Wall clock time and date at job start Mon Mar 30 2020 21:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99640 * 3 2 1 5 5 H 1.48499 * 109.46915 * 29.99299 * 3 2 1 6 6 H 1.48497 * 109.47614 * 149.99846 * 3 2 1 7 7 C 1.37884 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99496 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 179.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99884 * 12 11 10 14 14 C 1.35912 * 117.00151 * 180.02562 * 13 12 11 15 15 C 1.38896 * 119.96904 * 359.71802 * 14 13 12 16 16 C 1.38290 * 120.28957 * 179.76866 * 15 14 13 17 17 C 1.37933 * 120.23791 * 0.51098 * 16 15 14 18 18 C 1.39831 * 119.93687 * 359.74749 * 17 16 15 19 19 C 1.47186 * 120.14631 * 180.02562 * 18 17 16 20 20 O 1.21252 * 119.99690 * 179.97438 * 19 18 17 21 21 C 1.38379 * 119.97072 * 180.02562 * 14 13 12 22 22 H 0.97003 * 119.99801 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 24 24 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 25 25 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 26 26 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 27 27 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 28 28 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 29 29 H 1.07998 * 119.85124 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.87745 * 180.25834 * 16 15 14 31 31 H 1.07996 * 120.02781 * 179.76315 * 17 16 15 32 32 H 1.08000 * 119.99738 * 359.97438 * 19 18 17 33 33 H 1.08006 * 120.11752 * 359.94747 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6542 0.0001 12 6 5.8069 -4.1325 -0.0004 13 8 5.3797 -4.7391 -1.2217 14 6 5.6539 -6.0604 -1.3833 15 6 6.3265 -6.7563 -0.3871 16 6 6.6048 -8.1020 -0.5425 17 6 6.2255 -8.7613 -1.6932 18 6 5.5526 -8.0689 -2.7046 19 6 5.1453 -8.7681 -3.9342 20 8 4.5615 -8.1651 -4.8093 21 6 5.2684 -6.7096 -2.5429 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6798 0.8895 24 1 3.8746 -0.6807 -0.8904 25 1 5.8152 -2.1705 0.8900 26 1 5.8152 -2.1707 -0.8899 27 1 5.3311 -4.6358 0.8412 28 1 6.8897 -4.2195 0.0892 29 1 6.6299 -6.2452 0.5146 30 1 7.1245 -8.6376 0.2382 31 1 6.4479 -9.8114 -1.8126 32 1 5.3665 -9.8180 -4.0568 33 1 4.7489 -6.1684 -3.3199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385794161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:14 Heat of formation + Delta-G solvation = -90.740982 kcal Electronic energy + Delta-G solvation = -16998.238401 eV Core-core repulsion = 13990.041811 eV Total energy + Delta-G solvation = -3008.196590 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37070 -39.09106 -37.47986 -36.57067 -32.71808 -31.49484 -31.05490 -29.42994 -27.56706 -25.23184 -22.86328 -22.49570 -21.88038 -20.68822 -18.36984 -16.98529 -16.57651 -16.35251 -16.26774 -15.47862 -15.19302 -15.02142 -14.68291 -14.40192 -14.26167 -13.90855 -13.42680 -12.79706 -12.57583 -12.44784 -12.16932 -11.79619 -11.32865 -11.20378 -10.89176 -10.81403 -10.57258 -10.03801 -9.88669 -9.23897 -9.21463 -8.92394 -8.51829 -8.34573 -6.12249 -4.11758 0.43082 1.25357 2.26598 3.14064 3.24050 3.30627 3.31218 3.62908 4.05318 4.34041 4.41746 4.57264 4.76654 4.80625 4.95852 5.06977 5.18587 5.25130 5.26756 5.40477 5.59386 5.66549 5.78349 5.90865 6.04671 6.12207 6.16582 6.48597 6.53666 6.95194 7.19952 7.39084 7.56458 7.94315 8.62630 8.99324 9.46222 11.00815 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003919 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.879177 B = 7143.647281 C = 7722.676732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.064 3.936 13 O -0.297 6.297 14 C 0.128 3.872 15 C -0.182 4.182 16 C -0.095 4.095 17 C -0.116 4.116 18 C -0.156 4.156 19 C 0.382 3.618 20 O -0.454 6.454 21 C -0.095 4.095 22 H 0.267 0.733 23 H 0.004 0.996 24 H 0.001 0.999 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.436 -16.513 -0.836 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.294 6.294 11 C -0.020 4.020 12 C -0.011 4.011 13 O -0.210 6.210 14 C 0.081 3.919 15 C -0.201 4.201 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.157 4.157 19 C 0.240 3.760 20 O -0.326 6.326 21 C -0.113 4.113 22 H 0.077 0.923 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.715 -16.063 -1.437 23.227 hybrid contribution 0.740 1.127 0.457 1.424 sum 17.455 -14.935 -0.979 22.994 Atomic orbital electron populations 1.69877 1.06069 1.27119 1.50194 1.24770 0.94815 0.98746 0.94597 0.86842 0.80274 0.83733 0.78827 1.19857 1.20731 1.19142 1.20883 0.88188 0.95414 1.51368 0.89920 1.20634 0.96357 0.79214 0.94443 1.87987 1.16554 1.29784 1.95067 1.22360 0.86248 0.92772 1.00595 1.22968 0.98360 0.94041 0.85718 1.86274 1.75710 1.19332 1.39640 1.19025 0.94464 0.84259 0.94110 1.21568 1.02739 0.96028 0.99719 1.20886 0.99132 0.93711 0.97541 1.21200 0.98963 0.99918 0.93366 1.20728 1.02716 0.94289 0.98003 1.24082 0.74645 0.93627 0.83622 1.90559 1.30148 1.70563 1.41350 1.20755 1.00331 0.93516 0.96734 0.92316 0.97846 0.98174 0.91899 0.93047 0.91008 0.91104 0.84970 0.85258 0.85075 0.87586 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.92 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -15.77 9.99 -34.44 -0.34 -16.11 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.33 4.76 36.00 0.17 4.50 16 10 O -0.37 -8.87 10.29 -40.08 -0.41 -9.28 16 11 C 0.06 0.98 6.32 37.16 0.23 1.22 16 12 C 0.06 0.90 5.12 37.16 0.19 1.09 16 13 O -0.30 -4.94 10.10 -24.31 -0.25 -5.19 16 14 C 0.13 1.80 6.68 -39.29 -0.26 1.53 16 15 C -0.18 -1.98 9.04 -39.32 -0.36 -2.34 16 16 C -0.09 -0.82 10.02 -39.67 -0.40 -1.22 16 17 C -0.12 -0.95 9.79 -39.10 -0.38 -1.34 16 18 C -0.16 -1.67 5.87 -105.08 -0.62 -2.29 16 19 C 0.38 3.66 11.46 34.36 0.39 4.05 16 20 O -0.45 -6.40 17.16 5.58 0.10 -6.31 16 21 C -0.09 -1.31 9.54 -38.94 -0.37 -1.68 16 22 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 24 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 28 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 29 H 0.13 1.20 6.28 -52.49 -0.33 0.87 16 30 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.11 0.51 8.06 -52.49 -0.42 0.08 16 33 H 0.14 2.15 7.65 -52.48 -0.40 1.75 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -35.62 294.61 -5.85 -41.47 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.00 Total: -4.28 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.84 Total: -10.52 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.56 Total: -20.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.62 -5.85 -41.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385794161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.269 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds