Wall clock time and date at job start Mon Mar 30 2020 21:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99740 * 2 1 4 4 H 1.48497 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47118 * 300.00044 * 3 2 1 6 6 H 1.48502 * 109.47384 * 59.99803 * 3 2 1 7 7 C 1.37875 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99792 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46754 * 5.01366 * 9 7 2 11 11 S 1.81625 * 109.46719 * 125.01175 * 9 7 2 12 12 C 1.76375 * 102.17665 * 166.89312 * 11 9 7 13 13 C 1.38734 * 120.49035 * 150.06343 * 12 11 9 14 14 C 1.38029 * 119.86810 * 178.75523 * 13 12 11 15 15 C 1.38661 * 120.24711 * 0.09098 * 14 13 12 16 16 C 1.37681 * 120.56359 * 0.53968 * 15 14 13 17 17 C 1.39881 * 120.04483 * 0.30466 * 16 15 14 18 18 C 1.46624 * 120.18990 * 179.57160 * 17 16 15 19 19 O 1.21606 * 117.63851 * 14.91368 * 18 17 16 20 20 N 1.33089 * 124.72140 * 194.88221 * 18 17 16 21 21 N 1.36596 * 118.09481 * 187.88457 * 20 18 17 22 22 H 0.96998 * 120.00707 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.07200 * 359.03050 * 13 12 11 24 24 H 1.07991 * 119.87948 * 180.11032 * 14 13 12 25 25 H 1.07993 * 119.71516 * 180.52247 * 15 14 13 26 26 H 1.08003 * 119.97500 * 180.28395 * 16 15 14 27 27 H 1.00905 * 111.00059 * 354.76725 * 21 20 18 28 28 H 1.00895 * 111.00708 * 118.72728 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.1828 -2.3019 -0.0899 11 16 1.7988 -3.5142 -1.4035 12 6 1.1189 -5.0930 -1.0082 13 6 0.7549 -5.9748 -2.0155 14 6 0.2481 -7.2171 -1.6914 15 6 0.0996 -7.5861 -0.3631 16 6 0.4443 -6.7171 0.6477 17 6 0.9431 -5.4471 0.3396 18 6 1.3024 -4.5156 1.4135 19 8 1.4176 -4.9671 2.5368 20 7 1.5120 -3.2119 1.2475 21 7 1.9990 -2.4988 2.3059 22 1 -0.4851 0.8400 -0.0004 23 1 0.8720 -5.6917 -3.0511 24 1 -0.0337 -7.9044 -2.4753 25 1 -0.2899 -8.5634 -0.1193 26 1 0.3291 -7.0161 1.6791 27 1 2.0588 -3.0741 3.1327 28 1 2.8942 -2.0893 2.0849 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088732494.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:10 Heat of formation + Delta-G solvation = 24.463602 kcal Electronic energy + Delta-G solvation = -15876.266222 eV Core-core repulsion = 13212.277806 eV Total energy + Delta-G solvation = -2663.988417 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93908 -38.07979 -35.54964 -33.18024 -31.49000 -30.66551 -29.12467 -27.36598 -23.77761 -22.75196 -22.35534 -19.57471 -17.65588 -17.37446 -16.52281 -16.39348 -15.36775 -14.94285 -14.66012 -14.13446 -13.97022 -13.52666 -13.26189 -12.89805 -12.63503 -12.31465 -11.62989 -11.30802 -11.21776 -10.93210 -10.54319 -10.21651 -10.17833 -9.49380 -9.23185 -9.21627 -9.00908 -8.69860 -7.09235 -6.91633 -6.60583 -4.77502 1.11198 1.58233 2.30504 3.02228 3.05579 3.13213 3.17352 3.39552 3.76753 3.98507 4.17348 4.80505 5.06285 5.16135 5.22566 5.49479 5.73251 5.88976 5.95835 6.20855 6.50486 6.52378 6.66136 6.76649 7.09066 7.21650 7.26458 7.51342 7.95912 8.31538 8.45506 8.86185 9.08349 10.37177 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033328 B = 0.007873 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.938340 B = 3555.795793 C = 4106.546610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.090 3.910 3 Si 0.921 3.079 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.482 4.482 8 H 0.076 0.924 9 C 0.302 3.698 10 H 0.108 0.892 11 S -0.196 6.196 12 C -0.048 4.048 13 C -0.116 4.116 14 C -0.088 4.088 15 C -0.148 4.148 16 C -0.048 4.048 17 C -0.128 4.128 18 C 0.515 3.485 19 O -0.582 6.582 20 N -0.416 5.416 21 N -0.585 5.585 22 H 0.279 0.721 23 H 0.130 0.870 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.349 0.651 28 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.902 -6.992 -2.729 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.124 4.124 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.527 4.527 8 H 0.094 0.906 9 C 0.098 3.902 10 H 0.125 0.875 11 S 0.052 5.948 12 C -0.162 4.162 13 C -0.139 4.139 14 C -0.108 4.108 15 C -0.169 4.169 16 C -0.069 4.069 17 C -0.139 4.139 18 C 0.302 3.698 19 O -0.465 6.465 20 N -0.236 5.236 21 N -0.214 5.214 22 H 0.089 0.911 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.150 0.850 27 H 0.166 0.834 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.805 -6.195 -3.282 7.057 hybrid contribution 0.481 -0.344 0.988 1.151 sum 1.286 -6.539 -2.294 7.048 Atomic orbital electron populations 1.69856 1.06719 1.28994 1.41585 1.25189 0.95039 1.00538 0.91682 0.86068 0.80122 0.80958 0.78280 1.18878 1.20176 1.19977 1.20725 0.93728 0.87489 1.50781 0.90553 1.21266 1.02014 0.89183 0.77780 0.87452 1.86591 1.68822 0.99996 1.39383 1.22615 0.98974 0.99936 0.94636 1.20879 1.00701 0.93912 0.98451 1.21244 0.97395 0.95762 0.96396 1.20974 1.03355 0.99917 0.92656 1.21159 0.94347 0.91379 0.99976 1.19737 1.06596 0.95895 0.91675 1.18094 0.80265 0.82469 0.88925 1.90649 1.55735 1.76414 1.23730 1.48077 1.59067 1.04520 1.11903 1.60094 1.33506 1.29996 0.97798 0.91123 0.85247 0.85737 0.85791 0.85026 0.83379 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.44 12.61 55.43 0.70 -20.74 15 2 C 0.09 2.17 5.46 -17.82 -0.10 2.07 15 3 Si 0.92 18.63 29.54 -169.99 -5.02 13.61 15 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.48 -11.70 6.79 -34.44 -0.23 -11.94 15 8 H 0.08 1.82 7.75 -52.48 -0.41 1.41 15 9 C 0.30 7.31 3.69 -5.42 -0.02 7.29 15 10 H 0.11 2.90 6.93 -51.93 -0.36 2.54 15 11 S -0.20 -4.29 21.67 -107.50 -2.33 -6.61 15 12 C -0.05 -0.96 6.04 -38.56 -0.23 -1.19 15 13 C -0.12 -1.91 9.80 -39.47 -0.39 -2.30 15 14 C -0.09 -1.22 10.04 -39.50 -0.40 -1.61 15 15 C -0.15 -2.12 10.01 -39.63 -0.40 -2.51 15 16 C -0.05 -0.85 9.53 -39.17 -0.37 -1.22 15 17 C -0.13 -2.68 5.82 -105.06 -0.61 -3.29 15 18 C 0.52 11.97 7.43 -13.63 -0.10 11.87 15 19 O -0.58 -14.04 15.21 5.27 0.08 -13.96 15 20 N -0.42 -9.78 3.58 -60.46 -0.22 -10.00 15 21 N -0.59 -12.76 9.49 60.35 0.57 -12.19 15 22 H 0.28 6.61 8.31 -40.82 -0.34 6.27 15 23 H 0.13 1.89 8.06 -52.48 -0.42 1.47 15 24 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 25 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.13 2.24 7.61 -52.48 -0.40 1.84 15 27 H 0.35 7.25 7.28 -181.36 -1.32 5.93 15 28 H 0.34 6.96 8.05 -181.37 -1.46 5.50 15 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -27.74 258.10 -9.52 -37.27 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.35 Total: 11.55 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.85 Total: -2.82 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 1.06 Total: -42.93 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.08 Total: -13.96 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -2.33 Total: -6.61 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.74 -9.52 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088732494.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.733 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds