Wall clock time and date at job start Mon Mar 30 2020 21:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47213 * 269.99985 * 3 2 1 5 5 H 1.48501 * 109.46998 * 29.99538 * 3 2 1 6 6 H 1.48496 * 109.47039 * 149.99831 * 3 2 1 7 7 C 1.39886 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99878 * 192.36456 * 7 2 1 9 9 C 1.41215 * 120.00280 * 12.36274 * 7 2 1 10 10 C 1.40836 * 120.18025 * 208.20512 * 9 7 2 11 11 C 1.36434 * 119.81411 * 179.72125 * 10 9 7 12 12 C 1.39319 * 120.18099 * 0.27621 * 11 10 9 13 13 O 1.35673 * 119.81503 * 179.97438 * 12 11 10 14 14 C 1.42895 * 117.00264 * 354.40101 * 13 12 11 15 15 H 1.09002 * 110.45801 * 326.41602 * 14 13 12 16 16 C 1.54481 * 110.51313 * 89.01708 * 14 13 12 17 17 O 1.44786 * 104.62750 * 94.70145 * 16 14 13 18 18 C 1.44423 * 105.29577 * 40.54150 * 17 16 14 19 19 C 1.54486 * 104.80003 * 319.45163 * 18 17 16 20 20 H 1.09006 * 110.50983 * 142.62668 * 19 18 17 21 21 O 1.42902 * 110.50875 * 265.33059 * 19 18 17 22 22 C 1.39310 * 120.36505 * 0.02562 * 12 11 10 23 23 C 1.36430 * 120.18739 * 359.97438 * 22 12 11 24 24 H 0.96991 * 120.00155 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.09317 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.91037 * 180.25547 * 11 10 9 27 27 H 1.08995 * 110.37722 * 213.50193 * 16 14 13 28 28 H 1.09002 * 110.36975 * 335.83780 * 16 14 13 29 29 H 1.08999 * 110.37096 * 200.62537 * 18 17 16 30 30 H 1.08997 * 110.37481 * 78.28105 * 18 17 16 31 31 H 0.96692 * 114.00375 * 294.64391 * 21 19 18 32 32 H 1.08005 * 119.90709 * 179.97438 * 22 12 11 33 33 H 1.07998 * 120.09772 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4402 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0696 -1.2222 0.2008 9 6 1.3268 -2.4204 -0.2607 10 6 1.7969 -3.6304 0.2854 11 6 1.1294 -4.7932 0.0328 12 6 -0.0109 -4.7866 -0.7677 13 8 -0.6685 -5.9473 -1.0145 14 6 -0.0693 -7.1491 -0.5260 15 1 1.0176 -7.0739 -0.5599 16 6 -0.5466 -7.4460 0.9129 17 8 -1.6648 -8.3509 0.7477 18 6 -1.2690 -9.2575 -0.3045 19 6 -0.5534 -8.3669 -1.3444 20 1 0.2942 -8.8952 -1.7809 21 8 -1.4666 -7.9545 -2.3633 22 6 -0.4788 -3.5949 -1.3169 23 6 0.1770 -2.4235 -1.0741 24 1 -0.4850 0.8400 -0.0004 25 1 2.6808 -3.6373 0.9059 26 1 1.4861 -5.7214 0.4543 27 1 0.2482 -7.9239 1.4854 28 1 -0.8686 -6.5272 1.4030 29 1 -2.1456 -9.7295 -0.7482 30 1 -0.5853 -10.0129 0.0827 31 1 -1.8023 -8.6797 -2.9076 32 1 -1.3633 -3.5984 -1.9368 33 1 -0.1872 -1.5005 -1.5003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304271917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:34 Heat of formation + Delta-G solvation = -125.940481 kcal Electronic energy + Delta-G solvation = -18030.374426 eV Core-core repulsion = 15020.651471 eV Total energy + Delta-G solvation = -3009.722955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29581 -39.73600 -37.82138 -37.01303 -35.14658 -32.10339 -31.15240 -30.74242 -29.43040 -26.79420 -24.25737 -23.44775 -22.53276 -21.54394 -19.30495 -19.06889 -18.02758 -17.63972 -17.22077 -17.00413 -16.19540 -15.75620 -15.58897 -15.21422 -14.78948 -14.37209 -14.10130 -13.98189 -13.68184 -13.50370 -13.14637 -12.83182 -12.56412 -12.52333 -12.36473 -12.26554 -11.68221 -11.63799 -11.19403 -11.13931 -10.90592 -10.52929 -9.57216 -8.86030 -8.55270 -6.24661 0.94359 1.01438 1.40381 1.52038 1.54069 2.24196 2.49150 2.74839 2.87022 3.20484 3.48315 3.67893 3.77845 3.99130 4.12443 4.32087 4.33016 4.35039 4.48388 4.62198 4.70193 4.78207 4.88416 5.06094 5.21568 5.29374 5.56862 5.63985 5.70049 5.86959 6.06594 6.26148 6.57457 6.79868 6.95255 6.96644 7.12030 8.41924 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.054486 B = 0.004665 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.774516 B = 6000.901512 C = 6156.819328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.199 4.199 11 C -0.168 4.168 12 C 0.002 3.998 13 O -0.307 6.307 14 C 0.043 3.957 15 H 0.102 0.898 16 C 0.025 3.975 17 O -0.395 6.395 18 C 0.014 3.986 19 C 0.077 3.923 20 H 0.115 0.885 21 O -0.565 6.565 22 C -0.138 4.138 23 C -0.145 4.145 24 H 0.285 0.715 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.394 0.606 32 H 0.101 0.899 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.265 -15.059 -1.432 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.051 3.949 10 C -0.218 4.218 11 C -0.187 4.187 12 C -0.042 4.042 13 O -0.222 6.222 14 C -0.014 4.014 15 H 0.120 0.880 16 C -0.052 4.052 17 O -0.315 6.315 18 C -0.063 4.063 19 C 0.017 3.983 20 H 0.133 0.867 21 O -0.373 6.373 22 C -0.157 4.157 23 C -0.165 4.165 24 H 0.096 0.904 25 H 0.128 0.872 26 H 0.151 0.849 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.797 -14.356 -1.144 14.424 hybrid contribution 0.265 0.445 -0.146 0.538 sum 1.062 -13.911 -1.289 14.011 Atomic orbital electron populations 1.69883 1.08936 1.30220 1.37896 1.26745 0.95553 1.04497 0.91476 0.85154 0.78929 0.75914 0.79368 1.18816 1.19578 1.18084 1.19718 0.96506 0.91662 1.45097 0.90453 1.17965 0.92820 0.93547 0.90589 1.20870 1.03058 0.92891 1.05027 1.20711 0.96818 0.98765 1.02360 1.18826 0.95906 0.85764 1.03694 1.86095 1.48134 1.12270 1.75746 1.24154 0.98985 0.84255 0.94011 0.87987 1.24146 0.90348 0.94528 0.96158 1.89192 1.39532 1.46007 1.56733 1.24477 1.01632 0.92482 0.87695 1.23547 0.93343 0.92343 0.89049 0.86744 1.86751 1.63916 1.38860 1.47763 1.19995 1.01103 0.91269 1.03328 1.20910 0.98880 0.95927 1.00740 0.90432 0.87191 0.84926 0.87748 0.90461 0.86949 0.88135 0.75600 0.88056 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.77 10.90 21.82 0.24 -45.53 16 2 C 0.03 1.54 5.22 85.23 0.44 1.98 16 3 Si 0.99 39.19 29.58 68.60 2.03 41.22 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.50 -27.37 9.05 23.40 0.21 -27.15 16 8 H 0.08 4.04 7.88 -2.91 -0.02 4.01 16 9 C 0.05 2.92 5.55 -21.28 -0.12 2.80 16 10 C -0.20 -9.72 9.74 22.48 0.22 -9.50 16 11 C -0.17 -7.34 8.79 22.11 0.19 -7.14 16 12 C 0.00 0.10 6.69 22.79 0.15 0.25 16 13 O -0.31 -13.01 8.96 -69.67 -0.62 -13.64 16 14 C 0.04 1.31 2.93 31.61 0.09 1.41 16 15 H 0.10 2.76 6.27 -2.39 -0.01 2.74 16 16 C 0.02 0.71 6.94 72.49 0.50 1.21 16 17 O -0.40 -11.54 11.66 -148.98 -1.74 -13.28 16 18 C 0.01 0.25 7.38 72.49 0.53 0.79 16 19 C 0.08 1.70 4.49 31.61 0.14 1.84 16 20 H 0.12 1.66 8.14 -2.38 -0.02 1.65 16 21 O -0.57 -14.94 12.49 -128.74 -1.61 -16.54 16 22 C -0.14 -7.10 9.92 22.11 0.22 -6.88 16 23 C -0.14 -8.03 8.61 22.48 0.19 -7.84 16 24 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 25 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 26 H 0.13 4.63 5.81 -2.91 -0.02 4.61 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.62 8.09 -2.39 -0.02 2.60 16 29 H 0.11 1.72 8.09 -2.39 -0.02 1.70 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.39 5.54 9.12 -74.06 -0.68 4.86 16 32 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.11 6.25 6.25 -2.91 -0.02 6.23 16 Total: -1.00 -70.85 280.55 1.55 -69.30 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.46 Total: 26.71 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 2.79 Total: -48.23 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.24 Total: -45.53 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -3.97 Total: -43.46 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -70.85 1.55 -69.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304271917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.640 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds