Wall clock time and date at job start Mon Mar 30 2020 21:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00324 * 2 1 4 4 H 1.48500 * 109.47131 * 264.80987 * 3 2 1 5 5 H 1.48501 * 109.47300 * 24.80677 * 3 2 1 6 6 H 1.48503 * 109.47342 * 144.80685 * 3 2 1 7 7 C 1.37878 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 4.91182 * 7 2 1 9 9 C 1.50699 * 119.99715 * 184.90691 * 7 2 1 10 10 H 1.09002 * 109.47418 * 334.98699 * 9 7 2 11 11 N 1.46904 * 109.47233 * 94.98146 * 9 7 2 12 12 C 1.46899 * 111.00401 * 204.99747 * 11 9 7 13 13 C 1.50701 * 109.47273 * 179.97438 * 12 11 9 14 14 C 1.34334 * 126.16214 * 95.00078 * 13 12 11 15 15 O 1.34747 * 107.11389 * 180.02562 * 14 13 12 16 16 C 1.33970 * 107.75615 * 359.97438 * 15 14 13 17 17 N 1.30254 * 108.76088 * 0.26833 * 16 15 14 18 18 C 1.52998 * 109.47486 * 214.98118 * 9 7 2 19 19 F 1.39906 * 109.47193 * 294.76607 * 18 9 7 20 20 F 1.39896 * 109.46950 * 54.76351 * 18 9 7 21 21 F 1.39901 * 109.47359 * 174.76469 * 18 9 7 22 22 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 23 23 H 1.00904 * 110.99818 * 81.04567 * 11 9 7 24 24 H 1.09004 * 109.46947 * 60.00487 * 12 11 9 25 25 H 1.08992 * 109.47598 * 300.00536 * 12 11 9 26 26 H 1.07994 * 126.44236 * 359.97438 * 14 13 12 27 27 H 1.08002 * 125.62447 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3962 2.6818 0.5874 6 1 3.4876 1.4742 0.8069 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0791 9 6 3.5073 -1.1965 0.1122 10 1 3.9004 -0.2483 -0.2544 11 7 3.8936 -1.3759 1.5181 12 6 5.2266 -0.8139 1.7737 13 6 5.5874 -1.0156 3.2229 14 6 6.3085 -2.0311 3.7263 15 8 6.3976 -1.8332 5.0562 16 6 5.7345 -0.7060 5.3467 17 7 5.2412 -0.2145 4.2460 18 6 4.0791 -2.3431 -0.7240 19 9 3.6703 -3.5657 -0.1804 20 9 3.6134 -2.2385 -2.0390 21 9 5.4763 -2.2737 -0.7172 22 1 -0.4849 0.8401 -0.0004 23 1 3.8547 -2.3489 1.7825 24 1 5.2212 0.2521 1.5460 25 1 5.9598 -1.3164 1.1430 26 1 6.7356 -2.8523 3.1699 27 1 5.6228 -0.2780 6.3320 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922646340.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:02 Heat of formation + Delta-G solvation = -127.314064 kcal Electronic energy + Delta-G solvation = -18734.897886 eV Core-core repulsion = 15079.718285 eV Total energy + Delta-G solvation = -3655.179602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.26616 -46.84175 -46.64902 -43.15527 -36.40162 -34.49615 -32.59211 -30.75597 -28.40073 -24.91674 -24.65504 -22.60211 -20.95986 -20.92848 -18.26923 -17.59218 -17.43452 -16.93543 -16.52246 -16.37663 -15.11024 -14.76201 -14.29883 -13.98865 -13.78866 -13.55776 -13.25094 -13.06068 -13.03893 -12.88943 -12.60071 -12.54573 -11.90218 -11.35222 -11.06315 -10.89011 -10.59375 -10.31733 -9.96205 -9.61066 -8.85554 -8.73565 -7.74836 -6.28220 -4.36849 1.59717 2.83966 2.98917 3.23258 3.32905 3.36771 3.69842 4.26912 4.29939 4.59652 4.80842 5.01048 5.09263 5.13825 5.24032 5.49566 5.67333 5.84304 5.98640 6.07488 6.19606 6.44154 7.10446 7.66485 7.87649 7.95868 8.21481 8.74344 9.29963 10.82205 Molecular weight = 250.07amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.009287 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.590825 B = 3014.093436 C = 3911.379496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.098 3.902 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.508 4.508 8 H 0.085 0.915 9 C 0.158 3.842 10 H 0.080 0.920 11 N -0.655 5.655 12 C 0.112 3.888 13 C 0.007 3.993 14 C -0.079 4.079 15 O -0.211 6.211 16 C 0.160 3.840 17 N -0.467 5.467 18 C 0.412 3.588 19 F -0.191 7.191 20 F -0.181 7.181 21 F -0.211 7.211 22 H 0.271 0.729 23 H 0.335 0.665 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.212 0.788 27 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -2.278 5.503 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.110 4.110 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.546 4.546 8 H 0.103 0.897 9 C 0.049 3.951 10 H 0.098 0.902 11 N -0.287 5.287 12 C -0.017 4.017 13 C -0.113 4.113 14 C -0.150 4.150 15 O -0.097 6.097 16 C -0.067 4.067 17 N -0.196 5.196 18 C 0.356 3.644 19 F -0.173 7.173 20 F -0.163 7.163 21 F -0.193 7.193 22 H 0.081 0.919 23 H 0.155 0.845 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.229 0.771 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 11.617 -1.095 5.709 12.990 hybrid contribution 1.362 -0.635 -0.412 1.558 sum 12.979 -1.730 5.297 14.125 Atomic orbital electron populations 1.69870 1.06446 1.27843 1.46712 1.24897 0.94689 0.99121 0.92267 0.86870 0.81265 0.83140 0.78636 1.19991 1.20820 1.17820 1.20425 0.86135 0.95883 1.52175 0.89736 1.20936 0.99295 0.90871 0.84046 0.90211 1.61589 1.23338 1.22817 1.20950 1.20606 0.91867 1.02237 0.86974 1.21771 0.99461 0.93176 0.96924 1.24788 1.06383 1.03131 0.80682 1.84450 1.59730 1.40118 1.25385 1.28111 0.93916 0.84087 1.00592 1.70390 1.20830 1.30063 0.98284 1.22978 0.74028 0.86531 0.80889 1.93064 1.90280 1.48233 1.85736 1.93110 1.88425 1.96194 1.38535 1.93046 1.33067 1.96652 1.96562 0.91922 0.84527 0.89454 0.93127 0.77136 0.73755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.96 55.43 0.77 -24.84 15 2 C 0.10 2.70 5.47 -17.82 -0.10 2.60 15 3 Si 0.87 20.79 26.99 -169.99 -4.59 16.21 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.25 -5.86 6.24 56.52 0.35 -5.51 15 7 C -0.51 -13.66 8.67 -34.44 -0.30 -13.96 15 8 H 0.08 2.49 8.01 -52.49 -0.42 2.07 15 9 C 0.16 3.56 1.76 -68.86 -0.12 3.44 15 10 H 0.08 1.79 4.95 -51.93 -0.26 1.53 15 11 N -0.66 -13.63 6.22 -109.22 -0.68 -14.31 15 12 C 0.11 2.00 5.96 -4.98 -0.03 1.97 15 13 C 0.01 0.11 6.62 -82.81 -0.55 -0.44 15 14 C -0.08 -1.05 12.08 29.35 0.35 -0.69 15 15 O -0.21 -2.71 10.78 5.37 0.06 -2.65 15 16 C 0.16 2.00 13.23 52.09 0.69 2.69 15 17 N -0.47 -7.93 11.29 -11.17 -0.13 -8.05 15 18 C 0.41 8.57 2.80 37.16 0.10 8.68 15 19 F -0.19 -3.95 16.18 2.25 0.04 -3.92 15 20 F -0.18 -3.97 16.89 2.25 0.04 -3.93 15 21 F -0.21 -3.89 15.24 2.25 0.03 -3.85 15 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.33 6.63 7.70 -39.29 -0.30 6.32 15 24 H 0.09 1.66 7.48 -51.93 -0.39 1.28 15 25 H 0.05 0.81 6.17 -51.93 -0.32 0.49 15 26 H 0.21 2.08 8.06 -52.49 -0.42 1.66 15 27 H 0.25 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 253.32 15.07 3.82 3.82 Total: -1.00 -30.98 253.32 -2.30 -33.28 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -1.72 Total: 3.97 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 0.05 Total: 4.28 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.03 Total: -47.20 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.65 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 0.11 Total: -11.70 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.59 Total: 16.21 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.98 -2.30 -33.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922646340.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.037 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds