Wall clock time and date at job start Mon Mar 30 2020 21:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31803 * 119.03445 * 2 1 4 4 C 1.32255 * 120.89930 * 180.02562 * 3 2 1 5 5 C 1.39286 * 119.00957 * 0.24970 * 4 3 2 6 6 N 1.39776 * 120.87666 * 179.73235 * 5 4 3 7 7 C 1.34779 * 119.99729 * 325.07347 * 6 5 4 8 8 O 1.21465 * 119.99961 * 4.68390 * 7 6 5 9 9 C 1.48735 * 120.00117 * 184.68034 * 7 6 5 10 10 O 1.21515 * 119.99862 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00100 * 180.02562 * 9 7 6 12 12 C 1.36117 * 119.99752 * 179.97438 * 11 9 7 13 13 H 1.07994 * 120.00004 * 359.97438 * 12 11 9 14 14 C 1.39592 * 119.99463 * 179.97438 * 12 11 9 15 15 N 1.31015 * 120.00194 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99685 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47012 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46934 * 120.00071 * 16 14 12 19 19 H 1.48500 * 109.47153 * 239.99904 * 16 14 12 20 20 C 1.39293 * 118.24950 * 359.48801 * 5 4 3 21 21 N 1.31807 * 119.03242 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47081 * 89.99966 * 1 2 3 23 23 H 1.09004 * 109.46789 * 209.99969 * 1 2 3 24 24 H 1.08999 * 109.46761 * 329.99881 * 1 2 3 25 25 H 1.08004 * 120.49527 * 179.97438 * 4 3 2 26 26 H 0.96998 * 120.00626 * 145.07809 * 6 5 4 27 27 H 0.96994 * 119.99814 * 359.97438 * 11 9 7 28 28 H 0.97001 * 119.99365 * 180.02562 * 15 14 12 29 29 H 1.08002 * 120.49822 * 180.23873 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1524 0.0000 4 6 3.4685 1.1954 -0.0005 5 6 4.1833 0.0000 -0.0064 6 7 5.5810 -0.0001 -0.0127 7 6 6.2518 0.9584 -0.6820 8 8 5.6451 1.8697 -1.2080 9 6 7.7351 0.9002 -0.7763 10 8 8.3421 -0.0112 -0.2495 11 7 8.4059 1.8589 -1.4451 12 6 9.7634 1.8059 -1.5309 13 1 10.3028 0.9959 -1.0628 14 6 10.4581 2.7986 -2.2241 15 7 9.8036 3.7810 -2.7924 16 14 12.3209 2.7255 -2.3425 17 1 12.8160 1.5252 -1.6219 18 1 12.7234 2.6477 -3.7698 19 1 12.9042 3.9459 -1.7296 20 6 3.4685 -1.1956 -0.0005 21 7 2.1466 -1.1525 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 3.9860 2.1434 -0.0009 26 1 6.0682 -0.6899 0.4644 27 1 7.9214 2.5866 -1.8652 28 1 10.2864 4.4706 -3.2744 29 1 3.9859 -2.1436 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384202464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:06 Heat of formation + Delta-G solvation = -43.765741 kcal Electronic energy + Delta-G solvation = -17172.511265 eV Core-core repulsion = 14095.104082 eV Total energy + Delta-G solvation = -3077.407183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.53518 -41.24884 -39.32613 -36.93517 -36.09500 -34.83557 -33.55444 -32.96850 -29.23225 -27.74695 -25.94782 -25.24200 -23.38694 -21.52134 -20.51440 -19.55973 -18.66261 -17.94295 -17.77725 -17.33854 -16.78310 -16.37000 -16.15467 -15.73694 -14.95646 -14.81015 -14.70694 -14.26789 -13.71243 -13.59148 -13.17864 -12.99927 -12.78286 -12.59315 -12.31826 -12.11427 -12.08462 -11.93822 -11.71145 -10.54127 -10.32823 -10.24124 -9.61264 -8.71362 -6.14836 -0.41055 -0.07699 0.50580 1.37187 1.44758 1.49626 1.62229 2.23411 2.24856 2.62301 2.98929 3.03931 3.07103 3.11252 3.41677 3.75932 3.91603 4.15958 4.58371 4.72660 4.75112 4.88543 5.11740 5.22144 5.41822 5.59673 5.81292 5.92012 6.25229 6.63925 6.86641 6.96890 7.19147 7.71856 8.43978 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.062481 B = 0.004223 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.031750 B = 6629.448191 C = 6994.946715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.282 3.718 3 N -0.517 5.517 4 C 0.137 3.863 5 C 0.030 3.970 6 N -0.625 5.625 7 C 0.524 3.476 8 O -0.542 6.542 9 C 0.390 3.610 10 O -0.612 6.612 11 N -0.502 5.502 12 C -0.341 4.341 13 H 0.103 0.897 14 C -0.003 4.003 15 N -0.890 5.890 16 Si 1.011 2.989 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.267 1.267 20 C 0.145 3.855 21 N -0.507 5.507 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.168 0.832 26 H 0.435 0.565 27 H 0.402 0.598 28 H 0.291 0.709 29 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -6.429 4.388 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 N -0.232 5.232 4 C -0.031 4.031 5 C -0.070 4.070 6 N -0.273 5.273 7 C 0.309 3.691 8 O -0.418 6.418 9 C 0.175 3.825 10 O -0.502 6.502 11 N -0.136 5.136 12 C -0.470 4.470 13 H 0.121 0.879 14 C -0.209 4.209 15 N -0.527 5.527 16 Si 0.832 3.168 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.191 1.191 20 C -0.025 4.025 21 N -0.221 5.221 22 H 0.115 0.885 23 H 0.119 0.881 24 H 0.112 0.888 25 H 0.185 0.815 26 H 0.276 0.724 27 H 0.237 0.763 28 H 0.101 0.899 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.463 -6.179 4.221 14.538 hybrid contribution 1.861 0.399 -0.223 1.917 sum -10.602 -5.780 3.999 12.720 Atomic orbital electron populations 1.20670 0.82838 1.05252 1.04920 1.24065 1.00073 0.83113 0.91242 1.68366 1.08952 1.31193 1.14706 1.23509 0.89590 0.98736 0.91258 1.19683 0.84605 0.97378 1.05334 1.42750 1.03333 1.30688 1.50576 1.20369 0.89038 0.81826 0.77859 1.90707 1.70078 1.34287 1.46771 1.19093 0.87129 0.87011 0.89258 1.90584 1.69246 1.37040 1.53335 1.41664 1.07806 1.21871 1.42249 1.20079 0.81639 1.11280 1.34043 0.87868 1.26579 1.06589 0.93656 0.94035 1.69546 1.39924 1.11952 1.31295 0.84617 0.74317 0.79098 0.78780 1.18563 1.19175 1.19140 1.23673 0.89461 0.97783 0.91554 1.68366 1.08912 1.30269 1.14573 0.88514 0.88067 0.88828 0.81528 0.72426 0.76314 0.89925 0.77576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.31 71.24 0.73 -0.54 15 2 C 0.28 7.14 7.64 138.74 1.06 8.20 15 3 N -0.52 -15.47 10.32 -187.34 -1.93 -17.40 15 4 C 0.14 4.37 9.98 84.88 0.85 5.22 15 5 C 0.03 0.85 6.34 38.38 0.24 1.10 15 6 N -0.63 -19.48 5.35 -304.77 -1.63 -21.11 15 7 C 0.52 21.06 7.73 87.05 0.67 21.73 15 8 O -0.54 -23.50 13.97 -3.61 -0.05 -23.55 15 9 C 0.39 18.59 7.81 87.05 0.68 19.27 15 10 O -0.61 -30.92 16.04 -3.76 -0.06 -30.98 15 11 N -0.50 -25.99 5.25 -308.95 -1.62 -27.61 15 12 C -0.34 -18.19 9.67 84.36 0.82 -17.38 15 13 H 0.10 5.66 7.15 -2.91 -0.02 5.64 15 14 C 0.00 -0.17 5.51 85.14 0.47 0.30 15 15 N -0.89 -45.88 13.03 21.77 0.28 -45.60 15 16 Si 1.01 38.95 29.56 68.60 2.03 40.97 15 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 18 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 19 H -0.27 -9.82 7.11 99.48 0.71 -9.11 15 20 C 0.14 3.41 11.26 84.88 0.96 4.36 15 21 N -0.51 -12.62 10.32 -187.33 -1.93 -14.55 15 22 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 25 H 0.17 5.79 6.32 -2.91 -0.02 5.77 15 26 H 0.44 11.76 8.29 -92.71 -0.77 10.99 15 27 H 0.40 21.02 7.35 -92.71 -0.68 20.33 15 28 H 0.29 13.68 8.30 -92.71 -0.77 12.91 15 29 H 0.21 3.27 8.06 -2.91 -0.02 3.25 15 Total: -1.00 -63.59 271.30 1.34 -62.25 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.22 Total: 35.31 kcal Atomic # 6 Polarization: 35.79 SS G_CDS: 6.48 Total: 42.27 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -6.83 Total: -126.27 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.11 Total: -54.53 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.97 kcal Total: -63.59 1.34 -62.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384202464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.482 kcal (2) G-P(sol) polarization free energy of solvation -63.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds