Wall clock time and date at job start Mon Mar 30 2020 21:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.52993 * 109.47378 * 66.04954 * 3 2 1 5 5 C 1.50696 * 109.47429 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00339 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99769 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47112 * 90.00199 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00310 * 9 7 5 12 12 H 1.48498 * 109.47011 * 329.99931 * 9 7 5 13 13 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 14 14 C 1.50694 * 109.47033 * 293.95020 * 13 2 1 15 15 C 1.34562 * 126.58258 * 95.02562 * 14 13 2 16 16 N 1.34011 * 108.03417 * 180.02562 * 15 14 13 17 17 C 1.30912 * 109.29718 * 0.09519 * 16 15 14 18 18 N 1.34815 * 108.60913 * 359.54244 * 17 16 15 19 19 C 1.47009 * 111.17469 * 180.02562 * 18 17 16 20 20 C 1.54390 * 105.59929 * 343.28830 * 19 18 17 21 21 C 1.51570 * 141.44189 * 179.77494 * 17 16 15 22 22 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 23 23 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 25 25 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 26 26 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 27 27 H 1.09004 * 109.46862 * 299.99897 * 4 3 2 28 28 H 1.09004 * 109.46998 * 59.99419 * 4 3 2 29 29 H 0.97000 * 120.00540 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46807 * 53.95411 * 13 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 13 2 1 32 32 H 1.07999 * 125.98655 * 0.05543 * 15 14 13 33 33 H 1.09012 * 110.39668 * 224.15249 * 19 18 17 34 34 H 1.08999 * 110.01142 * 102.23142 * 19 18 17 35 35 H 1.08994 * 110.97096 * 267.37659 * 20 19 18 36 36 H 1.09005 * 110.99772 * 143.62951 * 20 19 18 37 37 H 1.08991 * 110.48142 * 315.25112 * 21 17 16 38 38 H 1.09000 * 110.47363 * 77.74068 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1720 3.4642 1.3185 6 1 2.7199 3.8323 0.4637 7 6 1.9662 4.2817 2.4095 8 7 1.2985 3.8336 3.4502 9 14 2.6356 6.0256 2.4095 10 1 1.6186 6.9462 1.8408 11 1 2.9503 6.4350 3.8019 12 1 3.8700 6.0819 1.5861 13 6 1.9954 -0.7660 -1.1377 14 6 1.6370 -2.2204 -0.9729 15 6 0.5718 -2.8488 -1.5031 16 7 0.6142 -4.1323 -1.1200 17 6 1.6682 -4.3246 -0.3677 18 7 2.3373 -3.1593 -0.2586 19 6 3.5367 -3.3118 0.5777 20 6 3.3381 -4.6331 1.3512 21 6 2.3859 -5.4079 0.4125 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.0797 1.3445 -0.1083 26 1 1.5610 1.9274 -0.8309 27 1 0.5472 2.0845 1.4265 28 1 2.0659 1.5015 2.1491 29 1 1.1540 4.4085 4.2180 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 -0.1847 -2.3980 -2.1283 33 1 3.6234 -2.4771 1.2734 34 1 4.4247 -3.3730 -0.0513 35 1 2.8699 -4.4522 2.3188 36 1 4.2838 -5.1619 1.4705 37 1 1.6740 -5.9957 0.9920 38 1 2.9516 -6.0516 -0.2610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719375795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:10 Heat of formation + Delta-G solvation = 67.817115 kcal Electronic energy + Delta-G solvation = -18021.210897 eV Core-core repulsion = 15285.734410 eV Total energy + Delta-G solvation = -2735.476487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35984 -37.31440 -36.23321 -33.19892 -31.95798 -30.21912 -28.61295 -27.71941 -26.44967 -24.87202 -22.55457 -22.17547 -20.40661 -19.94898 -19.42716 -16.80970 -16.47675 -15.72649 -15.00095 -14.76340 -14.61746 -14.36353 -13.85721 -13.71430 -13.45850 -13.38859 -12.63587 -12.38408 -12.21467 -12.06754 -11.77822 -11.58226 -11.27707 -11.15156 -11.06430 -10.89791 -10.58210 -9.89632 -9.78160 -9.49196 -9.36415 -9.15714 -8.35793 -8.13676 -7.74431 -6.01885 -4.04712 2.10704 2.83450 3.20559 3.30126 3.36453 3.39388 3.83667 4.29577 4.40309 4.54099 4.59826 4.65286 4.95312 5.19283 5.30713 5.33951 5.36499 5.41620 5.47743 5.62987 5.68145 5.73603 5.83759 5.88309 5.98535 6.26417 6.40023 6.53282 6.58152 6.91783 6.95153 7.14753 7.45491 7.50624 7.75412 7.86079 8.04853 8.22425 8.40415 9.02553 9.59109 11.09466 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.004344 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.676606 B = 6444.207892 C = 6802.651642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.063 3.937 4 C 0.029 3.971 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.124 3.876 14 C 0.022 3.978 15 C -0.024 4.024 16 N -0.483 5.483 17 C 0.173 3.827 18 N -0.463 5.463 19 C 0.101 3.899 20 C -0.129 4.129 21 C -0.037 4.037 22 H 0.020 0.980 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.022 0.978 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -16.338 -6.363 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.064 4.064 4 C -0.008 4.008 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.006 4.006 14 C -0.093 4.093 15 C -0.173 4.173 16 N -0.202 5.202 17 C -0.089 4.089 18 N -0.147 5.147 19 C -0.021 4.021 20 C -0.167 4.167 21 C -0.077 4.077 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.187 0.813 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.921 -16.917 -5.923 18.348 hybrid contribution 0.578 2.173 -0.479 2.299 sum 4.499 -14.744 -6.402 16.692 Atomic orbital electron populations 1.22397 0.87547 1.01103 1.01193 1.62122 1.08240 1.15817 1.40297 1.22377 0.98371 0.84905 1.00698 1.19082 0.97026 0.93985 0.90736 1.21185 1.35247 0.97775 1.01971 0.92796 1.24990 0.95270 0.98463 0.95536 1.69972 1.40772 1.36410 1.06058 0.86595 0.79328 0.84853 0.77222 1.20665 1.21186 1.19895 1.20442 1.00169 0.86407 0.93533 1.20897 0.95559 0.92024 1.00838 1.21992 0.99225 0.89796 1.06272 1.69815 1.18283 1.17891 1.14219 1.24190 0.92980 0.89036 1.02710 1.46185 1.20999 1.09987 1.37491 1.22369 0.85801 1.00136 0.93800 1.22729 1.00854 0.94100 0.99030 1.20589 0.96802 0.94078 0.96186 0.96134 0.92145 0.90470 0.92286 0.95943 0.96365 0.95917 0.92971 0.92857 0.90661 0.81325 0.88396 0.89650 0.89313 0.88282 0.88754 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.12 60.06 0.55 1.01 16 2 N -0.54 -10.01 4.75 -244.37 -1.16 -11.17 16 3 C 0.06 1.32 4.90 -3.82 -0.02 1.31 16 4 C 0.03 0.76 4.90 -27.89 -0.14 0.62 16 5 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.12 1.91 5.52 -4.98 -0.03 1.88 16 14 C 0.02 0.33 5.98 -81.49 -0.49 -0.15 16 15 C -0.02 -0.37 10.67 -17.90 -0.19 -0.56 16 16 N -0.48 -7.92 11.26 -10.56 -0.12 -8.04 16 17 C 0.17 2.43 8.58 -154.85 -1.33 1.10 16 18 N -0.46 -6.48 3.61 -107.73 -0.39 -6.87 16 19 C 0.10 1.02 7.78 -3.04 -0.02 1.00 16 20 C -0.13 -0.94 7.17 -25.20 -0.18 -1.12 16 21 C -0.04 -0.33 6.86 -26.65 -0.18 -0.51 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 1.02 6.34 -51.93 -0.33 0.69 16 24 H 0.08 1.52 6.47 -51.93 -0.34 1.19 16 25 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 26 H 0.02 0.47 8.12 -51.93 -0.42 0.04 16 27 H 0.02 0.50 6.55 -51.93 -0.34 0.16 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -33.22 310.53 -9.73 -42.95 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.02 Total: -3.01 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.44 Total: -8.94 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.93 Total: -52.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.22 -9.73 -42.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719375795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.768 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds