Wall clock time and date at job start Mon Mar 30 2020 21:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48488 * 109.47190 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.46787 * 30.00028 * 3 2 1 6 6 H 1.48498 * 109.46825 * 149.99621 * 3 2 1 7 7 C 1.37882 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99836 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47070 * 60.00336 * 9 7 2 11 11 O 1.42899 * 109.47520 * 300.00412 * 9 7 2 12 12 C 1.52995 * 109.47210 * 180.02562 * 9 7 2 13 13 C 1.50697 * 109.47624 * 185.00255 * 12 9 7 14 14 N 1.30986 * 126.43238 * 89.99323 * 13 12 9 15 15 C 1.35235 * 105.57532 * 179.97438 * 14 13 12 16 16 C 1.48362 * 126.41318 * 179.97438 * 15 14 13 17 17 C 1.40903 * 126.24395 * 0.02733 * 16 15 14 18 18 N 1.30630 * 108.06692 * 180.02562 * 17 16 15 19 19 N 1.40009 * 108.54685 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.87301 * 180.02562 * 19 18 17 21 21 C 1.34667 * 108.25066 * 359.73173 * 19 18 17 22 22 N 1.30798 * 107.16473 * 0.02562 * 15 14 13 23 23 O 1.21293 * 110.09466 * 359.97438 * 22 15 14 24 24 H 0.96999 * 120.00263 * 359.97438 * 1 2 3 25 25 H 0.96701 * 113.99791 * 299.99980 * 11 9 7 26 26 H 1.08998 * 109.47052 * 64.99942 * 12 9 7 27 27 H 1.09003 * 109.47312 * 305.00345 * 12 9 7 28 28 H 1.07995 * 125.96321 * 359.97438 * 17 16 15 29 29 H 1.07999 * 126.19251 * 180.30218 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 0.4299 -2.5751 1.1665 12 6 2.2453 -3.6620 -0.0005 13 6 1.4960 -4.9636 -0.1244 14 7 1.1790 -5.5758 -1.2382 15 6 0.5193 -6.6949 -0.8624 16 6 -0.0484 -7.7272 -1.7642 17 6 0.0014 -7.7218 -3.1723 18 7 -0.6061 -8.7950 -3.6033 19 7 -1.0645 -9.5216 -2.4977 20 1 -1.5495 -10.3609 -2.5306 21 6 -0.7105 -8.8579 -1.3807 22 7 0.4746 -6.6960 0.4448 23 8 1.0304 -5.7104 0.8816 24 1 -0.4850 0.8400 0.0004 25 1 0.9223 -2.5300 1.9975 26 1 2.8115 -3.6559 0.9308 27 1 2.9295 -3.5551 -0.8423 28 1 0.4608 -6.9626 -3.7878 29 1 -0.9148 -9.1639 -0.3653 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381230047.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:01 Heat of formation + Delta-G solvation = 60.175470 kcal Electronic energy + Delta-G solvation = -17310.873006 eV Core-core repulsion = 14237.973052 eV Total energy + Delta-G solvation = -3072.899954 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.34019 -42.27368 -38.14802 -36.74396 -34.41829 -34.17786 -32.69072 -31.54326 -30.58108 -27.65385 -25.33075 -24.48131 -23.09792 -22.46805 -21.17528 -19.61820 -19.08247 -18.87215 -17.75219 -16.63531 -16.40731 -15.90190 -15.80120 -15.60443 -15.46902 -15.08583 -14.64492 -13.94464 -13.57934 -13.25395 -12.94374 -12.87378 -12.68690 -12.49895 -12.16234 -12.02195 -11.89070 -11.59417 -10.98581 -10.84297 -10.67061 -10.20260 -9.58631 -8.10557 -6.36624 0.08048 0.63489 1.03569 1.48611 1.49279 1.59735 1.76868 1.97193 2.07102 2.44811 2.70336 3.08241 3.17569 3.70553 3.87285 4.19315 4.29600 4.37169 4.43318 4.51241 4.66134 4.87775 5.04737 5.06304 5.29130 5.61867 5.73205 6.03365 6.18465 6.45142 6.75407 7.24354 7.37566 7.57366 8.94654 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.044361 B = 0.004462 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.030257 B = 6273.563064 C = 6512.945297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.237 3.763 10 H 0.020 0.980 11 O -0.583 6.583 12 C -0.047 4.047 13 C 0.218 3.782 14 N -0.512 5.512 15 C 0.248 3.752 16 C -0.208 4.208 17 C 0.092 3.908 18 N -0.310 5.310 19 N -0.449 5.449 20 H 0.463 0.537 21 C 0.132 3.868 22 N -0.411 5.411 23 O 0.064 5.936 24 H 0.260 0.740 25 H 0.364 0.636 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.197 0.803 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -15.930 -0.867 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.180 1.180 7 C -0.616 4.616 8 H 0.097 0.903 9 C 0.178 3.822 10 H 0.038 0.962 11 O -0.388 6.388 12 C -0.086 4.086 13 C -0.001 4.001 14 N -0.246 5.246 15 C -0.023 4.023 16 C -0.222 4.222 17 C -0.097 4.097 18 N -0.131 5.131 19 N -0.157 5.157 20 H 0.312 0.688 21 C -0.022 4.022 22 N -0.124 5.124 23 O 0.011 5.989 24 H 0.069 0.931 25 H 0.210 0.790 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.214 0.786 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.547 -17.224 -2.319 17.388 hybrid contribution 0.585 1.369 1.024 1.807 sum 1.132 -15.854 -1.294 15.947 Atomic orbital electron populations 1.70236 1.07950 1.27442 1.48390 1.25948 0.95397 1.03199 0.93376 0.85488 0.78911 0.78513 0.78228 1.20249 1.21574 1.17976 1.21966 0.94186 0.91350 1.54120 0.90325 1.19203 0.87632 0.90110 0.85239 0.96234 1.86552 1.39543 1.96322 1.16396 1.21311 0.97485 0.82771 1.07019 1.29206 0.93734 0.96437 0.80733 1.71989 1.18376 1.06771 1.27499 1.23307 0.97200 0.93519 0.88230 1.17537 1.15095 0.97549 0.92053 1.24146 0.96525 0.96060 0.92959 1.77270 1.18655 1.07305 1.09920 1.46202 1.44853 1.22088 1.02583 0.68762 1.22933 0.93711 0.90910 0.94682 1.74725 1.19023 1.06292 1.12406 1.85201 1.52357 1.24853 1.36456 0.93077 0.78950 0.85916 0.86071 0.78605 0.76626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.88 12.84 21.45 0.28 -52.60 15 2 C 0.02 1.24 5.40 84.66 0.46 1.70 15 3 Si 0.96 41.31 29.54 68.60 2.03 43.34 15 4 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 7 C -0.58 -29.15 8.76 25.60 0.22 -28.93 15 8 H 0.08 3.63 7.74 -2.91 -0.02 3.61 15 9 C 0.24 11.35 2.81 29.84 0.08 11.43 15 10 H 0.02 1.11 8.14 -2.38 -0.02 1.09 15 11 O -0.58 -28.82 12.48 -148.98 -1.86 -30.68 15 12 C -0.05 -1.69 5.46 29.85 0.16 -1.52 15 13 C 0.22 8.25 7.52 88.35 0.66 8.91 15 14 N -0.51 -19.81 11.58 -302.42 -3.50 -23.31 15 15 C 0.25 8.78 8.02 137.26 1.10 9.89 15 16 C -0.21 -5.91 6.09 -20.33 -0.12 -6.03 15 17 C 0.09 2.46 12.01 85.52 1.03 3.49 15 18 N -0.31 -7.45 12.67 -56.44 -0.71 -8.17 15 19 N -0.45 -7.49 7.32 -57.02 -0.42 -7.90 15 20 H 0.46 3.67 8.96 -213.38 -1.91 1.76 15 21 C 0.13 2.58 11.94 83.86 1.00 3.58 15 22 N -0.41 -14.79 12.18 -59.05 -0.72 -15.51 15 23 O 0.06 2.39 11.29 74.64 0.84 3.23 15 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 15 25 H 0.36 15.13 9.04 -74.06 -0.67 14.46 15 26 H 0.12 3.66 8.14 -2.39 -0.02 3.64 15 27 H 0.12 4.05 8.14 -2.39 -0.02 4.03 15 28 H 0.20 4.95 8.06 -2.91 -0.02 4.92 15 29 H 0.22 2.82 8.06 -2.91 -0.02 2.80 15 Total: -1.00 -70.51 273.83 -0.83 -71.34 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -1.36 Total: 17.76 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.60 Total: 2.50 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -5.08 Total: -107.50 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.02 Total: -27.45 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -70.51 -0.83 -71.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381230047.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.517 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds