Wall clock time and date at job start Mon Mar 30 2020 21:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47561 * 275.32345 * 3 2 1 5 5 H 1.48492 * 109.47321 * 35.32489 * 3 2 1 6 6 H 1.48503 * 109.47021 * 155.32507 * 3 2 1 7 7 C 1.39890 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99747 * 345.14877 * 7 2 1 9 9 C 1.41213 * 120.00238 * 165.15264 * 7 2 1 10 10 C 1.40836 * 120.17687 * 331.60588 * 9 7 2 11 11 C 1.36444 * 119.81041 * 179.97438 * 10 9 7 12 12 C 1.39309 * 120.18415 * 0.02562 * 11 10 9 13 13 O 1.35674 * 119.81970 * 179.97438 * 12 11 10 14 14 C 1.42893 * 117.00272 * 185.32764 * 13 12 11 15 15 H 1.09001 * 110.56908 * 33.50990 * 14 13 12 16 16 C 1.54482 * 110.51071 * 270.83507 * 14 13 12 17 17 O 1.44433 * 104.80237 * 265.33570 * 16 14 13 18 18 C 1.44425 * 105.27343 * 319.48361 * 17 16 14 19 19 C 1.54480 * 104.80151 * 40.51305 * 18 17 16 20 20 H 1.09003 * 110.63114 * 217.31246 * 19 18 17 21 21 O 1.42901 * 110.51145 * 94.66775 * 19 18 17 22 22 C 1.39321 * 120.36717 * 0.27180 * 12 11 10 23 23 C 1.36440 * 120.17943 * 359.44214 * 22 12 11 24 24 H 0.97002 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.09733 * 359.95489 * 10 9 7 26 26 H 1.07996 * 119.90886 * 180.02562 * 11 10 9 27 27 H 1.09001 * 110.37340 * 24.15931 * 16 14 13 28 28 H 1.09000 * 110.37350 * 146.50205 * 16 14 13 29 29 H 1.09000 * 110.37533 * 281.68638 * 18 17 16 30 30 H 1.08998 * 110.37120 * 159.34101 * 18 17 16 31 31 H 0.96696 * 114.00605 * 65.34867 * 21 19 18 32 32 H 1.07990 * 119.90927 * 179.70590 * 22 12 11 33 33 H 1.08004 * 120.09275 * 180.26979 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3778 2.1115 -1.3940 5 1 1.5011 2.6175 0.8095 6 1 3.5921 1.4103 0.5845 7 6 2.0082 -1.2115 -0.0005 8 1 1.4953 -2.1312 0.2388 9 6 3.3850 -1.2318 -0.3139 10 6 3.9313 -0.2538 -1.1674 11 6 5.2627 -0.2802 -1.4648 12 6 6.0809 -1.2712 -0.9272 13 8 7.4037 -1.2908 -1.2282 14 6 8.1638 -2.3981 -0.7404 15 1 7.5552 -3.3022 -0.7226 16 6 8.7215 -2.0935 0.6676 17 8 10.0535 -1.5857 0.4350 18 6 10.5967 -2.4110 -0.6184 19 6 9.4257 -2.6119 -1.6059 20 1 9.4397 -3.6209 -2.0181 21 8 9.4835 -1.6431 -2.6548 22 6 5.5473 -2.2460 -0.0869 23 6 4.2191 -2.2304 0.2250 24 1 -0.4850 0.8401 -0.0004 25 1 3.2982 0.5148 -1.5857 26 1 5.6833 0.4692 -2.1188 27 1 8.1095 -1.3399 1.1633 28 1 8.7616 -3.0042 1.2652 29 1 10.9242 -3.3705 -0.2182 30 1 11.4250 -1.9015 -1.1107 31 1 10.2564 -1.7309 -3.2292 32 1 6.1875 -3.0136 0.3219 33 1 3.8078 -2.9842 0.8800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304271919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:37 Heat of formation + Delta-G solvation = -100.430304 kcal Electronic energy + Delta-G solvation = -18140.877140 eV Core-core repulsion = 15132.260390 eV Total energy + Delta-G solvation = -3008.616751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14353 -38.38876 -36.33873 -36.05837 -33.33348 -30.76311 -29.97529 -29.48071 -28.47194 -24.81451 -23.13003 -22.30830 -20.72128 -20.39126 -18.00056 -17.49767 -17.00059 -16.56880 -16.18999 -15.26606 -15.00585 -14.47084 -14.06635 -13.91819 -13.23657 -13.04773 -12.82976 -12.77385 -12.42608 -12.23094 -11.91102 -11.49246 -11.31168 -11.05466 -10.74836 -10.38937 -10.22470 -10.12387 -9.92281 -9.64963 -9.40525 -9.07829 -7.89975 -7.19721 -6.90215 -4.38645 2.57168 2.59860 3.13422 3.24278 3.35152 3.73643 3.79326 4.00813 4.08816 4.39478 4.49527 4.68608 4.88053 5.09571 5.27529 5.37951 5.38996 5.43071 5.56589 5.79989 5.84944 5.99076 6.38084 6.53290 6.64063 6.76289 6.96273 7.24664 7.36467 7.52422 7.55935 7.79888 7.91876 8.29339 8.40570 8.68836 8.82628 10.12711 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.043969 B = 0.005338 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.660583 B = 5244.632882 C = 5374.232103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.446 4.446 8 H 0.089 0.911 9 C 0.070 3.930 10 C -0.208 4.208 11 C -0.092 4.092 12 C -0.015 4.015 13 O -0.286 6.286 14 C 0.065 3.935 15 H 0.090 0.910 16 C 0.022 3.978 17 O -0.363 6.363 18 C 0.014 3.986 19 C 0.075 3.925 20 H 0.078 0.922 21 O -0.531 6.531 22 C -0.160 4.160 23 C -0.178 4.178 24 H 0.284 0.716 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.371 0.629 32 H 0.099 0.901 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -4.822 -1.582 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.165 1.165 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.068 3.932 10 C -0.227 4.227 11 C -0.111 4.111 12 C -0.058 4.058 13 O -0.201 6.201 14 C 0.006 3.994 15 H 0.108 0.892 16 C -0.055 4.055 17 O -0.282 6.282 18 C -0.064 4.064 19 C 0.015 3.985 20 H 0.096 0.904 21 O -0.334 6.334 22 C -0.179 4.179 23 C -0.198 4.198 24 H 0.095 0.905 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.217 0.783 32 H 0.117 0.883 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.565 -4.211 -1.279 16.175 hybrid contribution 0.552 0.078 -0.199 0.592 sum 16.117 -4.133 -1.478 16.704 Atomic orbital electron populations 1.69691 1.07966 1.30103 1.36243 1.26139 0.94789 1.01630 0.91055 0.86343 0.81312 0.79816 0.78750 1.19767 1.22034 1.16516 1.19398 0.91971 0.95733 1.40382 0.89272 1.17728 0.93481 0.91553 0.90477 1.20619 0.94246 1.03439 1.04428 1.19672 0.92744 0.97770 1.00919 1.18624 0.82266 1.00413 1.04500 1.86118 1.18139 1.42361 1.73509 1.23620 0.91623 0.91772 0.92356 0.89190 1.24123 0.84296 1.00492 0.96602 1.89178 1.28369 1.55552 1.55084 1.24205 0.96999 0.95816 0.89344 1.23383 0.93910 0.92553 0.88629 0.90447 1.86816 1.48707 1.54882 1.43043 1.20544 0.96673 0.98968 1.01699 1.20591 0.92305 1.02738 1.04165 0.90537 0.87665 0.87854 0.87562 0.91312 0.91568 0.88485 0.78301 0.88276 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.01 13.93 55.54 0.77 -21.24 16 2 C 0.08 2.17 5.45 -17.34 -0.09 2.07 16 3 Si 0.91 21.23 24.38 -169.99 -4.14 17.08 16 4 H -0.27 -6.14 6.73 56.52 0.38 -5.76 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.24 -5.79 6.59 56.52 0.37 -5.42 16 7 C -0.45 -12.15 9.59 -37.83 -0.36 -12.51 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.07 1.80 5.18 -106.80 -0.55 1.25 16 10 C -0.21 -5.15 6.93 -39.25 -0.27 -5.42 16 11 C -0.09 -2.14 9.92 -39.83 -0.40 -2.54 16 12 C -0.01 -0.32 6.69 -38.78 -0.26 -0.58 16 13 O -0.29 -5.79 8.96 -39.89 -0.36 -6.15 16 14 C 0.06 0.99 2.94 -25.16 -0.07 0.92 16 15 H 0.09 1.26 6.24 -51.93 -0.32 0.94 16 16 C 0.02 0.31 6.97 37.94 0.26 0.57 16 17 O -0.36 -5.38 11.65 -35.23 -0.41 -5.79 16 18 C 0.01 0.14 7.38 37.93 0.28 0.42 16 19 C 0.08 0.90 4.49 -25.16 -0.11 0.79 16 20 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 21 O -0.53 -7.15 12.49 -56.40 -0.70 -7.85 16 22 C -0.16 -3.34 8.80 -39.83 -0.35 -3.69 16 23 C -0.18 -4.12 9.74 -39.25 -0.38 -4.50 16 24 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 25 H 0.11 2.58 4.28 -52.49 -0.22 2.36 16 26 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.11 1.69 8.09 -51.93 -0.42 1.27 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.37 2.81 9.12 45.56 0.42 3.23 16 32 H 0.10 1.71 5.82 -52.49 -0.31 1.41 16 33 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 274.44 15.07 4.14 4.14 Total: -1.00 -31.68 274.44 -6.02 -37.70 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.00 Total: 5.33 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.31 Total: -23.22 kcal Atomic # 7 Polarization: -22.01 SS G_CDS: 0.77 Total: -21.24 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.47 Total: -19.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.68 -6.02 -37.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304271919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.732 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds