Wall clock time and date at job start Mon Mar 30 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99812 * 2 1 4 4 H 1.48510 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47280 * 300.00146 * 3 2 1 6 6 H 1.48502 * 109.46847 * 60.00812 * 3 2 1 7 7 C 1.37876 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00279 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99568 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46647 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99795 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47008 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47158 * 64.99874 * 12 11 10 14 14 C 1.35601 * 116.99687 * 179.97438 * 13 12 11 15 15 C 1.38683 * 120.17278 * 359.95134 * 14 13 12 16 16 C 1.38050 * 120.11330 * 180.02562 * 15 14 13 17 17 C 1.38635 * 120.45286 * 0.02562 * 16 15 14 18 18 C 1.37674 * 120.33597 * 0.02562 * 17 16 15 19 19 C 1.40012 * 119.88240 * 359.97438 * 18 17 16 20 20 C 1.46785 * 120.22034 * 180.02562 * 19 18 17 21 21 O 1.21302 * 119.99887 * 179.97438 * 20 19 18 22 22 H 0.97002 * 120.00002 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47291 * 60.00633 * 9 7 2 24 24 H 1.08999 * 109.46970 * 299.99718 * 9 7 2 25 25 H 1.08994 * 109.47371 * 59.99913 * 11 10 9 26 26 H 1.09006 * 109.46956 * 299.99394 * 11 10 9 27 27 H 1.08995 * 109.47327 * 304.99740 * 12 11 10 28 28 H 1.09009 * 109.46889 * 184.99767 * 12 11 10 29 29 H 1.07999 * 119.94598 * 0.04542 * 15 14 13 30 30 H 1.07994 * 119.77766 * 180.27601 * 16 15 14 31 31 H 1.08000 * 119.82889 * 179.97438 * 17 16 15 32 32 H 1.08006 * 120.05229 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.00625 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9561 -0.0017 13 8 3.3876 -5.8901 1.2193 14 6 4.3919 -6.7870 1.3800 15 6 4.6635 -7.7148 0.3857 16 6 5.6859 -8.6277 0.5508 17 6 6.4486 -8.6267 1.7085 18 6 6.1943 -7.7146 2.7079 19 6 5.1609 -6.7825 2.5552 20 6 4.8837 -5.8063 3.6158 21 8 3.9877 -5.0002 3.4791 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 0.9453 -4.9822 -0.8913 26 1 0.9448 -4.9827 0.8887 27 1 3.3216 -5.7952 -0.8435 28 1 2.1821 -6.9374 -0.0917 29 1 4.0745 -7.7231 -0.5195 30 1 5.8956 -9.3449 -0.2289 31 1 7.2457 -9.3457 1.8272 32 1 6.7911 -7.7183 3.6081 33 1 5.4781 -5.8051 4.5175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292651058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:33 Heat of formation + Delta-G solvation = -92.731249 kcal Electronic energy + Delta-G solvation = -17462.512706 eV Core-core repulsion = 14454.229811 eV Total energy + Delta-G solvation = -3008.282894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37475 -38.27255 -37.49166 -36.36595 -32.72136 -31.62680 -30.63171 -29.24805 -26.86715 -24.67137 -23.51709 -22.26957 -21.40871 -20.89827 -18.20396 -16.70434 -16.47530 -16.20809 -16.02047 -15.08816 -14.88441 -14.76253 -14.35545 -14.20985 -14.06647 -13.70923 -13.44278 -12.74214 -12.44137 -12.05616 -11.72989 -11.63075 -11.21139 -11.06940 -10.79978 -10.69432 -10.51069 -9.99403 -9.46946 -9.17831 -9.04768 -8.80911 -8.26471 -8.14055 -6.05955 -4.06751 0.66613 1.31244 2.59630 3.25685 3.33442 3.39381 3.46935 3.73304 4.27363 4.37835 4.61447 4.72752 4.78460 4.98880 5.05844 5.22616 5.30769 5.36297 5.40754 5.44637 5.73621 5.87587 5.93054 6.05354 6.15332 6.19532 6.26712 6.59584 7.12075 7.46094 7.48234 7.72930 7.85111 8.19484 8.60279 9.06265 9.57601 11.05890 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.030879 B = 0.004509 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.560813 B = 6208.571418 C = 6619.188590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.388 6.388 11 C 0.065 3.935 12 C 0.059 3.941 13 O -0.267 6.267 14 C 0.193 3.807 15 C -0.230 4.230 16 C -0.048 4.048 17 C -0.184 4.184 18 C -0.034 4.034 19 C -0.229 4.229 20 C 0.366 3.634 21 O -0.424 6.424 22 H 0.263 0.737 23 H 0.005 0.995 24 H 0.007 0.993 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.993 -19.485 3.003 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.307 6.307 11 C -0.013 4.013 12 C -0.016 4.016 13 O -0.177 6.177 14 C 0.144 3.856 15 C -0.249 4.249 16 C -0.067 4.067 17 C -0.202 4.202 18 C -0.052 4.052 19 C -0.231 4.231 20 C 0.222 3.778 21 O -0.295 6.295 22 H 0.072 0.928 23 H 0.023 0.977 24 H 0.025 0.975 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.446 -18.700 3.050 21.636 hybrid contribution 0.136 0.511 -0.344 0.631 sum 10.583 -18.189 2.706 21.217 Atomic orbital electron populations 1.69973 1.06095 1.26991 1.50891 1.24941 0.94978 0.99414 0.95190 0.86278 0.80074 0.82572 0.77572 1.19474 1.20874 1.20793 1.21094 0.94136 0.89307 1.50382 0.91507 1.20230 0.88760 0.83569 0.95398 1.87933 1.35146 1.12487 1.95174 1.22238 0.93114 0.85592 1.00383 1.23093 0.94194 0.98720 0.85639 1.86441 1.41776 1.50570 1.38959 1.19475 0.86727 0.86931 0.92478 1.21331 1.03335 0.99663 1.00561 1.21142 0.92747 0.95969 0.96812 1.20944 1.02498 1.01767 0.94997 1.21193 0.93736 0.91874 0.98415 1.20511 1.01356 1.04085 0.97175 1.23731 0.84149 0.80982 0.88937 1.90712 1.26880 1.32907 1.78957 0.92755 0.97708 0.97487 0.92193 0.93181 0.91138 0.91204 0.84923 0.85615 0.85617 0.84682 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 22.68 29.54 -169.99 -5.02 17.66 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.51 -15.83 9.43 -34.44 -0.32 -16.16 16 8 H 0.07 2.08 7.81 -52.48 -0.41 1.67 16 9 C 0.19 5.63 5.69 36.01 0.20 5.83 16 10 O -0.39 -10.07 10.29 -40.08 -0.41 -10.49 16 11 C 0.06 1.26 6.32 37.16 0.23 1.49 16 12 C 0.06 0.93 5.12 37.16 0.19 1.12 16 13 O -0.27 -4.96 8.17 -44.35 -0.36 -5.32 16 14 C 0.19 2.91 6.71 -38.59 -0.26 2.65 16 15 C -0.23 -2.73 9.03 -39.49 -0.36 -3.09 16 16 C -0.05 -0.46 10.03 -39.50 -0.40 -0.85 16 17 C -0.18 -1.59 10.02 -39.64 -0.40 -1.99 16 18 C -0.03 -0.32 9.79 -39.12 -0.38 -0.70 16 19 C -0.23 -3.03 5.88 -104.95 -0.62 -3.65 16 20 C 0.37 5.11 11.44 34.19 0.39 5.50 16 21 O -0.42 -8.50 15.98 -16.37 -0.26 -8.76 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 28 H 0.07 0.84 7.66 -51.92 -0.40 0.44 16 29 H 0.13 1.37 6.30 -52.49 -0.33 1.03 16 30 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -37.01 296.06 -6.72 -43.73 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -4.05 Total: -5.98 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.81 Total: -8.27 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.74 Total: -27.04 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.04 Total: -24.57 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -37.01 -6.72 -43.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292651058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.996 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds