Wall clock time and date at job start Mon Mar 30 2020 21:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00162 * 2 1 4 4 C 1.53004 * 109.47197 * 75.36210 * 3 2 1 5 5 H 1.08998 * 109.63863 * 304.01503 * 4 3 2 6 6 C 1.53022 * 109.64036 * 64.43082 * 4 3 2 7 7 C 1.50073 * 110.14658 * 169.11948 * 6 4 3 8 8 C 1.29438 * 124.07179 * 342.87485 * 7 6 4 9 9 C 1.50068 * 124.08210 * 0.46490 * 8 7 6 10 10 C 1.53028 * 110.13975 * 342.87072 * 9 8 7 11 11 N 1.36595 * 111.00333 * 236.04151 * 2 1 3 12 12 C 1.36931 * 120.00581 * 246.48723 * 11 2 1 13 13 H 1.08008 * 119.99844 * 16.42124 * 12 11 2 14 14 C 1.38815 * 120.00492 * 196.42165 * 12 11 2 15 15 N 1.31625 * 119.99420 * 19.66754 * 14 12 11 16 16 Si 1.86798 * 120.00192 * 199.66539 * 14 12 11 17 17 H 1.48494 * 109.47056 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46970 * 120.00192 * 16 14 12 19 19 H 1.48503 * 109.47047 * 240.00020 * 16 14 12 20 20 C 1.46501 * 119.99622 * 66.48569 * 11 2 1 21 21 C 1.47202 * 109.47348 * 88.23974 * 20 11 2 22 22 N 4.04612 * 123.29813 * 294.07448 * 2 1 3 23 23 H 1.09002 * 109.47363 * 60.00306 * 1 2 3 24 24 H 1.09006 * 109.47037 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47860 * 299.99835 * 1 2 3 26 26 H 1.08999 * 109.46810 * 315.36850 * 3 2 1 27 27 H 1.08993 * 109.47485 * 195.36071 * 3 2 1 28 28 H 1.09001 * 109.35746 * 48.91853 * 6 4 3 29 29 H 1.09000 * 109.36190 * 289.32548 * 6 4 3 30 30 H 1.07995 * 117.96006 * 162.58582 * 7 6 4 31 31 H 1.08007 * 117.95766 * 180.44564 * 8 7 6 32 32 H 1.08999 * 109.35662 * 222.66963 * 9 8 7 33 33 H 1.08991 * 109.24649 * 103.00770 * 9 8 7 34 34 H 1.08998 * 109.64583 * 289.74531 * 10 9 8 35 35 H 1.09009 * 109.80861 * 169.22529 * 10 9 8 36 36 H 0.97005 * 119.99538 * 180.02562 * 15 14 12 37 37 H 1.09008 * 109.47204 * 208.24232 * 20 11 2 38 38 H 1.09001 * 109.47409 * 328.23926 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8379 1.9782 1.3957 5 1 0.7924 1.9304 1.7001 6 6 2.7001 1.2027 2.3940 7 6 2.7655 1.9377 3.7008 8 6 2.4544 3.1855 3.8473 9 6 1.9752 4.0692 2.7330 10 6 2.3087 3.4379 1.3795 11 7 1.9585 -0.7123 -1.0577 12 6 2.6456 -1.8766 -0.8399 13 1 2.5788 -2.3720 0.1175 14 6 3.4280 -2.4202 -1.8496 15 7 3.8278 -1.6652 -2.8509 16 14 3.9134 -4.2229 -1.7871 17 1 3.3404 -4.8478 -0.5680 18 1 3.3915 -4.9180 -2.9911 19 1 5.3937 -4.3360 -1.7529 20 6 1.7485 -0.2306 -2.4252 21 6 2.8444 0.6782 -2.7992 22 7 3.6903 1.3795 -3.0877 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8900 26 1 1.4429 1.9727 -0.7220 27 1 3.0507 1.3555 -0.2722 28 1 3.7070 1.0911 1.9916 29 1 2.2665 0.2159 2.5559 30 1 3.0880 1.3902 4.5741 31 1 2.5449 3.6177 4.8330 32 1 2.4622 5.0414 2.8080 33 1 0.8961 4.1982 2.8155 34 1 3.3854 3.4739 1.2136 35 1 1.7971 3.9791 0.5834 36 1 4.3742 -2.0451 -3.5567 37 1 1.7297 -1.0784 -3.1102 38 1 0.7994 0.3025 -2.4809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697144053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:57 Heat of formation + Delta-G solvation = 93.484256 kcal Electronic energy + Delta-G solvation = -18816.903565 eV Core-core repulsion = 16082.540088 eV Total energy + Delta-G solvation = -2734.363476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.88122 -37.37225 -34.70672 -33.36935 -31.50001 -30.52719 -29.50590 -27.14370 -26.20801 -24.42983 -22.88744 -21.34030 -19.78615 -17.68376 -17.50341 -16.40434 -15.77250 -15.64622 -14.49777 -14.32648 -14.08606 -13.76499 -13.37125 -12.98393 -12.73280 -12.52227 -12.28917 -12.09003 -11.85906 -11.59897 -11.46681 -11.20214 -11.05324 -10.88466 -10.84385 -10.31305 -10.28093 -10.22788 -10.02632 -9.88692 -9.80713 -8.79215 -8.76987 -7.68031 -7.25544 -5.95577 -3.34589 2.48606 3.34495 3.41663 3.45295 3.94904 4.37952 4.44109 4.72437 4.94201 4.97462 5.20353 5.26533 5.44205 5.54362 5.59077 5.61179 5.70581 5.76752 5.87239 5.94647 6.01283 6.06145 6.16638 6.20902 6.29621 6.40205 6.42560 6.48998 6.50559 6.63237 6.83067 6.87459 6.99924 7.18454 7.76380 7.79821 8.43466 9.06547 9.22308 9.89961 10.22692 11.14765 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.006741 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.300310 B = 4152.759701 C = 4552.786233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.286 5.286 3 C 0.037 3.963 4 C -0.073 4.073 5 H 0.068 0.932 6 C -0.078 4.078 7 C -0.142 4.142 8 C -0.174 4.174 9 C -0.085 4.085 10 C -0.116 4.116 11 N -0.437 5.437 12 C -0.223 4.223 13 H 0.089 0.911 14 C -0.006 4.006 15 N -0.911 5.911 16 Si 0.920 3.080 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.292 1.292 20 C 0.239 3.761 21 C 0.252 3.748 22 N -0.507 5.507 23 H 0.018 0.982 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.259 0.741 37 H 0.116 0.884 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 5.964 8.661 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.098 5.098 3 C -0.092 4.092 4 C -0.093 4.093 5 H 0.086 0.914 6 C -0.115 4.115 7 C -0.160 4.160 8 C -0.192 4.192 9 C -0.122 4.122 10 C -0.155 4.155 11 N -0.249 5.249 12 C -0.352 4.352 13 H 0.106 0.894 14 C -0.204 4.204 15 N -0.556 5.556 16 Si 0.750 3.250 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.219 1.219 20 C 0.108 3.892 21 C -0.066 4.066 22 N -0.189 5.189 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.065 6.670 8.578 12.444 hybrid contribution -0.013 -0.620 -0.621 0.878 sum -6.078 6.049 7.958 11.699 Atomic orbital electron populations 1.22863 0.90020 1.01939 0.99149 1.62892 1.04983 1.10401 1.31498 1.22793 1.01245 0.90258 0.94863 1.21118 0.99502 0.93555 0.95132 0.91357 1.20395 1.00566 0.98994 0.91560 1.22271 0.99194 0.95699 0.98818 1.21953 1.02904 0.95676 0.98715 1.20378 1.00522 0.97807 0.93454 1.21640 1.01545 0.95913 0.96353 1.44005 1.63396 1.22819 0.94679 1.19262 1.21947 0.93700 1.00288 0.89368 1.24951 0.97649 0.99309 0.98481 1.69811 1.38378 1.33627 1.13824 0.85928 0.77666 0.83862 0.77544 1.20068 1.21493 1.21933 1.18659 0.87644 0.94170 0.88769 1.30224 0.94570 0.90306 0.91541 1.80800 1.11316 1.16500 1.10251 0.96326 0.91073 0.92134 0.95793 0.90547 0.90878 0.89771 0.88470 0.88721 0.91688 0.91401 0.91857 0.92092 0.93032 0.86662 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.39 60.06 0.56 0.71 16 2 N -0.29 -5.57 4.46 -121.13 -0.54 -6.11 16 3 C 0.04 0.68 3.14 -3.82 -0.01 0.67 16 4 C -0.07 -1.11 2.28 -90.41 -0.21 -1.32 16 5 H 0.07 0.99 6.79 -51.93 -0.35 0.63 16 6 C -0.08 -1.21 5.20 -28.17 -0.15 -1.36 16 7 C -0.14 -1.89 9.80 -35.90 -0.35 -2.24 16 8 C -0.17 -2.14 9.80 -35.90 -0.35 -2.49 16 9 C -0.08 -0.99 6.12 -28.17 -0.17 -1.16 16 10 C -0.12 -1.60 5.31 -26.52 -0.14 -1.74 16 11 N -0.44 -9.88 2.35 -62.77 -0.15 -10.03 16 12 C -0.22 -5.60 10.05 -15.06 -0.15 -5.75 16 13 H 0.09 2.21 7.90 -52.48 -0.41 1.80 16 14 C -0.01 -0.15 4.94 -17.43 -0.09 -0.23 16 15 N -0.91 -24.79 9.11 55.49 0.51 -24.29 16 16 Si 0.92 20.74 29.60 -169.99 -5.03 15.71 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 C 0.24 5.21 4.98 -6.83 -0.03 5.17 16 21 C 0.25 6.11 11.45 -20.76 -0.24 5.87 16 22 N -0.51 -13.14 18.54 42.16 0.78 -12.36 16 23 H 0.02 0.28 6.81 -51.93 -0.35 -0.07 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.84 6.80 -51.93 -0.35 0.49 16 26 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 27 H 0.08 1.71 7.36 -51.93 -0.38 1.32 16 28 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 29 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 30 H 0.10 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.09 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 35 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.12 2.66 6.59 -51.92 -0.34 2.31 16 38 H 0.05 0.98 6.67 -51.93 -0.35 0.63 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -28.32 305.83 -7.03 -35.35 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.88 Total: 0.98 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.33 Total: -3.87 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.60 Total: -52.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.32 -7.03 -35.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697144053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.835 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds