Wall clock time and date at job start Mon Mar 30 2020 21:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47480 * 270.00111 * 3 2 1 5 5 H 1.48500 * 109.47050 * 30.00358 * 3 2 1 6 6 H 1.48500 * 109.47474 * 150.00250 * 3 2 1 7 7 C 1.37879 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00114 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46770 * 300.00020 * 9 7 2 11 11 N 1.46898 * 109.47191 * 179.97438 * 9 7 2 12 12 C 1.46901 * 110.99738 * 154.99980 * 11 9 7 13 13 C 1.50698 * 109.46935 * 179.97438 * 12 11 9 14 14 C 1.34336 * 126.16649 * 95.00215 * 13 12 11 15 15 O 1.34750 * 107.11079 * 180.26471 * 14 13 12 16 16 C 1.33966 * 107.75844 * 359.56936 * 15 14 13 17 17 N 1.30260 * 108.75977 * 0.43881 * 16 15 14 18 18 C 1.52997 * 109.46985 * 59.99616 * 9 7 2 19 19 F 1.39903 * 109.46932 * 180.02562 * 18 9 7 20 20 F 1.39904 * 109.47639 * 300.00197 * 18 9 7 21 21 F 1.39902 * 109.47478 * 60.00345 * 18 9 7 22 22 H 0.97003 * 120.00342 * 0.02562 * 1 2 3 23 23 H 1.00894 * 110.99909 * 31.04707 * 11 9 7 24 24 H 1.09002 * 109.47355 * 59.99642 * 12 11 9 25 25 H 1.08998 * 109.46943 * 299.99754 * 12 11 9 26 26 H 1.08002 * 126.43952 * 359.97438 * 14 13 12 27 27 H 1.08002 * 125.62243 * 180.13948 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 2.2057 -3.6157 -0.0027 12 6 1.6030 -4.8241 0.5758 13 6 2.6094 -5.9455 0.5573 14 6 3.4229 -6.2975 1.5668 15 8 4.1624 -7.3381 1.1356 16 6 3.7873 -7.6133 -0.1207 17 7 2.8551 -6.7744 -0.4728 18 6 0.3719 -2.5794 -1.2513 19 9 -0.3280 -3.7907 -1.2520 20 9 -0.5373 -1.5160 -1.2509 21 9 1.1765 -2.5045 -2.3933 22 1 -0.4851 0.8400 -0.0004 23 1 3.0540 -3.3665 0.4833 24 1 0.7294 -5.1105 -0.0098 25 1 1.3013 -4.6231 1.6038 26 1 3.4774 -5.8309 2.5392 27 1 4.1943 -8.3980 -0.7412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922646341.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:05 Heat of formation + Delta-G solvation = -107.472706 kcal Electronic energy + Delta-G solvation = -18778.000041 eV Core-core repulsion = 15123.680825 eV Total energy + Delta-G solvation = -3654.319216 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.24815 -45.90670 -45.49749 -43.13411 -36.21468 -34.43837 -32.70210 -30.49200 -27.94639 -24.64832 -24.43083 -22.57752 -20.96144 -20.71867 -17.66299 -16.99399 -16.71443 -16.56274 -16.33774 -15.43839 -14.95678 -14.86875 -14.52030 -13.62668 -13.42704 -13.02029 -12.85756 -12.58293 -12.34095 -12.14284 -11.96716 -11.77144 -11.32012 -11.00655 -10.91350 -10.76629 -10.56348 -10.31439 -10.09591 -9.39277 -8.78110 -8.65956 -7.67639 -6.17659 -4.38496 1.62114 2.87231 3.00938 3.22285 3.29087 3.31071 4.23222 4.30750 4.59749 4.94353 4.99498 5.12517 5.25371 5.70705 5.88652 5.90367 6.00060 6.07889 6.25285 6.41591 6.49005 6.84955 7.47302 7.66859 7.83524 7.91784 8.22577 8.65309 9.28082 10.74591 Molecular weight = 250.07amu Principal moments of inertia in cm(-1) A = 0.030058 B = 0.007011 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.315311 B = 3992.881138 C = 4547.102444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.062 3.938 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.188 3.812 10 H 0.042 0.958 11 N -0.674 5.674 12 C 0.123 3.877 13 C 0.007 3.993 14 C -0.079 4.079 15 O -0.212 6.212 16 C 0.158 3.842 17 N -0.467 5.467 18 C 0.439 3.561 19 F -0.229 7.229 20 F -0.142 7.142 21 F -0.199 7.199 22 H 0.265 0.735 23 H 0.347 0.653 24 H 0.096 0.904 25 H 0.044 0.956 26 H 0.213 0.787 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -9.608 3.334 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.093 0.907 9 C 0.078 3.922 10 H 0.059 0.941 11 N -0.307 5.307 12 C -0.006 4.006 13 C -0.113 4.113 14 C -0.150 4.150 15 O -0.098 6.098 16 C -0.069 4.069 17 N -0.196 5.196 18 C 0.383 3.617 19 F -0.211 7.211 20 F -0.123 7.123 21 F -0.180 7.180 22 H 0.076 0.924 23 H 0.167 0.833 24 H 0.114 0.886 25 H 0.062 0.938 26 H 0.230 0.770 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.913 -9.664 2.099 10.636 hybrid contribution 0.569 1.004 1.172 1.645 sum 4.481 -8.660 3.271 10.285 Atomic orbital electron populations 1.70390 1.05828 1.27037 1.44682 1.25104 0.95118 1.00097 0.94252 0.86271 0.79531 0.81901 0.78465 1.20258 1.20989 1.19583 1.20883 0.93698 0.88262 1.54843 0.90678 1.20092 0.91294 0.90581 0.90267 0.94097 1.60161 1.08068 1.03468 1.58970 1.20493 0.94679 0.86930 0.98510 1.21830 1.00909 0.99149 0.89377 1.24828 0.96136 0.91915 1.02086 1.84448 1.53025 1.42366 1.29930 1.28103 0.95378 1.01018 0.82396 1.70393 1.14699 1.04994 1.29492 1.22511 0.79847 0.71948 0.87373 1.92956 1.81812 1.49262 1.97049 1.93397 1.68618 1.53986 1.96322 1.93004 1.74246 1.96012 1.54773 0.92401 0.83337 0.88552 0.93786 0.77041 0.73816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.24 9.50 55.43 0.53 -22.71 15 2 C 0.06 1.64 5.20 -17.82 -0.09 1.54 15 3 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.54 -14.08 8.33 -34.44 -0.29 -14.36 15 8 H 0.08 1.91 7.62 -52.49 -0.40 1.51 15 9 C 0.19 4.60 2.26 -68.87 -0.16 4.45 15 10 H 0.04 1.04 7.80 -51.93 -0.41 0.64 15 11 N -0.67 -14.23 6.21 -109.22 -0.68 -14.91 15 12 C 0.12 2.25 5.93 -4.98 -0.03 2.22 15 13 C 0.01 0.12 6.62 -82.81 -0.55 -0.43 15 14 C -0.08 -1.03 12.08 29.36 0.35 -0.67 15 15 O -0.21 -2.68 10.77 5.37 0.06 -2.62 15 16 C 0.16 1.94 13.23 52.10 0.69 2.63 15 17 N -0.47 -7.82 11.29 -11.18 -0.13 -7.94 15 18 C 0.44 11.37 2.81 37.16 0.10 11.47 15 19 F -0.23 -5.55 15.04 2.25 0.03 -5.51 15 20 F -0.14 -3.94 12.91 2.25 0.03 -3.91 15 21 F -0.20 -5.32 16.94 2.25 0.04 -5.28 15 22 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 23 H 0.35 6.85 8.22 -39.29 -0.32 6.53 15 24 H 0.10 1.93 6.03 -51.93 -0.31 1.62 15 25 H 0.04 0.72 8.06 -51.93 -0.42 0.30 15 26 H 0.21 2.02 8.06 -52.49 -0.42 1.59 15 27 H 0.25 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 252.14 15.07 3.80 3.80 Total: -1.00 -30.91 252.14 -3.14 -34.05 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -1.84 Total: 2.69 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.04 Total: 6.84 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.28 Total: -45.57 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.06 Total: -2.62 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.71 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.91 -3.14 -34.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922646341.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.421 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds