Wall clock time and date at job start Mon Mar 30 2020 21:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86796 * 120.00341 * 2 1 4 4 H 1.48504 * 109.46721 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.46916 * 29.99804 * 3 2 1 6 6 H 1.48500 * 109.47365 * 150.00086 * 3 2 1 7 7 C 1.40362 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00067 * 166.54127 * 7 2 1 9 9 C 1.40175 * 119.99790 * 346.53998 * 7 2 1 10 10 C 1.39065 * 119.74354 * 154.63156 * 9 7 2 11 11 C 1.42037 * 118.74420 * 180.02562 * 10 9 7 12 12 N 1.32204 * 120.83052 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99687 * 173.68781 * 12 11 10 14 14 H 1.08998 * 108.85035 * 352.40425 * 13 12 11 15 15 C 1.52943 * 108.88988 * 110.84822 * 13 12 11 16 16 C 1.55156 * 108.95870 * 90.69199 * 15 13 12 17 17 S 1.83984 * 100.91102 * 41.44032 * 16 15 13 18 18 C 1.53717 * 108.88667 * 233.82698 * 13 12 11 19 19 C 1.46917 * 118.33241 * 359.97438 * 11 10 9 20 20 C 1.34372 * 119.37006 * 0.02562 * 19 11 10 21 21 N 1.36429 * 121.21884 * 359.97438 * 20 19 11 22 22 H 0.97007 * 119.08795 * 179.97438 * 21 20 19 23 23 H 0.96998 * 119.99452 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.62841 * 359.97376 * 10 9 7 25 25 H 1.08992 * 109.60399 * 210.62036 * 15 13 12 26 26 H 1.09000 * 109.60344 * 330.76238 * 15 13 12 27 27 H 1.08999 * 111.13080 * 283.52738 * 16 15 13 28 28 H 1.09004 * 111.16414 * 159.37048 * 16 15 13 29 29 H 1.08998 * 110.33840 * 0.90407 * 18 13 12 30 30 H 1.09002 * 110.33622 * 123.15663 * 18 13 12 31 31 H 1.07993 * 120.31079 * 179.97438 * 19 11 10 32 32 H 1.07999 * 119.38664 * 179.72202 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6176 0.0000 4 1 2.4874 2.0462 -1.4001 5 1 1.4374 2.6526 0.7000 6 1 3.5375 1.4401 0.7000 7 6 2.0077 -1.2156 0.0005 8 1 3.0654 -1.2285 -0.2171 9 6 1.3356 -2.4127 0.2837 10 6 1.8324 -3.6154 -0.2068 11 6 1.1343 -4.8156 0.0925 12 7 1.5701 -5.9819 -0.3522 13 6 0.9180 -7.2205 0.0798 14 1 0.1949 -6.9842 0.8604 15 6 0.1757 -7.8304 -1.1103 16 6 1.1283 -8.8039 -1.8534 17 16 1.9469 -9.6411 -0.4342 18 6 1.9819 -8.1678 0.6572 19 6 -0.0836 -4.7286 0.9095 20 6 -0.4998 -3.5279 1.3464 21 7 0.1881 -2.3887 1.0456 22 1 -0.1403 -1.5382 1.3769 23 1 -0.4849 0.8401 0.0004 24 1 2.7316 -3.6364 -0.8047 25 1 -0.6994 -8.3747 -0.7556 26 1 -0.1400 -7.0383 -1.7893 27 1 1.8525 -8.2592 -2.4591 28 1 0.5686 -9.5158 -2.4601 29 1 2.9646 -7.6972 0.6271 30 1 1.7258 -8.4472 1.6793 31 1 -0.6396 -5.6210 1.1559 32 1 -1.3975 -3.4631 1.9432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380003624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:55 Heat of formation + Delta-G solvation = 17.528886 kcal Electronic energy + Delta-G solvation = -15587.770943 eV Core-core repulsion = 13059.314909 eV Total energy + Delta-G solvation = -2528.456034 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33891 -37.93537 -35.75095 -34.13553 -32.35636 -30.75169 -29.23307 -27.81121 -25.47476 -23.32222 -22.80915 -20.67635 -19.74471 -18.37652 -17.58608 -17.20387 -16.87215 -16.45232 -15.55458 -15.32953 -14.83273 -14.59309 -14.38413 -14.12067 -13.55726 -13.14333 -13.06883 -12.93376 -12.83452 -12.77985 -12.45239 -12.22884 -12.08810 -11.81957 -11.36793 -11.14500 -10.92701 -9.97696 -9.26777 -8.96562 -8.72784 -7.76012 -6.66106 0.94162 0.97393 1.04253 1.38986 1.42629 1.54382 1.62759 2.16151 2.55736 2.92967 3.47631 3.66278 3.89099 4.05348 4.13690 4.24884 4.32075 4.52942 4.57736 4.68845 4.85193 4.92834 4.95666 5.03935 5.10084 5.19576 5.24903 5.64212 5.82447 5.98841 6.09314 6.44191 6.52321 6.99994 7.18188 7.93026 8.05048 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.049501 B = 0.004548 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.511132 B = 6155.230496 C = 6384.756498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.051 3.949 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.095 0.905 9 C 0.322 3.678 10 C -0.397 4.397 11 C 0.269 3.731 12 N -0.694 5.694 13 C 0.075 3.925 14 H 0.050 0.950 15 C -0.108 4.108 16 C -0.043 4.043 17 S -0.332 6.332 18 C -0.039 4.039 19 C -0.321 4.321 20 C 0.139 3.861 21 N -0.600 5.600 22 H 0.418 0.582 23 H 0.306 0.694 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -1.901 3.005 5.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.167 4.167 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.113 0.887 9 C 0.213 3.787 10 C -0.427 4.427 11 C 0.106 3.894 12 N -0.422 5.422 13 C -0.039 4.039 14 H 0.068 0.932 15 C -0.147 4.147 16 C -0.191 4.191 17 S -0.107 6.107 18 C -0.188 4.188 19 C -0.351 4.351 20 C 0.010 3.990 21 N -0.211 5.211 22 H 0.259 0.741 23 H 0.118 0.882 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.534 -3.441 2.621 5.585 hybrid contribution -0.677 2.041 0.218 2.162 sum -4.210 -1.400 2.839 5.268 Atomic orbital electron populations 1.69279 1.08645 1.32598 1.34862 1.26879 0.95722 1.04664 0.89443 0.84983 0.79089 0.74898 0.79615 1.19092 1.18094 1.18328 1.19725 0.98200 0.90421 1.44464 0.88743 1.17748 0.82344 0.94149 0.84471 1.20171 1.09233 0.90401 1.22848 1.20417 0.89146 0.92763 0.87052 1.73444 1.36989 0.96264 1.35525 1.21851 0.93321 0.93202 0.95482 0.93203 1.22406 0.98097 0.97749 0.96452 1.24230 0.99514 0.99250 0.96124 1.87293 1.82815 1.21686 1.18953 1.23958 1.02354 0.92944 0.99528 1.22365 1.03120 0.97472 1.12108 1.21952 0.95675 0.85949 0.95428 1.42132 1.23783 1.09831 1.45335 0.74053 0.88249 0.89653 0.89640 0.92050 0.90521 0.85733 0.91076 0.88203 0.84623 0.79927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -34.02 11.09 21.90 0.24 -33.77 16 2 C 0.05 2.09 5.23 85.39 0.45 2.54 16 3 Si 0.99 31.77 29.58 68.60 2.03 33.80 16 4 H -0.27 -8.59 7.11 99.48 0.71 -7.88 16 5 H -0.26 -7.51 7.11 99.48 0.71 -6.81 16 6 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 7 C -0.50 -23.43 9.04 23.26 0.21 -23.22 16 8 H 0.09 4.47 7.89 -2.91 -0.02 4.44 16 9 C 0.32 15.70 6.34 38.88 0.25 15.95 16 10 C -0.40 -20.74 9.83 23.41 0.23 -20.51 16 11 C 0.27 13.03 6.80 42.30 0.29 13.32 16 12 N -0.69 -32.87 9.93 -313.55 -3.11 -35.98 16 13 C 0.07 2.86 3.15 45.21 0.14 3.00 16 14 H 0.05 1.86 5.30 -2.39 -0.01 1.85 16 15 C -0.11 -3.57 6.00 31.31 0.19 -3.39 16 16 C -0.04 -1.33 7.52 72.72 0.55 -0.78 16 17 S -0.33 -11.00 23.23 -56.49 -1.31 -12.31 16 18 C -0.04 -1.41 7.14 72.22 0.52 -0.89 16 19 C -0.32 -12.92 9.32 23.66 0.22 -12.69 16 20 C 0.14 5.01 11.15 83.09 0.93 5.93 16 21 N -0.60 -24.90 4.86 -188.19 -0.92 -25.81 16 22 H 0.42 16.33 6.41 -92.70 -0.59 15.73 16 23 H 0.31 11.07 8.29 -92.71 -0.77 10.30 16 24 H 0.09 4.74 8.06 -2.91 -0.02 4.72 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 2.24 8.02 -2.39 -0.02 2.22 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 28 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 29 H 0.07 2.86 7.88 -2.39 -0.02 2.85 16 30 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.14 4.81 6.02 -2.91 -0.02 4.79 16 32 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -56.11 280.02 1.44 -54.67 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: 0.54 Total: 40.15 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.96 Total: -20.75 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -3.79 Total: -95.57 kcal Atomic # 14 Polarization: 31.77 SS G_CDS: 2.03 Total: 33.80 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.31 Total: -12.31 kcal Total: -56.11 1.44 -54.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380003624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.200 kcal (2) G-P(sol) polarization free energy of solvation -56.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds