897 0.99717 0.94197 1.91443 1.32080 1.93791 1.95227 1.20019 0.93995 1.10846 0.97374 1.18237 0.91516 0.92982 0.86574 1.41677 1.06342 1.50968 1.08986 1.19358 1.04332 1.29175 0.96750 0.88393 1.25331 0.95673 0.93488 1.00656 1.69914 1.17400 1.21029 1.36733 0.85942 0.79028 0.77681 0.82039 1.19835 1.20721 1.19194 1.19887 0.82610 0.78905 0.87885 1.90568 1.43281 1.50268 1.50068 0.90485 0.91549 0.96206 0.83824 0.86044 0.85532 0.84946 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.54 60.07 0.63 1.03 16 2 N -0.67 -11.45 6.69 -115.89 -0.78 -12.22 16 3 C 0.10 2.00 3.30 -69.46 -0.23 1.77 16 4 H 0.08 1.53 7.85 -51.93 -0.41 1.12 16 5 C -0.20 -3.80 5.73 -104.33 -0.60 -4.40 16 6 C -0.03 -0.43 9.92 -39.74 -0.39 -0.83 16 7 C -0.23 -3.48 10.04 -39.41 -0.40 -3.88 16 8 C 0.14 2.46 7.28 -39.50 -0.29 2.17 16 9 F -0.15 -2.48 17.26 2.25 0.04 -2.44 16 10 C -0.20 -3.99 9.77 -39.18 -0.38 -4.38 16 11 C 0.21 4.74 6.64 -83.70 -0.56 4.18 16 12 N -0.38 -9.75 2.81 -58.72 -0.16 -9.91 16 13 C -0.37 -10.04 9.52 -14.93 -0.14 -10.19 16 14 H 0.10 2.52 7.91 -52.49 -0.42 2.10 16 15 C 0.06 1.67 4.77 -17.49 -0.08 1.58 16 16 N -0.82 -23.52 11.23 55.49 0.62 -22.90 16 17 Si 0.93 20.91 29.60 -169.99 -5.03 15.87 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C 0.52 13.38 7.11 -10.69 -0.08 13.30 16 22 O -0.47 -13.51 14.81 5.55 0.08 -13.43 16 23 H 0.08 1.37 7.59 -51.93 -0.39 0.98 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.26 8.08 -51.93 -0.42 -0.16 16 26 H 0.34 4.87 8.42 -39.30 -0.33 4.54 16 27 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.13 2.63 8.04 -52.48 -0.42 2.21 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 268.76 15.07 4.05 4.05 Total: -1.00 -30.67 268.76 -6.48 -37.15 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.79 Total: 3.47 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.51 Total: 0.36 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.32 Total: -45.04 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.67 -6.48 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042067514.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.497 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds