Wall clock time and date at job start Mon Mar 30 2020 21:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.52993 * 109.47378 * 66.04954 * 3 2 1 5 5 C 1.50696 * 109.47429 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00339 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99769 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47112 * 90.00199 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00310 * 9 7 5 12 12 H 1.48498 * 109.47011 * 329.99931 * 9 7 5 13 13 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 14 14 C 1.50694 * 109.47033 * 293.95020 * 13 2 1 15 15 C 1.34562 * 126.58258 * 95.02562 * 14 13 2 16 16 N 1.34011 * 108.03417 * 180.02562 * 15 14 13 17 17 C 1.30912 * 109.29718 * 0.09519 * 16 15 14 18 18 N 1.34815 * 108.60913 * 359.54244 * 17 16 15 19 19 C 1.47009 * 111.17469 * 180.02562 * 18 17 16 20 20 C 1.54390 * 105.59929 * 343.28830 * 19 18 17 21 21 C 1.51570 * 141.44189 * 179.77494 * 17 16 15 22 22 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 23 23 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 25 25 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 26 26 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 27 27 H 1.09004 * 109.46862 * 299.99897 * 4 3 2 28 28 H 1.09004 * 109.46998 * 59.99419 * 4 3 2 29 29 H 0.97000 * 120.00540 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46807 * 53.95411 * 13 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 13 2 1 32 32 H 1.07999 * 125.98655 * 0.05543 * 15 14 13 33 33 H 1.09012 * 110.39668 * 224.15249 * 19 18 17 34 34 H 1.08999 * 110.01142 * 102.23142 * 19 18 17 35 35 H 1.08994 * 110.97096 * 267.37659 * 20 19 18 36 36 H 1.09005 * 110.99772 * 143.62951 * 20 19 18 37 37 H 1.08991 * 110.48142 * 315.25112 * 21 17 16 38 38 H 1.09000 * 110.47363 * 77.74068 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1720 3.4642 1.3185 6 1 2.7199 3.8323 0.4637 7 6 1.9662 4.2817 2.4095 8 7 1.2985 3.8336 3.4502 9 14 2.6356 6.0256 2.4095 10 1 1.6186 6.9462 1.8408 11 1 2.9503 6.4350 3.8019 12 1 3.8700 6.0819 1.5861 13 6 1.9954 -0.7660 -1.1377 14 6 1.6370 -2.2204 -0.9729 15 6 0.5718 -2.8488 -1.5031 16 7 0.6142 -4.1323 -1.1200 17 6 1.6682 -4.3246 -0.3677 18 7 2.3373 -3.1593 -0.2586 19 6 3.5367 -3.3118 0.5777 20 6 3.3381 -4.6331 1.3512 21 6 2.3859 -5.4079 0.4125 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.0797 1.3445 -0.1083 26 1 1.5610 1.9274 -0.8309 27 1 0.5472 2.0845 1.4265 28 1 2.0659 1.5015 2.1491 29 1 1.1540 4.4085 4.2180 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 -0.1847 -2.3980 -2.1283 33 1 3.6234 -2.4771 1.2734 34 1 4.4247 -3.3730 -0.0513 35 1 2.8699 -4.4522 2.3188 36 1 4.2838 -5.1619 1.4705 37 1 1.6740 -5.9957 0.9920 38 1 2.9516 -6.0516 -0.2610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719375795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:09 Heat of formation + Delta-G solvation = 46.465997 kcal Electronic energy + Delta-G solvation = -18022.136751 eV Core-core repulsion = 15285.734410 eV Total energy + Delta-G solvation = -2736.402341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.39616 -38.76920 -37.16842 -35.24542 -33.18221 -31.79542 -29.95049 -28.69365 -27.86188 -26.56823 -24.18415 -23.02621 -21.71743 -21.37845 -20.49699 -18.61422 -17.67511 -16.91225 -16.51837 -16.35831 -16.21132 -15.55098 -15.02337 -14.80434 -14.64587 -14.28294 -14.15719 -14.10436 -13.38856 -13.32880 -13.08227 -12.90036 -12.75150 -12.61550 -12.43417 -12.40955 -11.92512 -11.83232 -11.43924 -11.29708 -10.86636 -10.55694 -10.46501 -9.38029 -9.10126 -8.20963 -6.32728 1.01132 1.40216 1.41543 1.52651 1.89876 2.08640 2.39941 2.99555 3.12697 3.16705 3.52311 3.74822 3.92935 4.01708 4.13593 4.26679 4.37593 4.45020 4.52693 4.59608 4.61308 4.66479 4.67813 4.77854 4.90831 4.97933 5.01006 5.06451 5.15396 5.43382 5.47561 5.61956 5.75564 5.87288 6.03749 6.14557 6.18756 6.29502 6.84659 7.13748 7.36783 8.91255 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.004344 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.676606 B = 6444.207892 C = 6802.651642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.552 5.552 3 C 0.081 3.919 4 C 0.037 3.963 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.261 1.261 13 C 0.132 3.868 14 C 0.002 3.998 15 C -0.034 4.034 16 N -0.523 5.523 17 C 0.170 3.830 18 N -0.471 5.471 19 C 0.089 3.911 20 C -0.115 4.115 21 C -0.036 4.036 22 H 0.033 0.967 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.027 0.973 27 H -0.007 1.007 28 H -0.011 1.011 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.179 0.821 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 -16.832 -7.011 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.277 5.277 3 C -0.047 4.047 4 C 0.000 4.000 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.185 1.185 13 C 0.003 3.997 14 C -0.113 4.113 15 C -0.183 4.183 16 N -0.242 5.242 17 C -0.094 4.094 18 N -0.154 5.154 19 C -0.031 4.031 20 C -0.153 4.153 21 C -0.075 4.075 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.196 0.804 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.156 0.844 37 H 0.123 0.877 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.548 -17.422 -6.582 19.432 hybrid contribution 0.062 2.236 -0.259 2.252 sum 5.609 -15.186 -6.840 17.575 Atomic orbital electron populations 1.22266 0.87348 1.01346 1.00384 1.61990 1.08544 1.14518 1.42614 1.22008 0.98836 0.86059 0.97747 1.18905 0.94995 0.93731 0.92385 1.21622 1.35380 0.98833 1.02407 0.91956 1.25966 0.95378 1.03271 0.95005 1.70115 1.42042 1.38286 1.06852 0.85425 0.79058 0.78929 0.77492 1.19836 1.20780 1.18522 1.20395 1.00472 0.86142 0.92665 1.20862 0.96302 0.92116 1.02069 1.22262 0.99586 0.89951 1.06458 1.69799 1.20012 1.18404 1.16027 1.25207 0.92098 0.90533 1.01525 1.46525 1.21875 1.09668 1.37370 1.22716 0.85319 1.01219 0.93829 1.22790 1.02271 0.92353 0.97840 1.20873 0.97045 0.93187 0.96390 0.94846 0.91295 0.93261 0.91497 0.95491 0.98888 0.99237 0.92775 0.91466 0.89930 0.80411 0.89940 0.87515 0.89709 0.84414 0.87715 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.25 9.12 127.69 1.17 2.42 16 2 N -0.55 -20.48 4.75 -927.06 -4.41 -24.89 16 3 C 0.08 3.39 4.90 86.30 0.42 3.81 16 4 C 0.04 2.00 4.90 29.84 0.15 2.15 16 5 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 6 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 9 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.13 3.94 5.52 85.55 0.47 4.41 16 14 C 0.00 0.05 5.98 40.88 0.24 0.30 16 15 C -0.03 -1.05 10.67 83.52 0.89 -0.16 16 16 N -0.52 -16.94 11.26 -187.32 -2.11 -19.05 16 17 C 0.17 4.54 8.58 138.36 1.19 5.73 16 18 N -0.47 -12.68 3.61 -494.75 -1.79 -14.46 16 19 C 0.09 1.65 7.78 86.75 0.67 2.33 16 20 C -0.11 -1.32 7.17 31.59 0.23 -1.10 16 21 C -0.04 -0.54 6.86 30.65 0.21 -0.33 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 2.35 6.34 -2.39 -0.02 2.34 16 24 H 0.05 2.03 6.47 -2.39 -0.02 2.02 16 25 H 0.07 2.69 7.93 -2.38 -0.02 2.67 16 26 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 27 H -0.01 -0.42 6.55 -2.38 -0.02 -0.43 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 31 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 32 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.14 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -72.94 310.53 1.37 -71.56 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.03 Total: 8.33 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 6.34 Total: -10.61 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -8.02 Total: -115.37 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.94 1.37 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719375795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.030 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds