Wall clock time and date at job start Mon Mar 30 2020 21:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47117 * 174.99511 * 12 9 7 14 14 N 1.30979 * 126.43073 * 89.99750 * 13 12 9 15 15 C 1.35226 * 105.57789 * 179.97438 * 14 13 12 16 16 C 1.48366 * 126.41659 * 179.97438 * 15 14 13 17 17 C 1.40898 * 126.24201 * 0.03063 * 16 15 14 18 18 N 1.30638 * 108.06844 * 179.97438 * 17 16 15 19 19 N 1.40004 * 108.53962 * 0.02562 * 18 17 16 20 20 H 0.97001 * 125.86811 * 180.02562 * 19 18 17 21 21 C 1.34665 * 108.25975 * 359.73239 * 19 18 17 22 22 N 1.30810 * 107.16293 * 0.02562 * 15 14 13 23 23 O 1.21284 * 110.08621 * 359.72480 * 22 15 14 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 26 26 H 1.08999 * 109.47029 * 294.99679 * 12 9 7 27 27 H 1.09005 * 109.47152 * 54.99424 * 12 9 7 28 28 H 1.08002 * 125.96951 * 359.97438 * 17 16 15 29 29 H 1.07996 * 126.19581 * 180.26827 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0214 -2.6367 -0.0014 13 6 5.5234 -2.6384 -0.1247 14 7 6.3848 -2.6098 0.8615 15 6 7.6049 -2.6253 0.2785 16 6 8.9144 -2.6040 0.9755 17 6 9.1156 -2.5644 2.3695 18 7 10.4027 -2.5570 2.5931 19 7 11.0686 -2.5907 1.3620 20 1 12.0303 -2.5937 1.2360 21 6 10.1444 -2.6248 0.3832 22 7 7.4141 -2.6615 -1.0151 23 8 6.2265 -2.6746 -1.2608 24 1 -0.4850 0.8401 0.0004 25 1 3.7018 -0.9253 1.9982 26 1 3.7327 -3.1250 0.9294 27 1 3.5870 -3.1748 -0.8439 28 1 8.3410 -2.5437 3.1218 29 1 10.3405 -2.6598 -0.6783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381230042.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:00 Heat of formation + Delta-G solvation = 90.501730 kcal Electronic energy + Delta-G solvation = -17419.932385 eV Core-core repulsion = 14348.347476 eV Total energy + Delta-G solvation = -3071.584909 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.07208 -41.38097 -36.72371 -35.42238 -33.06617 -32.35902 -31.79730 -30.42794 -29.31583 -26.14220 -24.15947 -23.11146 -21.70134 -21.11741 -20.02418 -18.58963 -17.66452 -17.51004 -16.47786 -15.02549 -14.91789 -14.75616 -14.60698 -14.54099 -14.38899 -13.49186 -12.98515 -12.87037 -12.39232 -11.79888 -11.64409 -11.34446 -11.16872 -10.95020 -10.74159 -10.61039 -10.26595 -9.98141 -9.79085 -9.31159 -8.73635 -8.71304 -8.49468 -6.22148 -4.36364 1.20796 1.69107 2.17277 2.51710 3.20830 3.26928 3.41674 3.45613 3.58218 3.84238 4.26406 4.43440 4.64106 4.74176 5.07553 5.18800 5.43075 5.58946 5.71147 5.82335 5.94867 6.06923 6.21204 6.35099 6.45452 6.87041 7.11501 7.30485 7.39734 8.16379 8.53996 8.70170 8.90297 9.39759 10.87428 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.039283 B = 0.005036 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.604134 B = 5558.885570 C = 5813.886238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.304 1.304 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.199 3.801 10 H 0.066 0.934 11 O -0.581 6.581 12 C -0.051 4.051 13 C 0.216 3.784 14 N -0.479 5.479 15 C 0.247 3.753 16 C -0.165 4.165 17 C 0.100 3.900 18 N -0.296 5.296 19 N -0.471 5.471 20 H 0.444 0.556 21 C 0.102 3.898 22 N -0.402 5.402 23 O 0.066 5.934 24 H 0.267 0.733 25 H 0.366 0.634 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.196 0.804 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.455 -6.073 0.626 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.120 4.120 3 Si 0.742 3.258 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.232 1.232 7 C -0.602 4.602 8 H 0.098 0.902 9 C 0.140 3.860 10 H 0.084 0.916 11 O -0.387 6.387 12 C -0.091 4.091 13 C -0.004 4.004 14 N -0.212 5.212 15 C -0.024 4.024 16 C -0.179 4.179 17 C -0.089 4.089 18 N -0.117 5.117 19 N -0.178 5.178 20 H 0.289 0.711 21 C -0.050 4.050 22 N -0.114 5.114 23 O 0.010 5.990 24 H 0.077 0.923 25 H 0.213 0.787 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.213 0.787 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 19.223 -5.572 0.909 20.035 hybrid contribution -0.276 0.483 -0.446 0.713 sum 18.947 -5.089 0.463 19.624 Atomic orbital electron populations 1.69937 1.06595 1.27706 1.48059 1.24972 0.94691 0.99931 0.92358 0.86262 0.79140 0.81697 0.78691 1.20274 1.19382 1.23229 1.21384 0.88809 0.95273 1.54749 0.90189 1.19941 0.94349 0.85248 0.86475 0.91642 1.86418 1.77510 1.58114 1.16674 1.21288 0.78412 1.03816 1.05553 1.29210 0.99585 0.92392 0.79200 1.71990 0.97793 1.21529 1.29880 1.22867 0.92742 1.00379 0.86402 1.17323 0.87946 1.19899 0.92716 1.24072 0.93579 0.96123 0.95171 1.77318 1.06572 1.24973 1.02800 1.46166 1.09245 1.58472 1.03887 0.71150 1.22557 0.88555 0.98076 0.95802 1.74785 0.95679 1.23930 1.17046 1.85229 1.11999 1.66382 1.35368 0.92300 0.78652 0.87455 0.87669 0.78681 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.96 55.43 0.77 -25.00 15 2 C 0.09 2.36 5.47 -17.82 -0.10 2.26 15 3 Si 0.91 22.58 26.18 -169.99 -4.45 18.13 15 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 5 H -0.27 -6.67 6.54 56.52 0.37 -6.30 15 6 H -0.30 -7.50 7.11 56.52 0.40 -7.10 15 7 C -0.56 -14.47 9.34 -34.44 -0.32 -14.79 15 8 H 0.08 2.15 7.99 -52.49 -0.42 1.73 15 9 C 0.20 4.31 2.29 -27.88 -0.06 4.25 15 10 H 0.07 1.51 7.20 -51.93 -0.37 1.14 15 11 O -0.58 -12.68 10.79 -35.23 -0.38 -13.06 15 12 C -0.05 -0.89 5.46 -27.88 -0.15 -1.04 15 13 C 0.22 3.81 7.52 -12.99 -0.10 3.72 15 14 N -0.48 -8.56 11.58 -9.88 -0.11 -8.67 15 15 C 0.25 4.15 8.02 -156.10 -1.25 2.90 15 16 C -0.17 -2.29 6.09 -105.34 -0.64 -2.93 15 17 C 0.10 1.29 12.01 -17.05 -0.20 1.09 15 18 N -0.30 -3.60 12.67 30.81 0.39 -3.21 15 19 N -0.47 -4.28 7.32 30.62 0.22 -4.06 15 20 H 0.44 2.26 8.96 -182.67 -1.64 0.62 15 21 C 0.10 1.06 11.94 -16.93 -0.20 0.86 15 22 N -0.40 -6.94 12.18 30.97 0.38 -6.56 15 23 O 0.07 1.16 11.29 18.07 0.20 1.36 15 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 25 H 0.37 6.96 9.04 45.56 0.41 7.38 15 26 H 0.11 1.71 8.14 -51.93 -0.42 1.29 15 27 H 0.11 1.64 8.14 -51.93 -0.42 1.22 15 28 H 0.20 2.28 8.06 -52.49 -0.42 1.85 15 29 H 0.19 1.41 8.06 -52.49 -0.42 0.99 15 LS Contribution 268.76 15.07 4.05 4.05 Total: -1.00 -32.56 268.76 -4.84 -37.40 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.88 Total: 3.32 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.03 Total: -3.69 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 1.65 Total: -47.51 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.18 Total: -11.70 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.45 Total: 18.13 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.56 -4.84 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381230042.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.898 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds