Wall clock time and date at job start Mon Mar 30 2020 21:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 S 1.65598 * 119.99779 * 179.97438 * 9 7 2 11 11 O 1.52195 * 109.47238 * 60.00089 * 10 9 7 12 12 O 1.42096 * 109.47242 * 299.99893 * 10 9 7 13 13 C 1.55354 * 109.47105 * 179.97438 * 10 9 7 14 14 C 1.38004 * 126.87124 * 179.70625 * 13 10 9 15 15 N 1.28845 * 120.35892 * 179.80335 * 14 13 10 16 16 C 1.46803 * 115.90095 * 0.50584 * 15 14 13 17 17 H 1.08998 * 110.60301 * 118.26320 * 16 15 14 18 18 N 1.46909 * 110.73249 * 241.15598 * 16 15 14 19 19 S 1.77472 * 126.86571 * 0.02562 * 13 10 9 20 20 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 22 22 H 0.96701 * 114.00367 * 59.99851 * 11 10 9 23 23 H 1.08003 * 119.82379 * 0.04303 * 14 13 10 24 24 H 1.00905 * 110.99645 * 294.23549 * 18 16 15 25 25 H 1.00897 * 110.99767 * 58.18508 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 16 2.1537 -3.8221 0.0005 11 8 3.0287 -3.9027 1.2432 12 8 2.9706 -3.8974 -1.1597 13 6 1.1442 -5.0030 0.0012 14 6 1.4453 -6.3498 -0.0043 15 7 0.5025 -7.2279 0.0008 16 6 -0.8668 -6.6985 0.0009 17 1 -1.4002 -7.0145 -0.8956 18 7 -1.5889 -7.1243 1.2073 19 16 -0.6269 -4.8897 0.0012 20 1 -0.4850 0.8401 0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.5366 -3.8574 2.0744 23 1 2.4770 -6.6695 -0.0090 24 1 -1.7249 -8.1242 1.2133 25 1 -1.1104 -6.8195 2.0416 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725606156.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:18 Heat of formation + Delta-G solvation = -65.146327 kcal Electronic energy + Delta-G solvation = -14592.039936 eV Core-core repulsion = 11858.350687 eV Total energy + Delta-G solvation = -2733.689249 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.018 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.72920 -38.59234 -37.16952 -36.92692 -34.23723 -33.29451 -29.95002 -26.84202 -25.52332 -21.86741 -21.78781 -20.06100 -19.32198 -19.22118 -17.38695 -17.17337 -16.78561 -16.68262 -15.81968 -15.64079 -15.28206 -14.60827 -14.27603 -13.66710 -13.56219 -13.26360 -13.16623 -12.89497 -12.50209 -12.37029 -12.12969 -11.99013 -11.77497 -10.79471 -10.53546 -10.15700 -9.74838 -8.75414 -7.88477 -6.09758 -0.81536 0.82958 1.24530 1.47329 1.55641 1.57874 1.69409 2.14208 2.38901 2.65770 2.86865 3.49485 3.62826 3.68904 4.28546 4.50230 4.81425 5.19424 5.34147 5.58386 5.83951 6.30498 6.37575 6.50104 6.82557 6.89046 8.36224 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.007633 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.270213 B = 3667.338530 C = 4166.605901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C -0.001 4.001 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.254 1.254 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.133 0.867 9 N -0.913 5.913 10 S 2.651 3.349 11 O -0.902 6.902 12 O -0.979 6.979 13 C -1.173 5.173 14 C 0.286 3.714 15 N -0.650 5.650 16 C 0.284 3.716 17 H 0.099 0.901 18 N -0.811 5.811 19 S -0.164 6.164 20 H 0.297 0.703 21 H 0.415 0.585 22 H 0.465 0.535 23 H 0.147 0.853 24 H 0.349 0.651 25 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 0.667 5.464 6.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.214 4.214 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.178 1.178 6 H -0.201 1.201 7 C -0.402 4.402 8 H 0.151 0.849 9 N -0.664 5.664 10 S 2.778 3.222 11 O -0.757 6.757 12 O -0.970 6.970 13 C -1.394 5.394 14 C 0.088 3.912 15 N -0.372 5.372 16 C -0.028 4.028 17 H 0.117 0.883 18 N -0.345 5.345 19 S 0.057 5.943 20 H 0.107 0.893 21 H 0.252 0.748 22 H 0.334 0.666 23 H 0.164 0.836 24 H 0.165 0.835 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.191 0.520 4.695 5.207 hybrid contribution 0.173 -0.750 0.491 0.913 sum 2.364 -0.230 5.186 5.704 Atomic orbital electron populations 1.69788 1.07990 1.31729 1.39247 1.26589 0.96524 1.03458 0.94855 0.84784 0.78474 0.74886 0.79703 1.18149 1.17758 1.20059 1.20569 0.94290 0.83049 1.42339 0.84940 1.52594 1.18270 1.18635 1.76874 1.09105 0.68098 0.69608 0.75396 1.85700 1.61838 1.93427 1.34714 1.93271 1.68883 1.86923 1.47898 1.31681 1.14463 1.18270 1.74995 1.21039 0.99095 0.86377 0.84735 1.72924 0.99276 1.33040 1.31927 1.24801 0.92050 0.89664 0.96281 0.88311 1.59703 1.51837 1.19812 1.03128 1.85386 0.97602 1.13822 1.97447 0.89269 0.74816 0.66561 0.83571 0.83464 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -36.74 13.06 21.65 0.28 -36.46 15 2 C 0.00 -0.04 5.50 84.86 0.47 0.43 15 3 Si 1.00 30.70 29.55 68.60 2.03 32.73 15 4 H -0.26 -7.43 7.11 99.48 0.71 -6.72 15 5 H -0.25 -7.55 7.11 99.48 0.71 -6.85 15 6 H -0.28 -8.55 7.11 99.48 0.71 -7.84 15 7 C -0.25 -10.00 9.94 84.03 0.84 -9.17 15 8 H 0.13 4.84 7.82 -2.91 -0.02 4.82 15 9 N -0.91 -36.58 5.75 -54.27 -0.31 -36.89 15 10 S 2.65 100.12 4.61 -55.75 -0.26 99.86 15 11 O -0.90 -26.61 13.47 -126.85 -1.71 -28.32 15 12 O -0.98 -46.07 18.04 -126.85 -2.29 -48.36 15 13 C -1.17 -47.37 5.87 67.76 0.40 -46.97 15 14 C 0.29 11.69 10.91 85.07 0.93 12.62 15 15 N -0.65 -26.88 11.12 -348.19 -3.87 -30.75 15 16 C 0.28 11.22 5.30 170.69 0.90 12.12 15 17 H 0.10 3.96 8.14 -2.39 -0.02 3.94 15 18 N -0.81 -26.75 9.58 -185.47 -1.78 -28.53 15 19 S -0.16 -6.82 21.86 -55.75 -1.22 -8.03 15 20 H 0.30 11.83 8.31 -92.71 -0.77 11.05 15 21 H 0.42 17.59 6.77 -96.75 -0.66 16.94 15 22 H 0.47 8.67 9.03 -87.93 -0.79 7.88 15 23 H 0.15 5.35 8.06 -2.91 -0.02 5.33 15 24 H 0.35 10.04 9.08 -89.69 -0.81 9.22 15 25 H 0.34 11.06 9.04 -89.70 -0.81 10.25 15 Total: -1.00 -60.33 252.15 -7.38 -67.72 By element: Atomic # 1 Polarization: 49.81 SS G_CDS: -1.79 Total: 48.02 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 3.53 Total: -30.97 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -5.68 Total: -132.63 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -4.00 Total: -76.68 kcal Atomic # 14 Polarization: 30.70 SS G_CDS: 2.03 Total: 32.73 kcal Atomic # 16 Polarization: 93.30 SS G_CDS: -1.48 Total: 91.82 kcal Total: -60.33 -7.38 -67.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725606156.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.570 kcal (2) G-P(sol) polarization free energy of solvation -60.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds