Wall clock time and date at job start Mon Mar 30 2020 21:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86798 * 120.00165 * 2 1 4 4 H 1.48498 * 109.47318 * 239.72118 * 3 2 1 5 5 H 1.48506 * 109.47135 * 359.71615 * 3 2 1 6 6 H 1.48496 * 109.47359 * 119.71699 * 3 2 1 7 7 C 1.39891 * 120.00022 * 179.71654 * 2 1 3 8 8 H 1.08002 * 120.00142 * 202.90319 * 7 2 1 9 9 C 1.41216 * 120.00206 * 22.90060 * 7 2 1 10 10 C 1.40827 * 120.18313 * 215.49413 * 9 7 2 11 11 C 1.36429 * 119.81382 * 179.67108 * 10 9 7 12 12 C 1.39322 * 120.18320 * 0.62506 * 11 10 9 13 13 O 1.35675 * 119.81491 * 179.69502 * 12 11 10 14 14 C 1.42903 * 116.99416 * 175.71008 * 13 12 11 15 15 H 1.08999 * 110.43664 * 322.93851 * 14 13 12 16 16 C 1.54102 * 110.48441 * 85.48205 * 14 13 12 17 17 O 1.43745 * 107.29062 * 116.64543 * 16 14 13 18 18 C 1.44375 * 106.97986 * 26.51199 * 17 16 14 19 19 C 1.54810 * 110.48685 * 200.24745 * 14 13 12 20 20 H 1.09005 * 110.90614 * 338.64064 * 19 14 13 21 21 O 1.42898 * 110.90581 * 102.24736 * 19 14 13 22 22 C 1.39312 * 120.36145 * 359.66598 * 12 11 10 23 23 C 1.36438 * 120.18541 * 0.02562 * 22 12 11 24 24 H 0.96996 * 120.00017 * 187.31900 * 1 2 3 25 25 H 1.08008 * 120.09276 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.91398 * 180.29560 * 11 10 9 27 27 H 1.09002 * 109.87616 * 236.06429 * 16 14 13 28 28 H 1.08999 * 109.88199 * 357.22096 * 16 14 13 29 29 H 1.09002 * 110.61697 * 78.43696 * 18 17 16 30 30 H 1.08995 * 110.62189 * 201.28250 * 18 17 16 31 31 H 0.96704 * 113.99676 * 179.97438 * 21 19 14 32 32 H 1.07993 * 119.90355 * 180.02562 * 22 12 11 33 33 H 1.07995 * 120.08936 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.1017 1.6934 -1.2090 5 1 1.2778 2.7465 -0.0069 6 1 3.0914 1.6994 1.2159 7 6 2.0082 -1.2115 0.0060 8 1 3.0244 -1.2466 0.3702 9 6 1.3857 -2.3886 -0.4641 10 6 1.6599 -3.6272 0.1474 11 6 1.0491 -4.7587 -0.3085 12 6 0.1662 -4.6932 -1.3843 13 8 -0.4324 -5.8241 -1.8355 14 6 -1.3973 -5.6752 -2.8790 15 1 -1.9755 -4.7625 -2.7352 16 6 -0.7053 -5.6642 -4.2558 17 8 -1.1755 -6.8138 -4.9795 18 6 -2.4839 -7.1332 -4.4595 19 6 -2.3311 -6.9088 -2.9335 20 1 -1.8641 -7.7715 -2.4583 21 8 -3.5944 -6.6190 -2.3316 22 6 -0.1059 -3.4729 -1.9987 23 6 0.4919 -2.3311 -1.5509 24 1 -0.4850 -0.8332 0.1070 25 1 2.3481 -3.6805 0.9782 26 1 1.2545 -5.7087 0.1623 27 1 -0.9677 -4.7540 -4.7952 28 1 0.3755 -5.7233 -4.1280 29 1 -3.2358 -6.4611 -4.8729 30 1 -2.7392 -8.1710 -4.6736 31 1 -4.2143 -7.3611 -2.3418 32 1 -0.7918 -3.4306 -2.8317 33 1 0.2802 -1.3859 -2.0286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304271920.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:39 Heat of formation + Delta-G solvation = -114.626494 kcal Electronic energy + Delta-G solvation = -18014.526270 eV Core-core repulsion = 15005.293926 eV Total energy + Delta-G solvation = -3009.232344 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15755 -38.40589 -36.44806 -36.34318 -33.44858 -30.48877 -29.83967 -28.79376 -28.43479 -24.80155 -23.01167 -22.15220 -21.04480 -20.22498 -18.26683 -17.88032 -17.01329 -16.42310 -15.79327 -15.31429 -14.58627 -14.42188 -14.06279 -13.91783 -13.70594 -13.10529 -12.96806 -12.58009 -12.42607 -12.21651 -11.94168 -11.37227 -11.14072 -11.02459 -10.74793 -10.44415 -10.39888 -10.14153 -9.73106 -9.52902 -9.50762 -8.91979 -7.93144 -7.25044 -7.01744 -4.36338 2.65635 2.70925 3.19060 3.25452 3.39011 3.46225 3.65741 4.07948 4.33301 4.50331 4.57541 4.67972 4.90882 5.07734 5.30743 5.40495 5.41354 5.57342 5.63589 5.83347 5.91334 6.03833 6.47600 6.60827 6.70127 6.88031 7.15263 7.31824 7.39675 7.60234 7.72261 7.79012 8.03632 8.19212 8.36245 8.74207 8.92039 10.16562 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.004903 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.022270 B = 5709.433113 C = 5825.656283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.189 4.189 11 C -0.103 4.103 12 C -0.014 4.014 13 O -0.312 6.312 14 C 0.065 3.935 15 H 0.093 0.907 16 C 0.029 3.971 17 O -0.369 6.369 18 C 0.019 3.981 19 C 0.075 3.925 20 H 0.087 0.913 21 O -0.551 6.551 22 C -0.159 4.159 23 C -0.173 4.173 24 H 0.294 0.706 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.381 0.619 32 H 0.097 0.903 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -9.433 -6.003 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.888 3.112 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.208 4.208 11 C -0.122 4.122 12 C -0.057 4.057 13 O -0.227 6.227 14 C 0.007 3.993 15 H 0.111 0.889 16 C -0.048 4.048 17 O -0.288 6.288 18 C -0.058 4.058 19 C 0.015 3.985 20 H 0.105 0.895 21 O -0.356 6.356 22 C -0.178 4.178 23 C -0.192 4.192 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.229 0.771 32 H 0.115 0.885 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.563 -7.483 -6.088 10.671 hybrid contribution -0.321 -1.942 0.036 1.968 sum -4.884 -9.424 -6.052 12.219 Atomic orbital electron populations 1.70460 1.08044 1.33796 1.31254 1.26888 0.95702 1.03969 0.91465 0.83651 0.75588 0.74093 0.77826 1.20181 1.20012 1.20271 1.20352 1.01871 0.93589 1.40834 0.90776 1.17684 0.91400 0.92976 0.90249 1.20729 1.05459 0.92767 1.01874 1.19713 0.98479 0.98040 0.95954 1.18522 1.02371 0.84390 1.00436 1.85888 1.53637 1.31481 1.51737 1.23254 0.89512 0.98927 0.87634 0.88918 1.23805 1.01203 0.89046 0.90769 1.88895 1.31640 1.47956 1.60332 1.24187 0.86929 1.02055 0.92649 1.23292 0.84818 0.97828 0.92554 0.89500 1.86564 1.25009 1.42164 1.81900 1.20559 1.02811 0.93013 1.01396 1.20771 1.03425 0.96466 0.98544 0.89340 0.87842 0.88151 0.91175 0.88060 0.91105 0.88322 0.77110 0.88471 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.99 12.66 55.54 0.70 -21.29 16 2 C 0.04 1.01 4.94 -17.34 -0.09 0.93 16 3 Si 1.06 21.88 29.99 -169.99 -5.10 16.78 16 4 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.54 -14.34 8.94 -37.83 -0.34 -14.68 16 8 H 0.07 1.93 7.94 -52.49 -0.42 1.51 16 9 C 0.08 2.10 5.05 -106.81 -0.54 1.56 16 10 C -0.19 -4.61 9.74 -39.26 -0.38 -4.99 16 11 C -0.10 -2.36 9.92 -39.83 -0.40 -2.75 16 12 C -0.01 -0.32 6.65 -38.78 -0.26 -0.58 16 13 O -0.31 -6.29 9.75 -18.73 -0.18 -6.47 16 14 C 0.06 1.08 2.67 -25.20 -0.07 1.01 16 15 H 0.09 1.65 6.36 -51.93 -0.33 1.31 16 16 C 0.03 0.44 6.79 37.73 0.26 0.69 16 17 O -0.37 -5.34 11.52 -35.23 -0.41 -5.75 16 18 C 0.02 0.21 7.45 38.21 0.28 0.50 16 19 C 0.07 0.98 4.26 -24.72 -0.11 0.88 16 20 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 21 O -0.55 -6.85 13.42 -35.23 -0.47 -7.33 16 22 C -0.16 -3.63 8.71 -39.83 -0.35 -3.97 16 23 C -0.17 -4.37 8.05 -39.25 -0.32 -4.69 16 24 H 0.29 8.21 7.01 -40.82 -0.29 7.93 16 25 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 26 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 27 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 28 H 0.10 1.64 7.97 -51.93 -0.41 1.23 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.38 2.56 9.12 45.56 0.42 2.97 16 32 H 0.10 1.97 5.72 -52.49 -0.30 1.67 16 33 H 0.10 2.73 7.19 -52.49 -0.38 2.35 16 LS Contribution 281.76 15.07 4.25 4.25 Total: -1.00 -30.18 281.76 -6.54 -36.72 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.04 Total: 9.19 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -2.29 Total: -26.11 kcal Atomic # 7 Polarization: -21.99 SS G_CDS: 0.70 Total: -21.29 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.06 Total: -19.55 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.10 Total: 16.78 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.18 -6.54 -36.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304271920.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.907 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds