Wall clock time and date at job start Mon Mar 30 2020 21:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99690 * 2 1 4 4 N 1.46910 * 109.46799 * 125.00565 * 3 2 1 5 5 C 1.46901 * 110.99913 * 288.35976 * 4 3 2 6 6 C 1.50700 * 109.46913 * 160.55645 * 5 4 3 7 7 H 1.07996 * 119.99979 * 4.46610 * 6 5 4 8 8 C 1.37877 * 119.99892 * 184.47443 * 6 5 4 9 9 N 1.31510 * 120.00297 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99923 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47018 * 90.00147 * 10 8 6 12 12 H 1.48497 * 109.47323 * 210.00585 * 10 8 6 13 13 H 1.48501 * 109.47267 * 330.00317 * 10 8 6 14 14 C 1.46896 * 110.99913 * 164.40662 * 4 3 2 15 15 C 1.53004 * 109.47185 * 293.95081 * 14 4 3 16 16 C 1.50705 * 109.46943 * 179.97438 * 15 14 4 17 17 C 1.34665 * 126.58955 * 84.96295 * 16 15 14 18 18 N 1.34125 * 108.02423 * 180.02562 * 17 16 15 19 19 C 1.30498 * 109.25348 * 359.72096 * 18 17 16 20 20 N 1.35050 * 108.70079 * 0.44600 * 19 18 17 21 21 C 1.46493 * 126.39877 * 179.82374 * 20 19 18 22 22 H 1.07996 * 119.99907 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99631 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00115 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47707 * 5.00515 * 3 2 1 26 26 H 1.08996 * 109.47374 * 244.99875 * 3 2 1 27 27 H 1.08998 * 109.46991 * 280.55888 * 5 4 3 28 28 H 1.09001 * 109.47063 * 40.55779 * 5 4 3 29 29 H 0.96996 * 120.00568 * 180.02562 * 9 8 6 30 30 H 1.08997 * 109.47032 * 173.95627 * 14 4 3 31 31 H 1.09002 * 109.47315 * 53.95097 * 14 4 3 32 32 H 1.09005 * 109.46723 * 60.00659 * 15 14 4 33 33 H 1.08994 * 109.47324 * 300.00404 * 15 14 4 34 34 H 1.08004 * 125.99076 * 0.03076 * 17 16 15 35 35 H 1.08001 * 125.65807 * 180.29383 * 19 18 17 36 36 H 1.09000 * 109.47348 * 269.68896 * 21 20 19 37 37 H 1.09003 * 109.47246 * 149.69116 * 21 20 19 38 38 H 1.08997 * 109.47464 * 29.68757 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2752 1.4805 2.4057 6 6 3.1609 1.0350 3.5407 7 1 4.1831 0.7458 3.3464 8 6 2.6661 0.9966 4.8270 9 7 3.4390 0.6083 5.8176 10 14 0.8981 1.4974 5.1630 11 1 0.0172 0.3070 5.0538 12 1 0.7959 2.0652 6.5313 13 1 0.4757 2.5184 4.1708 14 6 3.9961 2.3954 0.9690 15 6 4.8903 2.0727 -0.2299 16 6 5.9155 3.1641 -0.4001 17 6 7.1010 3.2574 0.2318 18 7 7.7132 4.3712 -0.1967 19 6 6.9546 4.9686 -1.0746 20 7 5.8204 4.2513 -1.2262 21 6 4.7003 4.5734 -2.1138 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5399 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1317 0.0897 26 1 2.6213 1.4027 -0.9313 27 1 2.0008 2.5258 2.5476 28 1 1.3740 0.8677 2.3859 29 1 3.0909 0.5809 6.7225 30 1 4.6065 2.4636 1.8694 31 1 3.4906 3.3462 0.7997 32 1 4.2798 2.0046 -1.1304 33 1 5.3957 1.1220 -0.0608 34 1 7.4907 2.5579 0.9565 35 1 7.1929 5.8860 -1.5922 36 1 3.9775 5.1887 -1.5780 37 1 4.2201 3.6515 -2.4420 38 1 5.0698 5.1196 -2.9816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602835360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:19 Heat of formation + Delta-G solvation = 88.796072 kcal Electronic energy + Delta-G solvation = -18070.237905 eV Core-core repulsion = 15335.671134 eV Total energy + Delta-G solvation = -2734.566771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.95291 -37.57557 -34.06424 -33.52233 -32.79455 -31.49181 -28.32709 -27.18657 -26.95407 -24.76165 -22.45516 -21.29417 -20.34366 -19.65685 -19.32979 -16.98406 -16.81930 -15.73099 -15.45841 -14.76272 -14.60066 -14.20580 -13.79945 -13.63384 -13.33176 -13.01162 -12.95705 -12.82254 -12.48114 -12.33622 -12.04641 -11.38113 -11.29198 -10.85603 -10.62081 -10.48729 -10.43060 -9.92929 -9.79364 -9.47978 -9.29511 -8.99490 -8.54794 -8.15298 -7.47270 -6.03332 -4.00088 2.14638 2.60099 2.83514 3.28458 3.33068 3.36011 3.37356 4.42834 4.57357 4.60696 4.78046 4.93633 5.02864 5.13743 5.26054 5.28915 5.33690 5.50286 5.61339 5.65043 5.79663 5.83055 5.94425 6.00021 6.16983 6.28343 6.53235 6.60679 6.84186 6.87912 6.93591 6.94541 7.05505 7.28231 7.61758 7.85960 7.97472 8.20671 8.65995 9.06518 9.58484 11.09914 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.006222 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.522576 B = 4499.053763 C = 5492.524084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 C 0.072 3.928 4 N -0.522 5.522 5 C 0.164 3.836 6 C -0.506 4.506 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.071 3.929 15 C -0.042 4.042 16 C -0.011 4.011 17 C -0.024 4.024 18 N -0.494 5.494 19 C 0.167 3.833 20 N -0.462 5.462 21 C 0.073 3.927 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.026 0.974 26 H 0.072 0.928 27 H -0.014 1.014 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.093 0.907 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.171 0.829 35 H 0.201 0.799 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 6.068 -17.277 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.140 4.140 3 C -0.056 4.056 4 N -0.246 5.246 5 C 0.038 3.962 6 C -0.544 4.544 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.538 5.538 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.195 1.195 14 C -0.057 4.057 15 C -0.080 4.080 16 C -0.125 4.125 17 C -0.172 4.172 18 N -0.212 5.212 19 C -0.114 4.114 20 N -0.147 5.147 21 C -0.070 4.070 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.004 0.996 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.189 0.811 35 H 0.217 0.783 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.143 5.918 -16.881 17.889 hybrid contribution -2.299 0.832 0.057 2.445 sum -2.442 6.749 -16.824 18.291 Atomic orbital electron populations 1.23727 0.96047 1.01246 1.03789 1.22917 0.95363 0.98931 0.96815 1.21310 0.94582 0.94270 0.95451 1.61953 1.14766 1.45699 1.02156 1.20184 0.94572 0.94544 0.86899 1.21018 0.99957 1.43911 0.89528 0.90024 1.24878 0.97185 0.94996 0.96193 1.69885 1.35973 1.47986 0.99983 0.86916 0.86183 0.79315 0.77661 1.20113 1.21205 1.19507 1.21967 0.94063 0.91330 0.98350 1.20164 0.94185 0.95010 0.98691 1.21375 0.99988 0.92626 0.98536 1.22148 0.93148 0.97914 1.03956 1.70248 1.30905 1.08119 1.11931 1.24825 0.84385 1.00355 1.01882 1.45289 1.16534 1.19837 1.33002 1.21988 0.88534 1.02901 0.93594 0.88720 0.89288 0.86873 0.95553 0.91003 0.99616 0.95420 0.92691 0.88871 0.96591 0.91937 0.88560 0.81132 0.78287 0.90643 0.89742 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.02 14.32 29.01 0.42 -2.60 16 2 C -0.12 -1.91 8.74 -36.03 -0.31 -2.22 16 3 C 0.07 1.15 5.28 -4.97 -0.03 1.13 16 4 N -0.52 -10.35 4.37 -237.51 -1.04 -11.38 16 5 C 0.16 3.93 3.65 -4.98 -0.02 3.91 16 6 C -0.51 -14.28 9.16 -34.44 -0.32 -14.60 16 7 H 0.08 2.50 7.90 -52.49 -0.41 2.09 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 10 Si 0.87 21.65 27.38 -169.99 -4.65 17.00 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.50 6.67 56.52 0.38 -6.12 16 14 C 0.07 1.28 4.77 -3.82 -0.02 1.26 16 15 C -0.04 -0.60 5.51 -27.88 -0.15 -0.75 16 16 C -0.01 -0.15 6.21 -81.60 -0.51 -0.66 16 17 C -0.02 -0.39 11.79 -17.82 -0.21 -0.60 16 18 N -0.49 -7.97 11.25 -14.66 -0.16 -8.13 16 19 C 0.17 2.11 12.56 -90.37 -1.14 0.97 16 20 N -0.46 -5.61 3.15 -121.37 -0.38 -6.00 16 21 C 0.07 0.57 11.00 59.84 0.66 1.22 16 22 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 23 H 0.09 1.22 7.84 -52.49 -0.41 0.81 16 24 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 25 H 0.03 0.43 7.71 -51.93 -0.40 0.03 16 26 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 27 H -0.01 -0.34 7.37 -51.93 -0.38 -0.72 16 28 H 0.03 0.67 6.30 -51.93 -0.33 0.35 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.09 1.96 7.31 -51.93 -0.38 1.58 16 31 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.06 0.77 5.24 -51.93 -0.27 0.50 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 35 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.61 7.12 -51.93 -0.37 0.24 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -33.15 315.26 -8.24 -41.39 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.81 Total: 0.27 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.72 Total: -11.04 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.81 Total: -52.37 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.65 Total: 17.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.15 -8.24 -41.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602835360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.191 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds