Wall clock time and date at job start Mon Mar 30 2020 21:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34505 * 125.67470 * 2 1 4 4 C 1.39284 * 107.19028 * 179.80540 * 3 2 1 5 5 C 1.41594 * 126.56158 * 180.25669 * 4 3 2 6 6 H 1.07999 * 120.00072 * 180.11780 * 5 4 3 7 7 C 1.39692 * 119.99829 * 0.12669 * 5 4 3 8 8 N 1.31031 * 120.00015 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47511 * 89.99862 * 9 7 5 11 11 H 1.48503 * 109.47237 * 209.99702 * 9 7 5 12 12 H 1.48505 * 109.47081 * 329.99517 * 9 7 5 13 13 C 1.41889 * 106.88102 * 0.36230 * 4 3 2 14 14 C 1.50703 * 125.97449 * 179.89760 * 13 4 3 15 15 N 1.46899 * 109.47107 * 269.71203 * 14 13 4 16 16 C 1.46843 * 111.00049 * 294.21372 * 15 14 13 17 17 C 1.53043 * 109.52446 * 174.16274 * 16 15 14 18 18 C 1.53115 * 109.28035 * 59.17281 * 17 16 15 19 19 C 1.53119 * 109.16391 * 302.35079 * 18 17 16 20 20 C 1.46842 * 111.00041 * 169.99728 * 15 14 13 21 21 N 1.30313 * 108.04929 * 359.63272 * 13 4 3 22 22 H 1.09005 * 109.47206 * 269.97830 * 1 2 3 23 23 H 1.08995 * 109.47659 * 29.97978 * 1 2 3 24 24 H 1.09004 * 109.47100 * 149.98276 * 1 2 3 25 25 H 1.08000 * 126.40719 * 0.03714 * 3 2 1 26 26 H 0.97000 * 119.99736 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47152 * 149.71291 * 14 13 4 28 28 H 1.09001 * 109.46980 * 29.71391 * 14 13 4 29 29 H 1.09004 * 109.46019 * 294.17499 * 16 15 14 30 30 H 1.08999 * 109.46883 * 54.14319 * 16 15 14 31 31 H 1.09007 * 109.49669 * 299.23395 * 17 16 15 32 32 H 1.08996 * 109.50102 * 179.12000 * 17 16 15 33 33 H 1.08996 * 109.52692 * 182.44132 * 18 17 16 34 34 H 1.09007 * 109.52268 * 62.25145 * 18 17 16 35 35 H 1.09002 * 109.50021 * 297.71564 * 19 18 17 36 36 H 1.09001 * 109.50518 * 177.59261 * 19 18 17 37 37 H 1.08998 * 109.46877 * 305.85973 * 20 15 14 38 38 H 1.09002 * 109.46302 * 65.82604 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2493 1.0926 0.0000 4 6 3.5703 0.6510 0.0045 5 6 4.7308 1.4623 0.0112 6 1 5.7092 1.0051 0.0123 7 6 4.6101 2.8540 0.0165 8 7 3.4230 3.4086 0.0148 9 14 6.1411 3.9242 0.0261 10 1 6.5515 4.2136 -1.3713 11 1 5.8497 5.1987 0.7303 12 1 7.2391 3.2112 0.7270 13 6 3.5306 -0.7673 -0.0014 14 6 4.7250 -1.6863 -0.0015 15 7 5.1129 -1.9848 -1.3866 16 6 4.0693 -2.7593 -2.0701 17 6 4.4399 -2.9263 -3.5456 18 6 5.7872 -3.6463 -3.6501 19 6 6.8463 -2.8438 -2.8893 20 6 6.4059 -2.6793 -1.4329 21 7 2.2808 -1.1362 -0.0009 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5141 25 1 1.9170 2.1203 0.0006 26 1 3.3392 4.3750 0.0182 27 1 4.4702 -2.6133 0.5122 28 1 5.5557 -1.2026 0.5123 29 1 3.9818 -3.7410 -1.6044 30 1 3.1173 -2.2343 -1.9920 31 1 4.5140 -1.9454 -4.0153 32 1 3.6728 -3.5145 -4.0491 33 1 6.0758 -3.7288 -4.6979 34 1 5.7027 -4.6422 -3.2151 35 1 6.9583 -1.8617 -3.3487 36 1 7.7985 -3.3732 -2.9240 37 1 7.1511 -2.0961 -0.8918 38 1 6.3075 -3.6613 -0.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675056863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:28 Heat of formation + Delta-G solvation = 47.624505 kcal Electronic energy + Delta-G solvation = -18648.785763 eV Core-core repulsion = 15912.433658 eV Total energy + Delta-G solvation = -2736.352105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22650 -39.60999 -35.45802 -34.97512 -33.09732 -31.67671 -30.48904 -28.95135 -27.26734 -25.35595 -23.89251 -23.54675 -21.56510 -20.51866 -19.92052 -18.68927 -17.19500 -16.97695 -16.02563 -15.86300 -15.66861 -15.44106 -15.21880 -14.52719 -14.34208 -14.06842 -13.99470 -13.56650 -13.27136 -13.09195 -13.05791 -12.82905 -12.73016 -12.48901 -12.11350 -12.06960 -11.62815 -11.53724 -11.23566 -11.22049 -11.08025 -10.76175 -9.58228 -9.07365 -8.97465 -8.28680 -5.92622 1.41160 1.45670 1.53034 1.57891 2.25128 2.32868 2.43317 3.18430 3.68850 3.96107 3.97910 4.05268 4.14191 4.24057 4.39724 4.44498 4.55077 4.55701 4.67975 4.69635 4.72741 4.75987 4.91826 5.02182 5.07287 5.10814 5.12968 5.25397 5.35164 5.41893 5.52854 5.68315 5.93378 6.04544 6.23654 6.38879 6.56346 6.98527 7.19747 7.25643 7.55968 8.73556 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016610 B = 0.008455 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.296747 B = 3310.795224 C = 4567.461687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.397 5.397 3 C -0.072 4.072 4 C -0.066 4.066 5 C -0.441 4.441 6 H 0.066 0.934 7 C 0.009 3.991 8 N -0.874 5.874 9 Si 0.981 3.019 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.263 1.263 13 C 0.012 3.988 14 C 0.165 3.835 15 N -0.544 5.544 16 C 0.064 3.936 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.113 4.113 20 C 0.054 3.946 21 N -0.340 5.340 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.181 0.819 26 H 0.273 0.727 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 -9.361 -4.344 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.185 5.185 3 C -0.214 4.214 4 C -0.076 4.076 5 C -0.475 4.475 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.508 5.508 9 Si 0.805 3.195 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.187 1.187 13 C -0.153 4.153 14 C 0.036 3.964 15 N -0.269 5.269 16 C -0.064 4.064 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.073 4.073 21 N -0.166 5.166 22 H 0.087 0.913 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.198 0.802 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.536 -9.645 -4.574 10.785 hybrid contribution 0.536 0.922 0.633 1.240 sum 2.072 -8.723 -3.941 9.794 Atomic orbital electron populations 1.21722 0.74342 1.04032 1.02823 1.47998 1.06317 1.03483 1.60742 1.23830 0.91108 0.92346 1.14161 1.18349 0.93552 0.90829 1.04843 1.18940 0.92511 0.90928 1.45158 0.91563 1.26363 0.99760 0.99368 0.94078 1.69531 1.24780 1.11716 1.44754 0.85188 0.78485 0.77297 0.78552 1.19878 1.20130 1.18679 1.22300 0.92442 0.94433 1.06174 1.19958 0.92638 0.94425 0.89349 1.61746 1.03557 1.46762 1.14885 1.21969 0.94577 0.94651 0.95231 1.21571 0.98533 1.00555 0.94424 1.21547 0.93866 0.98508 1.01077 1.21585 0.98981 1.00632 0.93834 1.22168 0.90254 0.96411 0.98473 1.76176 1.02399 1.10449 1.27532 0.91272 0.89338 0.89622 0.80240 0.91623 0.94676 0.90113 0.95302 0.93313 0.93131 0.90582 0.90273 0.91415 0.92523 0.89158 0.90819 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.84 11.44 127.77 1.46 5.30 16 2 N -0.40 -19.05 3.98 -366.49 -1.46 -20.51 16 3 C -0.07 -3.91 10.46 84.54 0.88 -3.03 16 4 C -0.07 -3.74 5.94 -21.30 -0.13 -3.87 16 5 C -0.44 -25.04 9.15 23.45 0.21 -24.83 16 6 H 0.07 3.66 7.36 -2.91 -0.02 3.64 16 7 C 0.01 0.50 5.49 85.16 0.47 0.97 16 8 N -0.87 -48.13 10.33 21.79 0.23 -47.90 16 9 Si 0.98 41.98 29.56 68.60 2.03 44.01 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 C 0.01 0.62 5.91 43.69 0.26 0.88 16 14 C 0.17 6.99 5.33 85.56 0.46 7.45 16 15 N -0.54 -20.66 4.65 -900.93 -4.19 -24.85 16 16 C 0.06 2.27 5.31 86.33 0.46 2.73 16 17 C -0.11 -3.25 6.09 30.65 0.19 -3.07 16 18 C -0.11 -2.55 6.00 30.67 0.18 -2.37 16 19 C -0.11 -2.75 6.09 30.65 0.19 -2.56 16 20 C 0.05 1.59 5.46 86.33 0.47 2.06 16 21 N -0.34 -16.85 11.57 -46.35 -0.54 -17.38 16 22 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 23 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 24 H 0.09 2.58 8.14 -2.38 -0.02 2.57 16 25 H 0.18 10.15 5.75 -2.91 -0.02 10.13 16 26 H 0.27 13.89 8.30 -92.71 -0.77 13.12 16 27 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 28 H 0.08 3.40 7.45 -2.39 -0.02 3.38 16 29 H 0.03 0.96 8.14 -2.38 -0.02 0.95 16 30 H 0.05 2.07 6.43 -2.39 -0.02 2.06 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.13 8.02 -2.39 -0.02 2.11 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.07 305.07 2.20 -63.87 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.03 Total: 23.11 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 5.10 Total: -20.34 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.96 Total: -110.65 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.07 2.20 -63.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.493 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds