Wall clock time and date at job start Mon Mar 30 2020 21:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00460 * 2 1 4 4 H 1.48498 * 109.47030 * 270.00050 * 3 2 1 5 5 H 1.48503 * 109.46710 * 29.99704 * 3 2 1 6 6 H 1.48500 * 109.47378 * 149.99812 * 3 2 1 7 7 C 1.37881 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00384 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99469 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46846 * 180.02562 * 9 7 2 11 11 C 1.35899 * 116.99769 * 180.02562 * 10 9 7 12 12 C 1.38749 * 120.05764 * 0.24762 * 11 10 9 13 13 C 1.38124 * 119.94616 * 180.32030 * 12 11 10 14 14 C 1.38294 * 120.04986 * 359.68533 * 13 12 11 15 15 C 1.38236 * 120.11395 * 0.02562 * 14 13 12 16 16 C 1.38159 * 120.05848 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.03133 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47212 * 265.00010 * 17 16 15 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.20826 * 119.99685 * 0.02562 * 19 18 17 21 21 O 1.34232 * 120.00079 * 179.97438 * 19 18 17 22 22 H 0.97008 * 119.99506 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47433 * 60.00157 * 9 7 2 24 24 H 1.09006 * 109.47097 * 300.00076 * 9 7 2 25 25 H 1.08002 * 120.03011 * 0.02562 * 12 11 10 26 26 H 1.07994 * 119.97736 * 179.70050 * 13 12 11 27 27 H 1.08004 * 119.94098 * 180.02562 * 14 13 12 28 28 H 1.08003 * 119.97210 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.47060 * 25.00065 * 17 16 15 30 30 H 1.09001 * 109.47380 * 145.00153 * 17 16 15 31 31 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 32 32 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 33 33 H 0.96708 * 116.99537 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 8 2.1795 -3.5853 -0.0015 11 6 1.6600 -4.8411 -0.0030 12 6 0.2847 -5.0242 -0.0098 13 6 -0.2409 -6.3015 -0.0047 14 6 0.6026 -7.3974 0.0008 15 6 1.9732 -7.2177 0.0016 16 6 2.5039 -5.9421 -0.0025 17 6 3.9982 -5.7468 -0.0011 18 6 4.4855 -5.5506 1.4359 19 6 5.9798 -5.3559 1.4375 20 8 6.5922 -5.3720 0.3960 21 8 6.6304 -5.1637 2.5958 22 1 -0.4850 0.8402 -0.0004 23 1 0.6246 -2.5563 -0.8920 24 1 0.6239 -2.5574 0.8880 25 1 -0.3745 -4.1687 -0.0144 26 1 -1.3113 -6.4446 -0.0051 27 1 0.1898 -8.3954 0.0044 28 1 2.6299 -8.0752 0.0054 29 1 4.4798 -6.6249 -0.4313 30 1 4.2503 -4.8672 -0.5935 31 1 4.0039 -4.6725 1.8662 32 1 4.2334 -6.4300 2.0284 33 1 7.5887 -5.0432 2.5463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309542389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:51 Heat of formation + Delta-G solvation = -146.115661 kcal Electronic energy + Delta-G solvation = -17677.667585 eV Core-core repulsion = 14667.069769 eV Total energy + Delta-G solvation = -3010.597816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37407 -40.84991 -38.25775 -37.15866 -35.20606 -34.95002 -31.17143 -30.90735 -29.36264 -26.20277 -25.41491 -22.69298 -22.66815 -21.49131 -19.20772 -18.88155 -18.42247 -17.58855 -17.28971 -16.86177 -16.44088 -16.35809 -16.08260 -15.21435 -14.76166 -14.48850 -14.25770 -13.99011 -13.61729 -13.50603 -13.06541 -13.00997 -12.75342 -12.55701 -12.45316 -12.27081 -11.97585 -11.89232 -11.75639 -11.60919 -11.30013 -10.73181 -9.74582 -8.94505 -8.41369 -6.55235 0.41433 0.61059 1.22317 1.36818 1.39248 1.51166 2.18257 2.25716 2.77599 2.89684 2.93906 3.86427 3.92911 3.99848 4.19043 4.24124 4.40502 4.53875 4.57524 4.70718 4.72452 4.85184 4.95779 4.97269 5.08476 5.26127 5.45360 5.54774 5.62425 5.63652 5.65476 5.84102 6.04184 6.50566 6.81883 7.01735 7.17167 8.70877 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.007130 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.363499 B = 3926.046769 C = 5630.159870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.064 0.936 9 C 0.215 3.785 10 O -0.332 6.332 11 C 0.110 3.890 12 C -0.233 4.233 13 C -0.083 4.083 14 C -0.159 4.159 15 C -0.071 4.071 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.104 4.104 19 C 0.488 3.512 20 O -0.552 6.552 21 O -0.513 6.513 22 H 0.274 0.726 23 H -0.003 1.003 24 H 0.001 0.999 25 H 0.105 0.895 26 H 0.143 0.857 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -14.802 3.967 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.141 3.859 10 O -0.245 6.245 11 C 0.064 3.936 12 C -0.252 4.252 13 C -0.101 4.101 14 C -0.177 4.177 15 C -0.089 4.089 16 C -0.138 4.138 17 C -0.087 4.087 18 C -0.142 4.142 19 C 0.333 3.667 20 O -0.443 6.443 21 O -0.326 6.326 22 H 0.083 0.917 23 H 0.014 0.986 24 H 0.019 0.981 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.177 0.823 28 H 0.181 0.819 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.154 0.846 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.494 -14.663 3.725 16.096 hybrid contribution 0.310 1.498 -0.190 1.542 sum 5.803 -13.165 3.535 14.815 Atomic orbital electron populations 1.70051 1.07690 1.28995 1.49586 1.25917 0.95978 1.03241 0.93512 0.85177 0.78412 0.76897 0.78940 1.19288 1.19538 1.18851 1.21299 0.94224 0.90290 1.53485 0.91784 1.20104 0.88373 0.82734 0.94653 1.86036 1.38323 1.12763 1.87413 1.19561 0.92703 0.85567 0.95782 1.21442 0.94107 0.99614 1.10065 1.21236 1.01135 0.90998 0.96728 1.21370 0.93111 0.99523 1.03677 1.21237 0.96030 0.95093 0.96512 1.19305 0.94695 0.91409 1.08415 1.20058 0.90448 1.03123 0.95049 1.21346 0.86535 1.06471 0.99800 1.23657 0.91848 0.70607 0.80595 1.90700 1.70243 1.48706 1.34645 1.84519 1.29599 1.83303 1.35223 0.91723 0.98559 0.98124 0.87726 0.83959 0.82344 0.81914 0.88589 0.93156 0.88739 0.84604 0.71217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.79 13.29 21.45 0.28 -54.50 16 2 C 0.01 0.75 5.46 84.66 0.46 1.21 16 3 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.56 -32.91 9.43 25.60 0.24 -32.67 16 8 H 0.06 3.76 7.81 -2.91 -0.02 3.74 16 9 C 0.21 12.07 4.49 71.24 0.32 12.39 16 10 O -0.33 -16.58 9.26 -92.42 -0.86 -17.44 16 11 C 0.11 4.54 6.66 22.51 0.15 4.69 16 12 C -0.23 -9.04 9.04 22.36 0.20 -8.84 16 13 C -0.08 -2.39 10.04 22.26 0.22 -2.17 16 14 C -0.16 -3.67 10.04 22.28 0.22 -3.45 16 15 C -0.07 -1.71 9.68 22.25 0.22 -1.49 16 16 C -0.14 -4.42 5.15 -19.77 -0.10 -4.52 16 17 C -0.05 -1.49 4.35 29.85 0.13 -1.36 16 18 C -0.10 -2.75 5.79 29.85 0.17 -2.57 16 19 C 0.49 13.14 8.33 71.23 0.59 13.73 16 20 O -0.55 -18.29 16.74 21.97 0.37 -17.93 16 21 O -0.51 -10.61 13.42 -51.44 -0.69 -11.30 16 22 H 0.27 14.99 8.31 -92.70 -0.77 14.21 16 23 H 0.00 -0.20 7.65 -2.39 -0.02 -0.22 16 24 H 0.00 0.06 7.68 -2.38 -0.02 0.04 16 25 H 0.10 4.53 6.30 -2.91 -0.02 4.52 16 26 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.10 2.42 8.01 -2.39 -0.02 2.40 16 30 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 31 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.43 4.96 9.10 -74.05 -0.67 4.28 16 Total: -1.00 -72.47 295.01 4.42 -68.05 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.45 Total: 12.12 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 2.83 Total: -25.05 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.28 Total: -54.50 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -1.18 Total: -46.67 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.47 4.42 -68.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309542389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.066 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds