Wall clock time and date at job start Mon Mar 30 2020 21:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34505 * 125.67470 * 2 1 4 4 C 1.39284 * 107.19028 * 179.80540 * 3 2 1 5 5 C 1.41594 * 126.56158 * 180.25669 * 4 3 2 6 6 H 1.07999 * 120.00072 * 180.11780 * 5 4 3 7 7 C 1.39692 * 119.99829 * 0.12669 * 5 4 3 8 8 N 1.31031 * 120.00015 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47511 * 89.99862 * 9 7 5 11 11 H 1.48503 * 109.47237 * 209.99702 * 9 7 5 12 12 H 1.48505 * 109.47081 * 329.99517 * 9 7 5 13 13 C 1.41889 * 106.88102 * 0.36230 * 4 3 2 14 14 C 1.50703 * 125.97449 * 179.89760 * 13 4 3 15 15 N 1.46899 * 109.47107 * 269.71203 * 14 13 4 16 16 C 1.46843 * 111.00049 * 294.21372 * 15 14 13 17 17 C 1.53043 * 109.52446 * 174.16274 * 16 15 14 18 18 C 1.53115 * 109.28035 * 59.17281 * 17 16 15 19 19 C 1.53119 * 109.16391 * 302.35079 * 18 17 16 20 20 C 1.46842 * 111.00041 * 169.99728 * 15 14 13 21 21 N 1.30313 * 108.04929 * 359.63272 * 13 4 3 22 22 H 1.09005 * 109.47206 * 269.97830 * 1 2 3 23 23 H 1.08995 * 109.47659 * 29.97978 * 1 2 3 24 24 H 1.09004 * 109.47100 * 149.98276 * 1 2 3 25 25 H 1.08000 * 126.40719 * 0.03714 * 3 2 1 26 26 H 0.97000 * 119.99736 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47152 * 149.71291 * 14 13 4 28 28 H 1.09001 * 109.46980 * 29.71391 * 14 13 4 29 29 H 1.09004 * 109.46019 * 294.17499 * 16 15 14 30 30 H 1.08999 * 109.46883 * 54.14319 * 16 15 14 31 31 H 1.09007 * 109.49669 * 299.23395 * 17 16 15 32 32 H 1.08996 * 109.50102 * 179.12000 * 17 16 15 33 33 H 1.08996 * 109.52692 * 182.44132 * 18 17 16 34 34 H 1.09007 * 109.52268 * 62.25145 * 18 17 16 35 35 H 1.09002 * 109.50021 * 297.71564 * 19 18 17 36 36 H 1.09001 * 109.50518 * 177.59261 * 19 18 17 37 37 H 1.08998 * 109.46877 * 305.85973 * 20 15 14 38 38 H 1.09002 * 109.46302 * 65.82604 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2493 1.0926 0.0000 4 6 3.5703 0.6510 0.0045 5 6 4.7308 1.4623 0.0112 6 1 5.7092 1.0051 0.0123 7 6 4.6101 2.8540 0.0165 8 7 3.4230 3.4086 0.0148 9 14 6.1411 3.9242 0.0261 10 1 6.5515 4.2136 -1.3713 11 1 5.8497 5.1987 0.7303 12 1 7.2391 3.2112 0.7270 13 6 3.5306 -0.7673 -0.0014 14 6 4.7250 -1.6863 -0.0015 15 7 5.1129 -1.9848 -1.3866 16 6 4.0693 -2.7593 -2.0701 17 6 4.4399 -2.9263 -3.5456 18 6 5.7872 -3.6463 -3.6501 19 6 6.8463 -2.8438 -2.8893 20 6 6.4059 -2.6793 -1.4329 21 7 2.2808 -1.1362 -0.0009 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5141 25 1 1.9170 2.1203 0.0006 26 1 3.3392 4.3750 0.0182 27 1 4.4702 -2.6133 0.5122 28 1 5.5557 -1.2026 0.5123 29 1 3.9818 -3.7410 -1.6044 30 1 3.1173 -2.2343 -1.9920 31 1 4.5140 -1.9454 -4.0153 32 1 3.6728 -3.5145 -4.0491 33 1 6.0758 -3.7288 -4.6979 34 1 5.7027 -4.6422 -3.2151 35 1 6.9583 -1.8617 -3.3487 36 1 7.7985 -3.3732 -2.9240 37 1 7.1511 -2.0961 -0.8918 38 1 6.3075 -3.6613 -0.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675056863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:29 Heat of formation + Delta-G solvation = 66.404275 kcal Electronic energy + Delta-G solvation = -18647.971411 eV Core-core repulsion = 15912.433658 eV Total energy + Delta-G solvation = -2735.537753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.38275 -38.23584 -33.74905 -33.24615 -31.49559 -30.42977 -28.49349 -27.39230 -25.45888 -23.67327 -22.65151 -22.10686 -19.64122 -19.27849 -18.07790 -16.71081 -15.61849 -15.25698 -14.49997 -14.19754 -14.08940 -14.05910 -13.89772 -13.16163 -12.79769 -12.67630 -12.34917 -12.04226 -11.81786 -11.42047 -11.26479 -11.16267 -11.00904 -10.87102 -10.82500 -10.41808 -10.32026 -10.05647 -9.99874 -9.57045 -9.11060 -8.82036 -7.80208 -7.55489 -6.94633 -6.28954 -3.85655 3.19089 3.27950 3.32289 3.40780 3.97602 4.24628 4.29268 4.70536 5.10713 5.16118 5.21191 5.54984 5.60761 5.69110 5.74333 5.87612 5.89099 5.90757 5.94759 6.00315 6.05896 6.12368 6.15936 6.20015 6.37054 6.42443 6.43556 6.62500 6.67267 7.03192 7.41295 7.61048 7.70880 7.75734 7.94828 8.04619 8.54037 8.95091 9.21320 9.30630 9.52918 10.72628 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016610 B = 0.008455 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.296747 B = 3310.795224 C = 4567.461687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.393 5.393 3 C -0.056 4.056 4 C -0.027 4.027 5 C -0.412 4.412 6 H 0.069 0.931 7 C 0.054 3.946 8 N -0.850 5.850 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.018 3.982 14 C 0.160 3.840 15 N -0.524 5.524 16 C 0.060 3.940 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.116 4.116 20 C 0.057 3.943 21 N -0.338 5.338 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.191 0.809 26 H 0.268 0.732 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -8.363 -3.696 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.181 5.181 3 C -0.198 4.198 4 C -0.037 4.037 5 C -0.447 4.447 6 H 0.088 0.912 7 C -0.154 4.154 8 N -0.484 5.484 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.147 4.147 14 C 0.031 3.969 15 N -0.250 5.250 16 C -0.068 4.068 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.071 4.071 21 N -0.164 5.164 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.207 0.793 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.583 -8.626 -3.924 9.494 hybrid contribution 0.950 0.649 0.429 1.228 sum 1.533 -7.977 -3.495 8.843 Atomic orbital electron populations 1.21329 0.77631 1.02171 1.01014 1.47594 1.04367 1.04578 1.61585 1.23945 0.90479 0.91945 1.13416 1.17901 0.92940 0.89239 1.03633 1.18730 0.92487 0.89883 1.43573 0.91239 1.25521 0.96562 0.98453 0.94841 1.69447 1.23085 1.11171 1.44685 0.86250 0.82295 0.79100 0.78491 1.20250 1.21029 1.19319 1.21821 0.91298 0.94698 1.06871 1.20018 0.94187 0.94887 0.87814 1.61792 1.01868 1.45135 1.16179 1.22037 0.96302 0.95206 0.93263 1.21588 0.96261 1.00863 0.96715 1.21564 0.95830 0.98533 0.99680 1.21572 0.97368 1.00845 0.95562 1.22036 0.92237 0.96178 0.96638 1.76236 1.02234 1.09996 1.27906 0.93162 0.91054 0.91563 0.79266 0.92131 0.95580 0.89699 0.96081 0.89676 0.91134 0.92336 0.92416 0.92776 0.90944 0.92167 0.90819 0.95801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.15 11.44 59.84 0.68 2.83 16 2 N -0.39 -9.36 3.98 -67.19 -0.27 -9.62 16 3 C -0.06 -1.48 10.46 -15.99 -0.17 -1.65 16 4 C -0.03 -0.76 5.94 -106.83 -0.63 -1.39 16 5 C -0.41 -11.40 9.15 -37.76 -0.35 -11.75 16 6 H 0.07 1.86 7.36 -52.49 -0.39 1.48 16 7 C 0.05 1.43 5.49 -17.35 -0.10 1.33 16 8 N -0.85 -23.01 10.33 55.54 0.57 -22.44 16 9 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.02 0.46 5.91 -81.84 -0.48 -0.03 16 14 C 0.16 3.34 5.33 -4.98 -0.03 3.31 16 15 N -0.52 -10.01 4.65 -236.11 -1.10 -11.11 16 16 C 0.06 1.08 5.31 -3.83 -0.02 1.06 16 17 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 18 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 19 C -0.12 -1.56 6.09 -26.65 -0.16 -1.72 16 20 C 0.06 0.89 5.46 -3.84 -0.02 0.87 16 21 N -0.34 -8.28 11.57 34.00 0.39 -7.89 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.19 5.18 5.75 -52.49 -0.30 4.88 16 26 H 0.27 6.75 8.30 -40.82 -0.34 6.41 16 27 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 28 H 0.08 1.75 7.45 -51.93 -0.39 1.36 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.78 6.43 -51.93 -0.33 1.45 16 31 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -30.14 305.07 -8.45 -38.59 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.03 Total: 3.26 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.59 Total: -10.73 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.40 Total: -51.07 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.14 -8.45 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.990 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds