Wall clock time and date at job start Mon Mar 30 2020 21:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31803 * 119.03445 * 2 1 4 4 C 1.32255 * 120.89930 * 180.02562 * 3 2 1 5 5 C 1.39286 * 119.00957 * 0.24970 * 4 3 2 6 6 N 1.39776 * 120.87666 * 179.73235 * 5 4 3 7 7 C 1.34779 * 119.99729 * 325.07347 * 6 5 4 8 8 O 1.21465 * 119.99961 * 4.68390 * 7 6 5 9 9 C 1.48735 * 120.00117 * 184.68034 * 7 6 5 10 10 O 1.21515 * 119.99862 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00100 * 180.02562 * 9 7 6 12 12 C 1.36117 * 119.99752 * 179.97438 * 11 9 7 13 13 H 1.07994 * 120.00004 * 359.97438 * 12 11 9 14 14 C 1.39592 * 119.99463 * 179.97438 * 12 11 9 15 15 N 1.31015 * 120.00194 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99685 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47012 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46934 * 120.00071 * 16 14 12 19 19 H 1.48500 * 109.47153 * 239.99904 * 16 14 12 20 20 C 1.39293 * 118.24950 * 359.48801 * 5 4 3 21 21 N 1.31807 * 119.03242 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47081 * 89.99966 * 1 2 3 23 23 H 1.09004 * 109.46789 * 209.99969 * 1 2 3 24 24 H 1.08999 * 109.46761 * 329.99881 * 1 2 3 25 25 H 1.08004 * 120.49527 * 179.97438 * 4 3 2 26 26 H 0.96998 * 120.00626 * 145.07809 * 6 5 4 27 27 H 0.96994 * 119.99814 * 359.97438 * 11 9 7 28 28 H 0.97001 * 119.99365 * 180.02562 * 15 14 12 29 29 H 1.08002 * 120.49822 * 180.23873 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1524 0.0000 4 6 3.4685 1.1954 -0.0005 5 6 4.1833 0.0000 -0.0064 6 7 5.5810 -0.0001 -0.0127 7 6 6.2518 0.9584 -0.6820 8 8 5.6451 1.8697 -1.2080 9 6 7.7351 0.9002 -0.7763 10 8 8.3421 -0.0112 -0.2495 11 7 8.4059 1.8589 -1.4451 12 6 9.7634 1.8059 -1.5309 13 1 10.3028 0.9959 -1.0628 14 6 10.4581 2.7986 -2.2241 15 7 9.8036 3.7810 -2.7924 16 14 12.3209 2.7255 -2.3425 17 1 12.8160 1.5252 -1.6219 18 1 12.7234 2.6477 -3.7698 19 1 12.9042 3.9459 -1.7296 20 6 3.4685 -1.1956 -0.0005 21 7 2.1466 -1.1525 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 3.9860 2.1434 -0.0009 26 1 6.0682 -0.6899 0.4644 27 1 7.9214 2.5866 -1.8652 28 1 10.2864 4.4706 -3.2744 29 1 3.9859 -2.1436 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384202464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:07 Heat of formation + Delta-G solvation = -21.228353 kcal Electronic energy + Delta-G solvation = -17171.533971 eV Core-core repulsion = 14095.104082 eV Total energy + Delta-G solvation = -3076.429889 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.29229 -39.67843 -37.53139 -35.41361 -34.30103 -33.69109 -31.94025 -31.55654 -28.05451 -25.98417 -24.77244 -23.73021 -22.07106 -19.94629 -18.65250 -17.99248 -17.34335 -16.66214 -16.41689 -15.66501 -15.20679 -14.83530 -14.67388 -14.03126 -13.70303 -13.31287 -13.07108 -12.99119 -12.61992 -12.44894 -11.92981 -11.54154 -11.33536 -10.89158 -10.81454 -10.67516 -10.53730 -10.51253 -9.89274 -9.27340 -8.51053 -8.41542 -8.35183 -6.85325 -4.15841 0.79235 1.07650 2.14596 2.91796 3.03389 3.09710 3.17362 3.71531 3.90704 4.00032 4.03993 4.18584 4.47106 4.71908 4.95331 5.01970 5.18635 5.44567 5.45576 5.70129 5.81484 5.91398 6.15376 6.57016 6.97483 7.14004 7.28895 7.60750 8.03740 8.09656 8.29794 8.76176 9.10193 9.64339 10.28616 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.062481 B = 0.004223 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.031750 B = 6629.448191 C = 6994.946715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.282 3.718 3 N -0.499 5.499 4 C 0.148 3.852 5 C 0.050 3.950 6 N -0.647 5.647 7 C 0.513 3.487 8 O -0.527 6.527 9 C 0.388 3.612 10 O -0.596 6.596 11 N -0.488 5.488 12 C -0.302 4.302 13 H 0.117 0.883 14 C 0.032 3.968 15 N -0.859 5.859 16 Si 0.942 3.058 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.124 3.876 21 N -0.502 5.502 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.183 0.817 26 H 0.425 0.575 27 H 0.406 0.594 28 H 0.283 0.717 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 -5.242 4.160 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.015 3.985 3 N -0.214 5.214 4 C -0.021 4.021 5 C -0.050 4.050 6 N -0.295 5.295 7 C 0.300 3.700 8 O -0.402 6.402 9 C 0.172 3.828 10 O -0.485 6.485 11 N -0.122 5.122 12 C -0.433 4.433 13 H 0.134 0.866 14 C -0.176 4.176 15 N -0.497 5.497 16 Si 0.767 3.233 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.046 4.046 21 N -0.216 5.216 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.200 0.800 26 H 0.264 0.736 27 H 0.241 0.759 28 H 0.094 0.906 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.612 -4.979 3.976 13.246 hybrid contribution 1.840 0.126 -0.219 1.857 sum -9.772 -4.853 3.757 11.540 Atomic orbital electron populations 1.20483 0.85792 1.03847 1.03645 1.23193 0.98250 0.83622 0.93450 1.68308 1.09367 1.30136 1.13568 1.23637 0.88882 0.98725 0.90813 1.19665 0.85575 0.96734 1.03044 1.43081 1.02729 1.31830 1.51820 1.21084 0.90553 0.81043 0.77271 1.90699 1.70288 1.33440 1.45752 1.18520 0.85553 0.87985 0.90694 1.90613 1.68114 1.36659 1.53157 1.41595 1.07777 1.21428 1.41377 1.20019 0.81016 1.10355 1.31918 0.86558 1.25678 1.02135 0.94610 0.95211 1.69486 1.38068 1.11340 1.30789 0.85609 0.80162 0.79027 0.78521 1.18538 1.20109 1.20099 1.23120 0.89612 0.97307 0.94522 1.68183 1.08850 1.30458 1.14081 0.89935 0.89887 0.89801 0.79973 0.73621 0.75882 0.90616 0.81109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.31 36.00 0.37 -0.38 15 2 C 0.28 3.89 7.64 -157.18 -1.20 2.69 15 3 N -0.50 -7.74 10.32 -10.56 -0.11 -7.85 15 4 C 0.15 2.40 9.98 -16.98 -0.17 2.23 15 5 C 0.05 0.77 6.34 -83.45 -0.53 0.24 15 6 N -0.65 -10.41 5.35 -10.29 -0.05 -10.46 15 7 C 0.51 10.31 7.73 -11.92 -0.09 10.21 15 8 O -0.53 -11.27 13.97 5.40 0.08 -11.20 15 9 C 0.39 9.11 7.81 -11.92 -0.09 9.01 15 10 O -0.60 -14.96 16.04 5.35 0.09 -14.87 15 11 N -0.49 -12.27 5.25 -11.62 -0.06 -12.34 15 12 C -0.30 -7.88 9.67 -15.15 -0.15 -8.03 15 13 H 0.12 3.10 7.15 -52.49 -0.38 2.72 15 14 C 0.03 0.79 5.51 -17.39 -0.10 0.69 15 15 N -0.86 -21.89 13.03 55.53 0.72 -21.17 15 16 Si 0.94 19.05 29.56 -169.99 -5.02 14.03 15 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 18 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 20 C 0.12 1.63 11.26 -16.98 -0.19 1.44 15 21 N -0.50 -6.95 10.32 -10.56 -0.11 -7.06 15 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 25 H 0.18 3.09 6.32 -52.48 -0.33 2.76 15 26 H 0.43 6.07 8.29 -40.82 -0.34 5.73 15 27 H 0.41 10.24 7.35 -40.82 -0.30 9.94 15 28 H 0.28 6.66 8.30 -40.82 -0.34 6.32 15 29 H 0.17 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 271.30 15.07 4.09 4.09 Total: -1.00 -29.48 271.30 -4.70 -34.18 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -2.17 Total: 14.55 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: -2.15 Total: 18.10 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.39 Total: -58.88 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.16 Total: -26.07 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.48 -4.70 -34.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384202464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.952 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds