Wall clock time and date at job start Mon Mar 30 2020 21:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47109 * 270.00047 * 3 2 1 5 5 H 1.48503 * 109.46922 * 29.99599 * 3 2 1 6 6 H 1.48490 * 109.47304 * 149.99750 * 3 2 1 7 7 C 1.38813 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00031 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 S 1.65595 * 120.00213 * 179.97438 * 9 7 2 11 11 O 1.52206 * 109.46918 * 300.00055 * 10 9 7 12 12 O 1.42105 * 109.47272 * 59.99369 * 10 9 7 13 13 C 1.55354 * 109.47530 * 179.97438 * 10 9 7 14 14 C 1.38005 * 126.87201 * 179.70567 * 13 10 9 15 15 N 1.28846 * 120.35902 * 179.80318 * 14 13 10 16 16 C 1.46802 * 115.90007 * 0.50083 * 15 14 13 17 17 H 1.08989 * 110.60490 * 241.21850 * 16 15 14 18 18 N 1.46902 * 110.73222 * 118.32502 * 16 15 14 19 19 S 1.77466 * 126.86527 * 0.02562 * 13 10 9 20 20 H 0.96997 * 120.00409 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 22 22 H 0.96705 * 113.99648 * 299.99815 * 11 10 9 23 23 H 1.08004 * 119.81647 * 0.03860 * 14 13 10 24 24 H 1.00905 * 111.00079 * 65.76468 * 18 16 15 25 25 H 1.00896 * 111.00174 * 189.71876 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 16 2.1537 -3.8222 0.0005 11 8 3.0287 -3.9027 -1.2422 12 8 2.9708 -3.8974 1.1607 13 6 1.1442 -5.0031 0.0012 14 6 1.4454 -6.3498 -0.0043 15 7 0.5025 -7.2280 0.0008 16 6 -0.8668 -6.6986 0.0010 17 1 -1.4001 -7.0149 0.8973 18 7 -1.5889 -7.1240 -1.2055 19 16 -0.6268 -4.8898 0.0012 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3881 0.0005 22 1 2.5365 -3.8574 -2.0734 23 1 2.4770 -6.6694 -0.0091 24 1 -1.7249 -8.1238 -1.2118 25 1 -2.4695 -6.6388 -1.2898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725606159.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:28 Heat of formation + Delta-G solvation = -61.619829 kcal Electronic energy + Delta-G solvation = -14573.908466 eV Core-core repulsion = 11840.372137 eV Total energy + Delta-G solvation = -2733.536329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.018 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.67871 -38.49756 -37.15397 -36.92084 -34.39428 -33.28985 -29.99874 -26.84262 -25.50697 -21.83213 -21.76642 -20.00441 -19.35006 -19.07620 -17.42502 -17.24281 -16.74359 -16.47267 -16.02932 -15.59920 -15.43558 -14.44755 -14.32470 -13.76371 -13.65649 -13.26049 -13.15694 -12.89219 -12.55677 -12.40883 -12.12795 -12.00746 -11.86115 -10.53052 -10.28110 -10.09044 -9.82861 -8.75029 -7.84966 -6.09483 -0.80459 0.83960 1.20749 1.49713 1.56121 1.58003 1.69558 2.14369 2.38983 2.66509 2.87237 3.32766 3.64786 3.91480 4.06408 4.52364 4.82202 5.20037 5.41778 5.58989 5.88349 6.34050 6.38141 6.50557 6.89194 6.95806 8.36814 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.007636 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.183921 B = 3665.944054 C = 4177.422230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C -0.001 4.001 3 Si 1.002 2.998 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.249 4.249 8 H 0.133 0.867 9 N -0.913 5.913 10 S 2.652 3.348 11 O -0.902 6.902 12 O -0.978 6.978 13 C -1.168 5.168 14 C 0.284 3.716 15 N -0.617 5.617 16 C 0.292 3.708 17 H 0.062 0.938 18 N -0.828 5.828 19 S -0.166 6.166 20 H 0.297 0.703 21 H 0.415 0.585 22 H 0.465 0.535 23 H 0.150 0.850 24 H 0.350 0.650 25 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 0.954 -4.362 4.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.214 4.214 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.403 4.403 8 H 0.150 0.850 9 N -0.664 5.664 10 S 2.779 3.221 11 O -0.757 6.757 12 O -0.968 6.968 13 C -1.390 5.390 14 C 0.085 3.915 15 N -0.337 5.337 16 C -0.020 4.020 17 H 0.079 0.921 18 N -0.366 5.366 19 S 0.056 5.944 20 H 0.107 0.893 21 H 0.251 0.749 22 H 0.334 0.666 23 H 0.167 0.833 24 H 0.167 0.833 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.511 0.654 -4.252 4.560 hybrid contribution -1.413 -0.553 0.277 1.543 sum 0.098 0.101 -3.975 3.978 Atomic orbital electron populations 1.69780 1.07976 1.31696 1.39405 1.26584 0.96538 1.03431 0.94853 0.84782 0.78487 0.74883 0.79684 1.18200 1.20012 1.17759 1.20568 0.94297 0.83034 1.42405 0.84964 1.52577 1.18226 1.18596 1.77014 1.09006 0.68118 0.69615 0.75386 1.85694 1.61826 1.93435 1.34730 1.93272 1.68818 1.86911 1.47791 1.31581 1.13855 1.18261 1.75268 1.21054 0.99055 0.86249 0.85157 1.72449 0.97754 1.32630 1.30865 1.24591 0.94572 0.89395 0.93421 0.92137 1.58746 1.26737 1.11741 1.39419 1.85008 0.98842 1.13283 1.97308 0.89291 0.74852 0.66559 0.83279 0.83348 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -36.81 13.06 21.65 0.28 -36.53 15 2 C 0.00 -0.04 5.50 84.86 0.47 0.43 15 3 Si 1.00 30.88 29.55 68.60 2.03 32.90 15 4 H -0.26 -7.51 7.11 99.48 0.71 -6.80 15 5 H -0.28 -8.55 7.11 99.48 0.71 -7.84 15 6 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15 7 C -0.25 -10.13 9.94 84.03 0.84 -9.30 15 8 H 0.13 4.89 7.82 -2.91 -0.02 4.87 15 9 N -0.91 -37.06 5.75 -54.27 -0.31 -37.37 15 10 S 2.65 102.62 4.61 -55.75 -0.26 102.37 15 11 O -0.90 -27.79 13.48 -126.85 -1.71 -29.50 15 12 O -0.98 -46.49 18.04 -126.85 -2.29 -48.78 15 13 C -1.17 -48.79 5.87 67.76 0.40 -48.39 15 14 C 0.28 12.12 10.91 85.08 0.93 13.05 15 15 N -0.62 -26.89 11.12 -348.21 -3.87 -30.76 15 16 C 0.29 11.68 5.30 170.69 0.90 12.58 15 17 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 18 N -0.83 -27.41 9.58 -185.49 -1.78 -29.18 15 19 S -0.17 -6.93 21.85 -55.75 -1.22 -8.15 15 20 H 0.30 11.81 8.31 -92.71 -0.77 11.04 15 21 H 0.41 17.70 6.77 -96.74 -0.66 17.04 15 22 H 0.47 9.49 9.03 -87.92 -0.79 8.70 15 23 H 0.15 5.68 8.06 -2.91 -0.02 5.66 15 24 H 0.35 10.15 9.08 -89.69 -0.81 9.34 15 25 H 0.36 10.12 9.04 -89.70 -0.81 9.31 15 Total: -1.00 -62.46 252.15 -7.38 -69.84 By element: Atomic # 1 Polarization: 48.57 SS G_CDS: -1.79 Total: 46.78 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 3.53 Total: -31.62 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -5.68 Total: -133.84 kcal Atomic # 8 Polarization: -74.28 SS G_CDS: -4.00 Total: -78.28 kcal Atomic # 14 Polarization: 30.88 SS G_CDS: 2.03 Total: 32.90 kcal Atomic # 16 Polarization: 95.69 SS G_CDS: -1.48 Total: 94.22 kcal Total: -62.46 -7.38 -69.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725606159.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.223 kcal (2) G-P(sol) polarization free energy of solvation -62.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds