Wall clock time and date at job start Mon Mar 30 2020 21:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.52201 * 109.47125 * 300.00317 * 10 9 7 12 12 O 1.42103 * 109.46992 * 60.00165 * 10 9 7 13 13 C 1.55356 * 109.47178 * 179.97438 * 10 9 7 14 14 C 1.38008 * 126.86785 * 179.97438 * 13 10 9 15 15 N 1.28849 * 120.35778 * 179.97438 * 14 13 10 16 16 C 1.46804 * 115.90001 * 0.02562 * 15 14 13 17 17 H 1.08997 * 110.60319 * 118.52403 * 16 15 14 18 18 N 1.46901 * 110.59960 * 241.47736 * 16 15 14 19 19 S 1.77463 * 126.86813 * 359.68861 * 13 10 9 20 20 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 22 22 H 0.96703 * 114.00079 * 299.99576 * 11 10 9 23 23 H 1.07998 * 119.82327 * 359.94713 * 14 13 10 24 24 H 1.00904 * 110.99879 * 298.54436 * 18 16 15 25 25 H 1.00903 * 111.00238 * 62.49987 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 3.0284 -3.8963 -1.2575 12 8 2.9704 -3.9036 1.1455 13 6 1.1438 -5.0030 -0.0199 14 6 1.4449 -6.3498 -0.0273 15 7 0.5019 -7.2278 -0.0308 16 6 -0.8673 -6.6984 -0.0269 17 1 -1.4016 -7.0101 -0.9244 18 7 -1.5851 -7.1303 1.1798 19 16 -0.6272 -4.8897 -0.0108 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 -0.0068 22 1 2.5363 -3.8466 -2.0884 23 1 2.4765 -6.6695 -0.0307 24 1 -1.6585 -8.1360 1.2163 25 1 -1.1431 -6.7696 2.0121 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725606157.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:22 Heat of formation + Delta-G solvation = -37.146524 kcal Electronic energy + Delta-G solvation = -14589.823507 eV Core-core repulsion = 11857.348420 eV Total energy + Delta-G solvation = -2732.475086 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.018 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.15233 -36.98529 -35.44068 -35.33906 -32.65791 -31.77857 -28.27408 -25.31711 -23.90544 -20.22623 -20.21860 -18.50878 -17.76411 -17.59708 -15.83633 -15.57327 -15.27071 -15.06136 -14.28302 -14.15092 -13.70996 -12.99269 -12.74708 -12.19420 -12.03180 -11.84511 -11.55250 -11.04276 -10.91478 -10.80416 -10.73836 -10.58850 -10.16660 -9.17567 -9.02739 -8.44453 -8.17353 -7.31641 -6.19172 -4.53009 0.79271 2.44516 2.81663 2.87237 2.91847 2.94093 3.13876 3.53650 3.81692 4.22286 4.38623 5.06885 5.24524 5.30043 5.89498 6.15170 6.30797 6.62710 6.77631 7.02722 7.35853 7.69277 7.87598 7.97573 8.42596 8.51365 9.77027 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.037652 B = 0.007640 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.471753 B = 3663.935818 C = 4170.136033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.030 3.970 3 Si 0.942 3.058 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.206 4.206 8 H 0.122 0.878 9 N -0.901 5.901 10 S 2.585 3.415 11 O -0.915 6.915 12 O -0.938 6.938 13 C -1.164 5.164 14 C 0.300 3.700 15 N -0.644 5.644 16 C 0.287 3.713 17 H 0.103 0.897 18 N -0.822 5.822 19 S -0.145 6.145 20 H 0.295 0.705 21 H 0.419 0.581 22 H 0.441 0.559 23 H 0.129 0.871 24 H 0.336 0.664 25 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 1.142 -3.697 4.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.365 4.365 8 H 0.140 0.860 9 N -0.650 5.650 10 S 2.714 3.286 11 O -0.765 6.765 12 O -0.928 6.928 13 C -1.386 5.386 14 C 0.101 3.899 15 N -0.366 5.366 16 C -0.025 4.025 17 H 0.120 0.880 18 N -0.356 5.356 19 S 0.076 5.924 20 H 0.105 0.895 21 H 0.256 0.744 22 H 0.305 0.695 23 H 0.146 0.854 24 H 0.150 0.850 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.453 0.923 -3.482 3.884 hybrid contribution 0.429 -0.523 -0.232 0.715 sum 1.882 0.400 -3.713 4.182 Atomic orbital electron populations 1.69731 1.06723 1.30951 1.36573 1.25866 0.96069 1.01071 0.95806 0.85593 0.79961 0.78887 0.79075 1.18018 1.19444 1.19287 1.20340 0.93738 0.82906 1.39533 0.85998 1.53036 1.18677 1.18857 1.74399 1.12583 0.69195 0.70618 0.76225 1.85784 1.63041 1.93695 1.34029 1.93301 1.67588 1.86360 1.45562 1.31579 1.14549 1.17929 1.74560 1.20700 0.98142 0.86275 0.84735 1.72930 0.98815 1.32763 1.32055 1.24785 0.92106 0.90255 0.95324 0.87974 1.59819 1.55482 1.15844 1.04425 1.85246 0.97220 1.12613 1.97308 0.89463 0.74361 0.69474 0.85356 0.85003 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -17.03 13.06 55.49 0.72 -16.30 15 2 C 0.03 0.59 5.50 -17.43 -0.10 0.50 15 3 Si 0.94 15.19 29.55 -169.99 -5.02 10.17 15 4 H -0.26 -4.02 7.11 56.52 0.40 -3.62 15 5 H -0.27 -4.28 7.11 56.52 0.40 -3.88 15 6 H -0.27 -4.41 7.11 56.52 0.40 -4.01 15 7 C -0.21 -4.20 9.94 -15.06 -0.15 -4.35 15 8 H 0.12 2.28 7.82 -52.49 -0.41 1.87 15 9 N -0.90 -18.21 5.75 31.50 0.18 -18.03 15 10 S 2.58 50.81 4.61 -107.14 -0.49 50.31 15 11 O -0.92 -14.84 13.48 -58.38 -0.79 -15.63 15 12 O -0.94 -22.62 18.04 -58.38 -1.05 -23.67 15 13 C -1.16 -24.46 5.87 30.65 0.18 -24.28 15 14 C 0.30 6.44 10.91 -18.89 -0.21 6.23 15 15 N -0.64 -13.96 11.12 -61.41 -0.68 -14.64 15 16 C 0.29 5.90 5.32 -62.98 -0.34 5.57 15 17 H 0.10 2.04 8.14 -51.93 -0.42 1.62 15 18 N -0.82 -15.18 9.59 -9.98 -0.10 -15.28 15 19 S -0.15 -3.09 21.80 -107.14 -2.34 -5.43 15 20 H 0.29 5.70 8.31 -40.82 -0.34 5.36 15 21 H 0.42 8.83 6.77 -34.47 -0.23 8.59 15 22 H 0.44 4.85 9.03 67.38 0.61 5.45 15 23 H 0.13 2.51 8.06 -52.49 -0.42 2.09 15 24 H 0.34 5.50 9.08 -39.29 -0.36 5.14 15 25 H 0.34 6.52 8.98 -39.29 -0.35 6.17 15 LS Contribution 252.06 15.07 3.80 3.80 Total: -1.00 -29.14 252.06 -7.10 -36.24 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.73 Total: 24.78 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.61 Total: -16.33 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.13 Total: -64.25 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.84 Total: -39.30 kcal Atomic # 14 Polarization: 15.19 SS G_CDS: -5.02 Total: 10.17 kcal Atomic # 16 Polarization: 47.71 SS G_CDS: -2.83 Total: 44.88 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.14 -7.10 -36.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725606157.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.907 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds