Wall clock time and date at job start Mon Mar 30 2020 21:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47569 * 2 1 4 4 N 1.28753 * 124.73567 * 90.23701 * 3 2 1 5 5 C 1.32557 * 117.14264 * 180.20388 * 4 3 2 6 6 C 1.48198 * 122.99179 * 179.82204 * 5 4 3 7 7 N 1.32342 * 125.29928 * 179.97438 * 6 5 4 8 8 N 1.40446 * 107.09526 * 180.13956 * 7 6 5 9 9 H 0.97001 * 126.92688 * 179.89627 * 8 7 6 10 10 C 1.37138 * 106.15114 * 359.62290 * 8 7 6 11 11 C 1.40279 * 126.19640 * 180.25276 * 10 8 7 12 12 H 1.07994 * 120.00114 * 359.97438 * 11 10 8 13 13 C 1.40189 * 119.99821 * 180.02562 * 11 10 8 14 14 N 1.30680 * 120.00013 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99801 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46916 * 89.99873 * 15 13 11 17 17 H 1.48499 * 109.47067 * 209.99335 * 15 13 11 18 18 H 1.48497 * 109.47390 * 329.99940 * 15 13 11 19 19 N 1.32980 * 107.60502 * 0.23296 * 10 8 7 20 20 C 1.35021 * 114.02144 * 359.55516 * 5 4 3 21 21 S 1.70915 * 124.73515 * 269.98179 * 3 2 1 22 22 H 1.08997 * 109.46520 * 300.00113 * 1 2 3 23 23 H 1.09004 * 109.46813 * 59.99910 * 1 2 3 24 24 H 1.08992 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47235 * 240.00102 * 2 1 3 26 26 H 1.09000 * 109.47454 * 120.00416 * 2 1 3 27 27 H 0.97005 * 120.00404 * 180.02562 * 14 13 11 28 28 H 1.07993 * 126.07231 * 180.25398 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2812 2.1110 1.0581 5 6 2.7146 3.3514 0.8829 6 6 3.0363 4.2602 2.0084 7 7 3.4716 5.5040 1.8865 8 7 3.6549 6.0064 3.1852 9 1 3.9680 6.8916 3.4288 10 6 3.2961 4.9955 4.0395 11 6 3.3142 5.0497 5.4411 12 1 3.6336 5.9513 5.9426 13 6 2.9186 3.9332 6.1909 14 7 2.5325 2.8421 5.5842 15 14 2.9434 4.0052 8.0574 16 1 1.6302 4.4916 8.5514 17 1 3.2054 2.6486 8.6016 18 1 4.0142 4.9326 8.5028 19 7 2.9274 3.9546 3.2985 20 6 2.8424 3.7112 -0.4121 21 16 2.3576 2.3387 -1.4046 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.2585 2.0696 6.1030 28 1 3.1819 4.6700 -0.7752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695348818.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:50 Heat of formation + Delta-G solvation = 88.684030 kcal Electronic energy + Delta-G solvation = -15236.494093 eV Core-core repulsion = 12607.583234 eV Total energy + Delta-G solvation = -2628.910859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.058 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78323 -40.48410 -35.64493 -34.98860 -32.71516 -31.74853 -30.21649 -27.73385 -26.63707 -24.58953 -22.51539 -21.70797 -20.47250 -19.14923 -18.72783 -17.45530 -16.64539 -16.27810 -16.03677 -15.38371 -15.25206 -14.87312 -14.77259 -14.03450 -13.57539 -13.22878 -12.94001 -12.90119 -12.55763 -12.51486 -12.19114 -11.95381 -11.85210 -11.37853 -10.81162 -10.46054 -10.36262 -9.99573 -9.91795 -9.33461 -8.49926 -6.77555 -0.34131 0.40837 0.67103 1.00825 1.43797 1.46226 1.60752 1.96020 2.19077 2.45622 2.79112 3.16241 3.46380 3.76991 4.08181 4.28139 4.35413 4.37792 4.64870 4.78484 5.01559 5.04643 5.14802 5.19496 5.37161 5.56304 5.97524 6.23166 6.24340 6.72786 6.91374 7.21022 8.12921 8.43793 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.006258 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.882059 B = 4473.260626 C = 5405.059808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.037 3.963 4 N -0.482 5.482 5 C 0.134 3.866 6 C 0.253 3.747 7 N -0.401 5.401 8 N -0.554 5.554 9 H 0.431 0.569 10 C 0.375 3.625 11 C -0.472 4.472 12 H 0.109 0.891 13 C 0.031 3.969 14 N -0.765 5.765 15 Si 1.007 2.993 16 H -0.261 1.261 17 H -0.270 1.270 18 H -0.248 1.248 19 N -0.569 5.569 20 C -0.239 4.239 21 S 0.202 5.798 22 H 0.032 0.968 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.122 0.878 26 H 0.084 0.916 27 H 0.284 0.716 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -5.053 -9.187 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.243 4.243 4 N -0.197 5.197 5 C 0.002 3.998 6 C -0.030 4.030 7 N -0.238 5.238 8 N -0.276 5.276 9 H 0.276 0.724 10 C 0.126 3.874 11 C -0.513 4.513 12 H 0.127 0.873 13 C -0.192 4.192 14 N -0.388 5.388 15 Si 0.825 3.175 16 H -0.186 1.186 17 H -0.195 1.195 18 H -0.171 1.171 19 N -0.305 5.305 20 C -0.382 4.382 21 S 0.456 5.544 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.140 0.860 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.530 -5.701 -10.345 12.079 hybrid contribution 0.540 1.545 2.013 2.594 sum -1.990 -4.156 -8.332 9.521 Atomic orbital electron populations 1.21750 0.92702 1.03771 1.01810 1.20450 0.97384 0.85439 1.05401 1.27773 1.02415 1.03327 0.90759 1.66037 1.14651 1.05670 1.33326 1.17380 1.02905 0.89642 0.89896 1.21707 0.98604 0.90476 0.92241 1.77717 1.34033 1.11555 1.00527 1.47946 1.61406 1.15456 1.02825 0.72434 1.21549 0.89837 0.82319 0.93714 1.18961 1.43691 1.02192 0.86479 0.87332 1.27030 0.91990 0.93391 1.06805 1.70179 1.25985 1.02673 1.39990 0.84856 0.80034 0.78953 0.73622 1.18561 1.19491 1.17149 1.71587 1.31843 1.27635 0.99462 1.27286 1.09946 1.05959 0.95003 1.83018 1.59395 1.02168 1.09794 0.94835 0.91339 0.88789 0.86014 0.89771 0.90536 0.79422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.90 71.98 0.71 -2.26 15 2 C -0.05 -1.08 6.51 29.85 0.19 -0.89 15 3 C 0.04 1.22 6.61 88.56 0.59 1.81 15 4 N -0.48 -22.19 10.55 -180.58 -1.90 -24.10 15 5 C 0.13 6.46 6.72 40.94 0.28 6.73 15 6 C 0.25 14.36 7.90 137.45 1.09 15.45 15 7 N -0.40 -21.48 12.68 -52.61 -0.67 -22.15 15 8 N -0.55 -28.71 7.58 -55.54 -0.42 -29.13 15 9 H 0.43 18.53 8.96 -213.10 -1.91 16.62 15 10 C 0.37 21.85 7.69 133.80 1.03 22.88 15 11 C -0.47 -25.45 9.47 23.24 0.22 -25.23 15 12 H 0.11 5.15 7.85 -2.91 -0.02 5.13 15 13 C 0.03 1.62 5.50 85.34 0.47 2.09 15 14 N -0.76 -43.46 11.92 21.87 0.26 -43.20 15 15 Si 1.01 37.70 29.56 68.60 2.03 39.73 15 16 H -0.26 -9.39 7.11 99.48 0.71 -8.69 15 17 H -0.27 -9.80 7.11 99.48 0.71 -9.09 15 18 H -0.25 -8.66 7.11 99.48 0.71 -7.95 15 19 N -0.57 -35.53 9.41 -187.26 -1.76 -37.29 15 20 C -0.24 -8.89 11.08 67.08 0.74 -8.14 15 21 S 0.20 5.35 23.16 -56.49 -1.31 4.04 15 22 H 0.03 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 15 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.12 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.28 14.58 8.29 -92.70 -0.77 13.81 15 28 H 0.19 6.41 8.06 -2.91 -0.02 6.38 15 Total: -1.00 -76.72 271.43 0.84 -75.88 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.70 Total: 23.79 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.31 Total: 12.43 kcal Atomic # 7 Polarization: -151.37 SS G_CDS: -4.50 Total: -155.87 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -1.31 Total: 4.04 kcal Total: -76.72 0.84 -75.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695348818.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.567 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds