Wall clock time and date at job start Mon Mar 30 2020 21:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48488 * 109.47190 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.46787 * 30.00028 * 3 2 1 6 6 H 1.48498 * 109.46825 * 149.99621 * 3 2 1 7 7 C 1.37882 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99836 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47070 * 60.00336 * 9 7 2 11 11 O 1.42899 * 109.47520 * 300.00412 * 9 7 2 12 12 C 1.52995 * 109.47210 * 180.02562 * 9 7 2 13 13 C 1.50697 * 109.47624 * 185.00255 * 12 9 7 14 14 N 1.30986 * 126.43238 * 89.99323 * 13 12 9 15 15 C 1.35235 * 105.57532 * 179.97438 * 14 13 12 16 16 C 1.48362 * 126.41318 * 179.97438 * 15 14 13 17 17 C 1.40903 * 126.24395 * 0.02733 * 16 15 14 18 18 N 1.30630 * 108.06692 * 180.02562 * 17 16 15 19 19 N 1.40009 * 108.54685 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.87301 * 180.02562 * 19 18 17 21 21 C 1.34667 * 108.25066 * 359.73173 * 19 18 17 22 22 N 1.30798 * 107.16473 * 0.02562 * 15 14 13 23 23 O 1.21293 * 110.09466 * 359.97438 * 22 15 14 24 24 H 0.96999 * 120.00263 * 359.97438 * 1 2 3 25 25 H 0.96701 * 113.99791 * 299.99980 * 11 9 7 26 26 H 1.08998 * 109.47052 * 64.99942 * 12 9 7 27 27 H 1.09003 * 109.47312 * 305.00345 * 12 9 7 28 28 H 1.07995 * 125.96321 * 359.97438 * 17 16 15 29 29 H 1.07999 * 126.19251 * 180.30218 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 0.4299 -2.5751 1.1665 12 6 2.2453 -3.6620 -0.0005 13 6 1.4960 -4.9636 -0.1244 14 7 1.1790 -5.5758 -1.2382 15 6 0.5193 -6.6949 -0.8624 16 6 -0.0484 -7.7272 -1.7642 17 6 0.0014 -7.7218 -3.1723 18 7 -0.6061 -8.7950 -3.6033 19 7 -1.0645 -9.5216 -2.4977 20 1 -1.5495 -10.3609 -2.5306 21 6 -0.7105 -8.8579 -1.3807 22 7 0.4746 -6.6960 0.4448 23 8 1.0304 -5.7104 0.8816 24 1 -0.4850 0.8400 0.0004 25 1 0.9223 -2.5300 1.9975 26 1 2.8115 -3.6559 0.9308 27 1 2.9295 -3.5551 -0.8423 28 1 0.4608 -6.9626 -3.7878 29 1 -0.9148 -9.1639 -0.3653 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381230047.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:02 Heat of formation + Delta-G solvation = 87.174381 kcal Electronic energy + Delta-G solvation = -17309.702245 eV Core-core repulsion = 14237.973052 eV Total energy + Delta-G solvation = -3071.729193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.93436 -41.30904 -36.33219 -35.32027 -32.91065 -32.20223 -31.72286 -30.23885 -29.12030 -25.79619 -24.04945 -23.07217 -21.71261 -21.12018 -19.94063 -18.49435 -17.54189 -17.16787 -16.36935 -14.84764 -14.72775 -14.66897 -14.58481 -14.45633 -13.86272 -13.60628 -13.02748 -12.77429 -12.08615 -11.59600 -11.32474 -11.13630 -11.08770 -10.87904 -10.85545 -10.52858 -10.20377 -10.04781 -9.89689 -9.17989 -8.65544 -8.52873 -8.26694 -6.08807 -4.29217 1.31093 1.79062 2.25938 2.58488 3.25543 3.29175 3.32844 3.34383 3.43335 3.93682 4.32992 4.37916 4.71567 4.82724 5.18779 5.26065 5.55058 5.73171 5.91023 6.00933 6.12017 6.26941 6.31266 6.52646 6.59756 6.93894 7.37225 7.54855 7.73721 8.00539 8.66688 8.72748 9.26862 9.47834 10.95541 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.044361 B = 0.004462 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.030257 B = 6273.563064 C = 6512.945297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.236 3.764 10 H 0.065 0.935 11 O -0.564 6.564 12 C -0.062 4.062 13 C 0.224 3.776 14 N -0.493 5.493 15 C 0.245 3.755 16 C -0.163 4.163 17 C 0.099 3.901 18 N -0.296 5.296 19 N -0.471 5.471 20 H 0.444 0.556 21 C 0.102 3.898 22 N -0.402 5.402 23 O 0.073 5.927 24 H 0.263 0.737 25 H 0.349 0.651 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.196 0.804 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -14.885 -1.194 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.127 4.127 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.080 0.920 9 C 0.177 3.823 10 H 0.083 0.917 11 O -0.366 6.366 12 C -0.102 4.102 13 C 0.005 3.995 14 N -0.227 5.227 15 C -0.026 4.026 16 C -0.177 4.177 17 C -0.090 4.090 18 N -0.117 5.117 19 N -0.178 5.178 20 H 0.288 0.712 21 C -0.050 4.050 22 N -0.114 5.114 23 O 0.017 5.983 24 H 0.072 0.928 25 H 0.194 0.806 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.213 0.787 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.345 -16.149 -2.646 16.368 hybrid contribution 0.931 1.194 1.155 1.904 sum 0.586 -14.955 -1.491 15.040 Atomic orbital electron populations 1.70077 1.06044 1.26771 1.46178 1.25044 0.94723 0.99328 0.93579 0.86586 0.79878 0.83130 0.78274 1.20446 1.21114 1.19665 1.21507 0.93297 0.90700 1.55795 0.91962 1.19460 0.87702 0.88227 0.86902 0.91699 1.86618 1.38434 1.96140 1.15451 1.21567 0.98812 0.84997 1.04819 1.29192 0.93600 0.96192 0.80544 1.71991 1.17721 1.05912 1.27069 1.22826 0.98212 0.93584 0.87987 1.17327 1.12155 0.96295 0.91934 1.24070 0.96281 0.95624 0.93074 1.77303 1.18333 1.07271 1.08814 1.46155 1.46154 1.21926 1.03595 0.71185 1.22552 0.96472 0.92647 0.93360 1.74764 1.18255 1.06171 1.12194 1.85229 1.52065 1.24574 1.36422 0.92760 0.80647 0.88923 0.87329 0.78708 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 12.84 55.43 0.71 -23.86 15 2 C 0.08 2.15 5.40 -17.82 -0.10 2.05 15 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.58 -14.67 8.76 -34.44 -0.30 -14.97 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.24 5.60 2.81 -27.89 -0.08 5.53 15 10 H 0.07 1.76 8.14 -51.92 -0.42 1.34 15 11 O -0.56 -13.80 12.48 -35.23 -0.44 -14.24 15 12 C -0.06 -1.15 5.46 -27.89 -0.15 -1.31 15 13 C 0.22 4.26 7.52 -12.98 -0.10 4.16 15 14 N -0.49 -9.52 11.58 -9.87 -0.11 -9.63 15 15 C 0.24 4.39 8.02 -156.10 -1.25 3.13 15 16 C -0.16 -2.41 6.09 -105.34 -0.64 -3.05 15 17 C 0.10 1.35 12.01 -17.05 -0.20 1.15 15 18 N -0.30 -3.79 12.67 30.81 0.39 -3.40 15 19 N -0.47 -4.57 7.32 30.62 0.22 -4.35 15 20 H 0.44 2.49 8.96 -182.67 -1.64 0.85 15 21 C 0.10 1.13 11.94 -16.93 -0.20 0.93 15 22 N -0.40 -7.38 12.18 30.98 0.38 -7.00 15 23 O 0.07 1.37 11.29 18.05 0.20 1.58 15 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 25 H 0.35 7.30 9.04 45.56 0.41 7.71 15 26 H 0.09 1.49 8.14 -51.93 -0.42 1.06 15 27 H 0.11 1.89 8.14 -51.93 -0.42 1.46 15 28 H 0.20 2.43 8.06 -52.49 -0.42 2.00 15 29 H 0.19 1.54 8.06 -52.49 -0.42 1.12 15 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -32.56 273.83 -5.45 -38.01 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.88 Total: 5.90 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.03 Total: -2.38 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 1.59 Total: -48.24 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.24 Total: -12.66 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.56 -5.45 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381230047.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.183 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds