Wall clock time and date at job start Mon Mar 30 2020 21:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47561 * 275.32345 * 3 2 1 5 5 H 1.48492 * 109.47321 * 35.32489 * 3 2 1 6 6 H 1.48503 * 109.47021 * 155.32507 * 3 2 1 7 7 C 1.39890 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99747 * 345.14877 * 7 2 1 9 9 C 1.41213 * 120.00238 * 165.15264 * 7 2 1 10 10 C 1.40836 * 120.17687 * 331.60588 * 9 7 2 11 11 C 1.36444 * 119.81041 * 179.97438 * 10 9 7 12 12 C 1.39309 * 120.18415 * 0.02562 * 11 10 9 13 13 O 1.35674 * 119.81970 * 179.97438 * 12 11 10 14 14 C 1.42893 * 117.00272 * 185.32764 * 13 12 11 15 15 H 1.09001 * 110.56908 * 33.50990 * 14 13 12 16 16 C 1.54482 * 110.51071 * 270.83507 * 14 13 12 17 17 O 1.44433 * 104.80237 * 265.33570 * 16 14 13 18 18 C 1.44425 * 105.27343 * 319.48361 * 17 16 14 19 19 C 1.54480 * 104.80151 * 40.51305 * 18 17 16 20 20 H 1.09003 * 110.63114 * 217.31246 * 19 18 17 21 21 O 1.42901 * 110.51145 * 94.66775 * 19 18 17 22 22 C 1.39321 * 120.36717 * 0.27180 * 12 11 10 23 23 C 1.36440 * 120.17943 * 359.44214 * 22 12 11 24 24 H 0.97002 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.09733 * 359.95489 * 10 9 7 26 26 H 1.07996 * 119.90886 * 180.02562 * 11 10 9 27 27 H 1.09001 * 110.37340 * 24.15931 * 16 14 13 28 28 H 1.09000 * 110.37350 * 146.50205 * 16 14 13 29 29 H 1.09000 * 110.37533 * 281.68638 * 18 17 16 30 30 H 1.08998 * 110.37120 * 159.34101 * 18 17 16 31 31 H 0.96696 * 114.00605 * 65.34867 * 21 19 18 32 32 H 1.07990 * 119.90927 * 179.70590 * 22 12 11 33 33 H 1.08004 * 120.09275 * 180.26979 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3778 2.1115 -1.3940 5 1 1.5011 2.6175 0.8095 6 1 3.5921 1.4103 0.5845 7 6 2.0082 -1.2115 -0.0005 8 1 1.4953 -2.1312 0.2388 9 6 3.3850 -1.2318 -0.3139 10 6 3.9313 -0.2538 -1.1674 11 6 5.2627 -0.2802 -1.4648 12 6 6.0809 -1.2712 -0.9272 13 8 7.4037 -1.2908 -1.2282 14 6 8.1638 -2.3981 -0.7404 15 1 7.5552 -3.3022 -0.7226 16 6 8.7215 -2.0935 0.6676 17 8 10.0535 -1.5857 0.4350 18 6 10.5967 -2.4110 -0.6184 19 6 9.4257 -2.6119 -1.6059 20 1 9.4397 -3.6209 -2.0181 21 8 9.4835 -1.6431 -2.6548 22 6 5.5473 -2.2460 -0.0869 23 6 4.2191 -2.2304 0.2250 24 1 -0.4850 0.8401 -0.0004 25 1 3.2982 0.5148 -1.5857 26 1 5.6833 0.4692 -2.1188 27 1 8.1095 -1.3399 1.1633 28 1 8.7616 -3.0042 1.2652 29 1 10.9242 -3.3705 -0.2182 30 1 11.4250 -1.9015 -1.1107 31 1 10.2564 -1.7309 -3.2292 32 1 6.1875 -3.0136 0.3219 33 1 3.8078 -2.9842 0.8800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304271919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:36 Heat of formation + Delta-G solvation = -124.328217 kcal Electronic energy + Delta-G solvation = -18141.913431 eV Core-core repulsion = 15132.260390 eV Total energy + Delta-G solvation = -3009.653042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36844 -39.89496 -37.95641 -37.01698 -35.25272 -32.22737 -31.75739 -30.97245 -29.44195 -26.65073 -24.32398 -23.72597 -22.44738 -21.77398 -19.38786 -19.30447 -18.13407 -17.65492 -17.31118 -17.05441 -16.37219 -15.86467 -15.57957 -15.27600 -14.87446 -14.72035 -14.30709 -14.15957 -13.99484 -13.66855 -13.40273 -12.75829 -12.65667 -12.59050 -12.36104 -12.05483 -11.83657 -11.69157 -11.38847 -11.10781 -10.92210 -10.54670 -9.71372 -9.02155 -8.87111 -6.39582 0.73917 0.75469 1.25813 1.38625 1.47920 2.11554 2.40765 2.58412 2.87984 3.19257 3.43230 3.51369 3.76299 3.96560 4.09109 4.18227 4.23743 4.33126 4.47624 4.59195 4.62590 4.71037 4.77584 4.81890 4.93930 5.14983 5.39205 5.52686 5.68440 5.70962 5.86922 6.07997 6.30253 6.57122 6.79554 6.88034 7.00571 8.21719 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.043969 B = 0.005338 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.660583 B = 5244.632882 C = 5374.232103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.047 3.953 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.479 4.479 8 H 0.060 0.940 9 C 0.045 3.955 10 C -0.214 4.214 11 C -0.114 4.114 12 C 0.008 3.992 13 O -0.304 6.304 14 C 0.042 3.958 15 H 0.106 0.894 16 C 0.024 3.976 17 O -0.394 6.394 18 C 0.013 3.987 19 C 0.076 3.924 20 H 0.114 0.886 21 O -0.565 6.565 22 C -0.155 4.155 23 C -0.179 4.179 24 H 0.292 0.708 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.394 0.606 32 H 0.142 0.858 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.454 -5.725 -1.790 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.166 4.166 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.510 4.510 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.233 4.233 11 C -0.133 4.133 12 C -0.036 4.036 13 O -0.218 6.218 14 C -0.015 4.015 15 H 0.124 0.876 16 C -0.053 4.053 17 O -0.313 6.313 18 C -0.063 4.063 19 C 0.017 3.983 20 H 0.132 0.868 21 O -0.373 6.373 22 C -0.173 4.173 23 C -0.199 4.199 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.244 0.756 32 H 0.159 0.841 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.841 -5.128 -1.503 19.584 hybrid contribution -0.125 0.209 -0.189 0.308 sum 18.716 -4.919 -1.692 19.425 Atomic orbital electron populations 1.69717 1.08898 1.31185 1.38491 1.26720 0.95355 1.03865 0.90705 0.85570 0.79593 0.77070 0.79217 1.18757 1.20568 1.17748 1.19381 0.93160 0.95219 1.43192 0.92189 1.17881 0.93223 0.93099 0.91527 1.20667 0.95015 1.03280 1.04378 1.19894 0.92546 0.99007 1.01838 1.18817 0.83310 0.99089 1.02413 1.86116 1.17018 1.44963 1.73747 1.24204 0.92617 0.90584 0.94094 0.87638 1.24114 0.83977 1.01108 0.96101 1.89144 1.28493 1.57206 1.56504 1.24474 0.96662 0.97050 0.88138 1.23546 0.92392 0.93914 0.88456 0.86817 1.86734 1.50650 1.55884 1.44005 1.20866 0.96134 0.99510 1.00815 1.20850 0.93155 1.02094 1.03772 0.89749 0.88024 0.86565 0.90101 0.87807 0.88242 0.87019 0.75570 0.84095 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.86 13.93 21.82 0.30 -47.56 16 2 C 0.05 2.57 5.45 85.23 0.46 3.04 16 3 Si 0.96 44.39 24.38 68.60 1.67 46.07 16 4 H -0.26 -11.55 6.73 99.48 0.67 -10.88 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -12.05 6.59 99.48 0.66 -11.39 16 7 C -0.48 -27.20 9.59 23.40 0.22 -26.97 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 C 0.05 2.33 5.18 -21.28 -0.11 2.22 16 10 C -0.21 -10.60 6.93 22.49 0.16 -10.44 16 11 C -0.11 -5.19 9.92 22.11 0.22 -4.97 16 12 C 0.01 0.33 6.69 22.79 0.15 0.48 16 13 O -0.30 -11.48 8.96 -69.67 -0.62 -12.10 16 14 C 0.04 1.13 2.94 31.61 0.09 1.23 16 15 H 0.11 2.46 6.24 -2.39 -0.01 2.45 16 16 C 0.02 0.59 6.97 72.49 0.51 1.10 16 17 O -0.39 -10.43 11.65 -148.98 -1.74 -12.17 16 18 C 0.01 0.22 7.38 72.49 0.53 0.75 16 19 C 0.08 1.49 4.49 31.61 0.14 1.63 16 20 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 21 O -0.56 -13.39 12.49 -128.74 -1.61 -15.00 16 22 C -0.15 -6.06 8.80 22.11 0.19 -5.86 16 23 C -0.18 -8.11 9.74 22.48 0.22 -7.90 16 24 H 0.29 14.75 8.30 -92.71 -0.77 13.98 16 25 H 0.10 5.01 4.28 -2.91 -0.01 5.00 16 26 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 27 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.39 4.68 9.12 -74.06 -0.68 4.00 16 32 H 0.14 4.27 5.82 -2.92 -0.02 4.26 16 33 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -70.28 274.44 1.18 -69.10 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.38 Total: 17.35 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 2.79 Total: -45.68 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.30 Total: -47.56 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -3.97 Total: -39.27 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.07 kcal Total: -70.28 1.18 -69.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304271919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.233 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds