Wall clock time and date at job start Mon Mar 30 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99812 * 2 1 4 4 H 1.48510 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47280 * 300.00146 * 3 2 1 6 6 H 1.48502 * 109.46847 * 60.00812 * 3 2 1 7 7 C 1.37876 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00279 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99568 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46647 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99795 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47008 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47158 * 64.99874 * 12 11 10 14 14 C 1.35601 * 116.99687 * 179.97438 * 13 12 11 15 15 C 1.38683 * 120.17278 * 359.95134 * 14 13 12 16 16 C 1.38050 * 120.11330 * 180.02562 * 15 14 13 17 17 C 1.38635 * 120.45286 * 0.02562 * 16 15 14 18 18 C 1.37674 * 120.33597 * 0.02562 * 17 16 15 19 19 C 1.40012 * 119.88240 * 359.97438 * 18 17 16 20 20 C 1.46785 * 120.22034 * 180.02562 * 19 18 17 21 21 O 1.21302 * 119.99887 * 179.97438 * 20 19 18 22 22 H 0.97002 * 120.00002 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47291 * 60.00633 * 9 7 2 24 24 H 1.08999 * 109.46970 * 299.99718 * 9 7 2 25 25 H 1.08994 * 109.47371 * 59.99913 * 11 10 9 26 26 H 1.09006 * 109.46956 * 299.99394 * 11 10 9 27 27 H 1.08995 * 109.47327 * 304.99740 * 12 11 10 28 28 H 1.09009 * 109.46889 * 184.99767 * 12 11 10 29 29 H 1.07999 * 119.94598 * 0.04542 * 15 14 13 30 30 H 1.07994 * 119.77766 * 180.27601 * 16 15 14 31 31 H 1.08000 * 119.82889 * 179.97438 * 17 16 15 32 32 H 1.08006 * 120.05229 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.00625 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9561 -0.0017 13 8 3.3876 -5.8901 1.2193 14 6 4.3919 -6.7870 1.3800 15 6 4.6635 -7.7148 0.3857 16 6 5.6859 -8.6277 0.5508 17 6 6.4486 -8.6267 1.7085 18 6 6.1943 -7.7146 2.7079 19 6 5.1609 -6.7825 2.5552 20 6 4.8837 -5.8063 3.6158 21 8 3.9877 -5.0002 3.4791 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 0.9453 -4.9822 -0.8913 26 1 0.9448 -4.9827 0.8887 27 1 3.3216 -5.7952 -0.8435 28 1 2.1821 -6.9374 -0.0917 29 1 4.0745 -7.7231 -0.5195 30 1 5.8956 -9.3449 -0.2289 31 1 7.2457 -9.3457 1.8272 32 1 6.7911 -7.7183 3.6081 33 1 5.4781 -5.8051 4.5175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292651058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:33 Heat of formation + Delta-G solvation = -117.953396 kcal Electronic energy + Delta-G solvation = -17463.606420 eV Core-core repulsion = 14454.229811 eV Total energy + Delta-G solvation = -3009.376609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38514 -39.53616 -38.74526 -37.99433 -34.99927 -32.56494 -31.86134 -30.45230 -29.01494 -25.61777 -24.87357 -24.41074 -22.50265 -21.88233 -19.23148 -18.71583 -17.81146 -17.65739 -17.18390 -16.79535 -16.32762 -16.10799 -15.83350 -15.55381 -15.22025 -15.05001 -14.75597 -14.19315 -13.77699 -13.45079 -13.28486 -12.93069 -12.76768 -12.73093 -12.43574 -12.15233 -12.00657 -11.87548 -11.32651 -10.94557 -10.56723 -10.32210 -10.00000 -9.20580 -8.36644 -6.49414 -0.21582 0.48020 1.35671 1.38560 1.53164 1.63732 2.18459 2.31688 2.88204 2.96626 3.04674 3.39987 3.76843 3.92000 4.04755 4.09906 4.23450 4.36576 4.38736 4.40032 4.58011 4.60180 4.71833 4.77910 5.00297 5.10872 5.27152 5.38027 5.49250 5.51138 5.85306 5.90147 6.40481 6.48165 6.71814 6.74852 7.22203 8.76291 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.030879 B = 0.004509 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.560813 B = 6208.571418 C = 6619.188590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.052 3.948 12 C 0.065 3.935 13 O -0.313 6.313 14 C 0.150 3.850 15 C -0.241 4.241 16 C -0.043 4.043 17 C -0.176 4.176 18 C -0.021 4.021 19 C -0.260 4.260 20 C 0.370 3.630 21 O -0.502 6.502 22 H 0.273 0.727 23 H -0.004 1.004 24 H -0.020 1.020 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.509 -21.002 2.919 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.025 4.025 12 C -0.009 4.009 13 O -0.225 6.225 14 C 0.103 3.897 15 C -0.260 4.260 16 C -0.061 4.061 17 C -0.194 4.194 18 C -0.039 4.039 19 C -0.262 4.262 20 C 0.231 3.769 21 O -0.377 6.377 22 H 0.081 0.919 23 H 0.014 0.986 24 H -0.002 1.002 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.159 0.841 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.193 0.807 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.983 -20.273 2.966 24.256 hybrid contribution -0.563 0.757 -0.297 0.989 sum 12.420 -19.516 2.669 23.286 Atomic orbital electron populations 1.70068 1.07710 1.28737 1.50324 1.25987 0.96054 1.03414 0.93661 0.85106 0.78438 0.77052 0.78600 1.19192 1.18891 1.19469 1.21388 0.93891 0.91046 1.52627 0.92625 1.19858 0.88583 0.84612 0.93548 1.87877 1.35523 1.14317 1.95240 1.22641 0.95008 0.83774 1.01032 1.23061 0.93489 0.98841 0.85550 1.86367 1.43561 1.52808 1.39736 1.19990 0.87166 0.87952 0.94605 1.21536 1.04540 0.99713 1.00220 1.21621 0.91254 0.95236 0.97968 1.21486 1.02510 1.01486 0.93945 1.21666 0.92105 0.90080 1.00038 1.20837 1.02973 1.05541 0.96846 1.24672 0.82630 0.79191 0.90405 1.90696 1.30388 1.36054 1.80574 0.91859 0.98617 1.00191 0.89709 0.94227 0.90615 0.87120 0.84054 0.82323 0.81786 0.80663 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.99 46.84 29.54 68.60 2.03 48.86 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.55 -35.58 9.43 25.60 0.24 -35.34 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.79 5.69 71.24 0.41 13.19 16 10 O -0.41 -22.56 10.29 -144.34 -1.49 -24.05 16 11 C 0.05 2.15 6.32 71.98 0.45 2.60 16 12 C 0.07 2.13 5.12 71.98 0.37 2.50 16 13 O -0.31 -12.26 8.17 -64.40 -0.53 -12.79 16 14 C 0.15 4.59 6.71 22.91 0.15 4.75 16 15 C -0.24 -5.40 9.03 22.33 0.20 -5.20 16 16 C -0.04 -0.65 10.03 22.32 0.22 -0.43 16 17 C -0.18 -2.24 10.02 22.23 0.22 -2.02 16 18 C -0.02 -0.32 9.79 22.57 0.22 -0.10 16 19 C -0.26 -6.71 5.88 -20.08 -0.12 -6.82 16 20 C 0.37 10.44 11.44 70.06 0.80 11.25 16 21 O -0.50 -21.52 15.98 17.85 0.29 -21.23 16 22 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 25 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.08 2.32 7.66 -2.39 -0.02 2.30 16 28 H 0.11 2.60 7.66 -2.38 -0.02 2.59 16 29 H 0.14 2.73 6.30 -2.91 -0.02 2.71 16 30 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -86.76 296.06 5.32 -81.44 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.10 Total: 0.49 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.64 Total: -14.72 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.01 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -1.73 Total: -58.07 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -86.76 5.32 -81.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292651058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.514 kcal (2) G-P(sol) polarization free energy of solvation -86.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds