Wall clock time and date at job start Mon Mar 30 2020 21:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47109 * 270.00047 * 3 2 1 5 5 H 1.48503 * 109.46922 * 29.99599 * 3 2 1 6 6 H 1.48490 * 109.47304 * 149.99750 * 3 2 1 7 7 C 1.38813 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00031 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 S 1.65595 * 120.00213 * 179.97438 * 9 7 2 11 11 O 1.52206 * 109.46918 * 300.00055 * 10 9 7 12 12 O 1.42105 * 109.47272 * 59.99369 * 10 9 7 13 13 C 1.55354 * 109.47530 * 179.97438 * 10 9 7 14 14 C 1.38005 * 126.87201 * 179.70567 * 13 10 9 15 15 N 1.28846 * 120.35902 * 179.80318 * 14 13 10 16 16 C 1.46802 * 115.90007 * 0.50083 * 15 14 13 17 17 H 1.08989 * 110.60490 * 241.21850 * 16 15 14 18 18 N 1.46902 * 110.73222 * 118.32502 * 16 15 14 19 19 S 1.77466 * 126.86527 * 0.02562 * 13 10 9 20 20 H 0.96997 * 120.00409 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 22 22 H 0.96705 * 113.99648 * 299.99815 * 11 10 9 23 23 H 1.08004 * 119.81647 * 0.03860 * 14 13 10 24 24 H 1.00905 * 111.00079 * 65.76468 * 18 16 15 25 25 H 1.00896 * 111.00174 * 189.71876 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 16 2.1537 -3.8222 0.0005 11 8 3.0287 -3.9027 -1.2422 12 8 2.9708 -3.8974 1.1607 13 6 1.1442 -5.0031 0.0012 14 6 1.4454 -6.3498 -0.0043 15 7 0.5025 -7.2280 0.0008 16 6 -0.8668 -6.6986 0.0010 17 1 -1.4001 -7.0149 0.8973 18 7 -1.5889 -7.1240 -1.2055 19 16 -0.6268 -4.8898 0.0012 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3881 0.0005 22 1 2.5365 -3.8574 -2.0734 23 1 2.4770 -6.6694 -0.0091 24 1 -1.7249 -8.1238 -1.2118 25 1 -2.4695 -6.6388 -1.2898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725606159.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:29 Heat of formation + Delta-G solvation = -32.550210 kcal Electronic energy + Delta-G solvation = -14572.647913 eV Core-core repulsion = 11840.372137 eV Total energy + Delta-G solvation = -2732.275775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.018 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.11945 -36.83881 -35.39912 -35.32084 -32.86102 -31.73972 -28.31577 -25.28675 -23.88653 -20.19499 -20.15687 -18.43122 -17.76415 -17.44314 -15.85901 -15.61225 -15.24131 -14.91200 -14.52169 -14.06646 -13.85085 -12.91995 -12.69580 -12.17361 -12.09210 -11.81552 -11.51876 -11.21885 -10.97008 -10.78320 -10.68847 -10.53878 -10.23128 -9.00051 -8.58181 -8.48789 -8.23897 -7.27269 -6.14751 -4.50085 0.82366 2.49019 2.82369 2.86672 2.89944 2.94618 3.20492 3.57146 3.84704 4.25315 4.41651 4.84082 5.31102 5.47372 5.67527 6.19597 6.34193 6.66487 6.81474 7.13751 7.29962 7.64319 7.91834 8.01306 8.46281 8.63289 9.81760 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.007636 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.183921 B = 3665.944054 C = 4177.422230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.211 4.211 8 H 0.121 0.879 9 N -0.903 5.903 10 S 2.592 3.408 11 O -0.915 6.915 12 O -0.937 6.937 13 C -1.155 5.155 14 C 0.299 3.701 15 N -0.603 5.603 16 C 0.296 3.704 17 H 0.059 0.941 18 N -0.831 5.831 19 S -0.152 6.152 20 H 0.294 0.706 21 H 0.419 0.581 22 H 0.442 0.558 23 H 0.133 0.867 24 H 0.337 0.663 25 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 1.040 -3.604 3.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.187 4.187 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.139 0.861 9 N -0.652 5.652 10 S 2.721 3.279 11 O -0.765 6.765 12 O -0.927 6.927 13 C -1.377 5.377 14 C 0.100 3.900 15 N -0.322 5.322 16 C -0.016 4.016 17 H 0.076 0.924 18 N -0.366 5.366 19 S 0.070 5.930 20 H 0.105 0.895 21 H 0.256 0.744 22 H 0.306 0.694 23 H 0.150 0.850 24 H 0.152 0.848 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.974 0.730 -3.462 3.670 hybrid contribution -1.233 -0.356 0.100 1.288 sum -0.260 0.373 -3.362 3.392 Atomic orbital electron populations 1.69719 1.06696 1.30906 1.37168 1.25828 0.96052 1.00978 0.95818 0.85652 0.79796 0.78644 0.79470 1.19119 1.19625 1.18091 1.20247 0.93653 0.82852 1.40148 0.86098 1.52953 1.18605 1.18624 1.75046 1.11947 0.69199 0.70550 0.76223 1.85782 1.62961 1.93702 1.34047 1.93309 1.67549 1.86380 1.45420 1.31424 1.13580 1.17967 1.74776 1.20708 0.98099 0.86062 0.85097 1.72481 0.96891 1.32005 1.30846 1.24548 0.94830 0.90110 0.92100 0.92386 1.58879 1.25962 1.10589 1.41214 1.84956 0.98757 1.12228 1.97069 0.89541 0.74412 0.69350 0.84995 0.84809 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.32 13.06 55.49 0.72 -16.59 15 2 C 0.03 0.62 5.50 -17.43 -0.10 0.52 15 3 Si 0.94 15.41 29.55 -169.99 -5.02 10.39 15 4 H -0.27 -4.25 7.11 56.52 0.40 -3.85 15 5 H -0.27 -4.48 7.11 56.52 0.40 -4.08 15 6 H -0.26 -4.17 7.11 56.52 0.40 -3.77 15 7 C -0.21 -4.36 9.94 -15.06 -0.15 -4.51 15 8 H 0.12 2.29 7.82 -52.49 -0.41 1.88 15 9 N -0.90 -18.54 5.75 31.49 0.18 -18.36 15 10 S 2.59 51.96 4.61 -107.14 -0.49 51.47 15 11 O -0.91 -15.25 13.48 -58.38 -0.79 -16.04 15 12 O -0.94 -22.78 18.04 -58.38 -1.05 -23.83 15 13 C -1.16 -24.95 5.87 30.65 0.18 -24.77 15 14 C 0.30 6.65 10.91 -18.89 -0.21 6.44 15 15 N -0.60 -13.63 11.12 -61.41 -0.68 -14.31 15 16 C 0.30 6.15 5.30 -62.99 -0.33 5.81 15 17 H 0.06 1.19 8.14 -51.94 -0.42 0.76 15 18 N -0.83 -14.59 9.58 -9.98 -0.10 -14.69 15 19 S -0.15 -3.25 21.85 -107.14 -2.34 -5.59 15 20 H 0.29 5.77 8.31 -40.82 -0.34 5.43 15 21 H 0.42 8.92 6.77 -34.47 -0.23 8.69 15 22 H 0.44 5.16 9.03 67.38 0.61 5.77 15 23 H 0.13 2.65 8.06 -52.48 -0.42 2.22 15 24 H 0.34 5.26 9.08 -39.29 -0.36 4.91 15 25 H 0.34 5.21 9.04 -39.29 -0.36 4.86 15 LS Contribution 252.15 15.07 3.80 3.80 Total: -1.00 -30.32 252.15 -7.11 -37.42 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.73 Total: 22.82 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.61 Total: -16.50 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.13 Total: -63.95 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.84 Total: -39.86 kcal Atomic # 14 Polarization: 15.41 SS G_CDS: -5.02 Total: 10.39 kcal Atomic # 16 Polarization: 48.71 SS G_CDS: -2.84 Total: 45.88 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.32 -7.11 -37.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725606159.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.872 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds