Wall clock time and date at job start Mon Mar 30 2020 21:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30553 * 120.00652 * 2 1 4 4 N 1.40107 * 119.99668 * 359.97438 * 3 2 1 5 5 C 1.34773 * 119.99906 * 179.97438 * 4 3 2 6 6 O 1.21941 * 120.00514 * 0.02562 * 5 4 3 7 7 C 1.40895 * 119.99826 * 179.97438 * 5 4 3 8 8 H 1.08003 * 120.00112 * 0.02562 * 7 5 4 9 9 C 1.40224 * 119.99978 * 179.97438 * 7 5 4 10 10 N 1.30593 * 119.99916 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99790 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46881 * 60.00448 * 11 9 7 13 13 H 1.48504 * 109.46852 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47124 * 300.00536 * 11 9 7 15 15 C 1.46920 * 119.99738 * 180.02562 * 2 1 3 16 16 C 1.40118 * 120.15732 * 180.02562 * 15 2 1 17 17 C 1.37706 * 119.83677 * 180.30029 * 16 15 2 18 18 C 1.38792 * 120.16179 * 359.43924 * 17 16 15 19 19 F 1.35097 * 119.84219 * 180.26069 * 18 17 16 20 20 C 1.38792 * 120.31245 * 0.56083 * 18 17 16 21 21 C 1.37709 * 120.16058 * 359.72011 * 20 18 17 22 22 H 1.09006 * 109.46716 * 270.00127 * 1 2 3 23 23 H 1.09002 * 109.46836 * 29.99660 * 1 2 3 24 24 H 1.08993 * 109.47183 * 149.99877 * 1 2 3 25 25 H 0.96999 * 120.00051 * 0.02562 * 4 3 2 26 26 H 0.96997 * 119.99647 * 179.97438 * 10 9 7 27 27 H 1.08002 * 120.07635 * 0.02562 * 16 15 2 28 28 H 1.08004 * 119.91465 * 179.72201 * 17 16 15 29 29 H 1.07997 * 119.91762 * 179.70046 * 20 18 17 30 30 H 1.07999 * 120.07484 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1305 0.0000 4 7 1.4595 2.3439 -0.0005 5 6 2.1334 3.5111 0.0000 6 8 3.3528 3.5111 0.0005 7 6 1.4290 4.7313 -0.0011 8 1 0.3490 4.7314 -0.0019 9 6 2.1302 5.9456 0.0000 10 7 3.4361 5.9456 0.0015 11 14 1.1961 7.5634 -0.0007 12 1 0.3411 7.6418 1.2108 13 1 2.1612 8.6921 0.0000 14 1 0.3437 7.6423 -1.2141 15 6 2.2416 -1.2724 -0.0006 16 6 3.6428 -1.2763 0.0000 17 6 4.3245 -2.4727 -0.0068 18 6 3.6273 -3.6728 -0.0025 19 9 4.3027 -4.8428 -0.0038 20 6 2.2393 -3.6765 -0.0029 21 6 1.5443 -2.4877 -0.0020 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5138 25 1 0.4895 2.3440 -0.0005 26 1 3.9211 6.7856 0.0019 27 1 4.1866 -0.3432 0.0012 28 1 5.4046 -2.4772 -0.0110 29 1 1.7032 -4.6140 -0.0044 30 1 0.4643 -2.4922 -0.0028 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393819192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:16 Heat of formation + Delta-G solvation = -21.267893 kcal Electronic energy + Delta-G solvation = -16867.953975 eV Core-core repulsion = 13771.602410 eV Total energy + Delta-G solvation = -3096.351565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.84431 -39.07537 -37.70113 -35.71454 -32.82427 -31.96544 -31.20101 -29.20288 -28.22773 -26.37698 -23.16256 -22.67159 -20.63591 -18.90237 -17.97211 -17.48199 -16.37893 -15.73419 -15.53875 -15.48647 -14.75052 -14.40487 -14.06351 -13.91650 -13.50583 -13.07432 -12.77461 -12.73388 -12.28178 -12.19033 -11.71359 -11.42135 -11.23081 -10.93774 -10.68660 -10.63152 -10.43545 -9.51263 -9.09081 -9.07591 -8.75026 -7.81990 -7.27326 -6.43733 -4.99293 0.90478 1.33748 2.67412 3.04473 3.08187 3.10792 3.66213 3.85940 4.05400 4.30088 4.40629 4.74006 4.83886 4.90165 5.31287 5.35197 5.42384 5.60715 5.67216 5.73418 5.92433 6.00070 6.10956 6.24834 6.35335 6.56810 6.80791 6.95894 7.16761 7.77840 7.93956 8.60366 8.72193 9.23622 10.35219 10.59144 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.052117 B = 0.004076 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.122951 B = 6868.379382 C = 7390.356740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.035 3.965 3 N -0.182 5.182 4 N -0.584 5.584 5 C 0.556 3.444 6 O -0.552 6.552 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.744 5.744 11 Si 0.918 3.082 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.265 1.265 15 C -0.017 4.017 16 C -0.065 4.065 17 C -0.151 4.151 18 C 0.086 3.914 19 F -0.145 7.145 20 C -0.154 4.154 21 C -0.085 4.085 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.371 0.629 26 H 0.275 0.725 27 H 0.147 0.853 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -13.617 0.007 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 N 0.007 4.993 4 N -0.331 5.331 5 C 0.365 3.635 6 O -0.432 6.432 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.371 5.371 11 Si 0.741 3.259 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.190 1.190 15 C -0.019 4.019 16 C -0.086 4.086 17 C -0.170 4.170 18 C 0.066 3.934 19 F -0.124 7.124 20 C -0.173 4.173 21 C -0.106 4.106 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.208 0.792 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.922 -12.876 0.006 13.460 hybrid contribution -1.689 0.329 -0.003 1.721 sum -5.611 -12.547 0.003 13.744 Atomic orbital electron populations 1.21093 0.92831 1.03144 1.02731 1.22715 0.93051 0.91291 1.08239 1.74891 1.27093 0.92517 1.04806 1.48127 1.07740 1.01669 1.75598 1.16874 0.87874 0.80352 0.78417 1.90715 1.13435 1.85247 1.53784 1.19757 0.94405 0.89574 1.53602 0.91120 1.25767 0.94690 1.00680 0.92419 1.69991 1.07367 1.28239 1.31518 0.86260 0.79797 0.80071 0.79732 1.18960 1.20205 1.18966 1.18431 0.92646 0.90710 1.00126 1.21449 0.93478 0.98261 0.95365 1.21106 1.00906 0.91020 1.03963 1.17922 0.90237 0.81101 1.04183 1.91468 1.80495 1.46381 1.94068 1.20936 0.92101 0.99406 1.04848 1.21118 1.00112 0.90359 0.99009 0.90850 0.91509 0.90719 0.79210 0.91355 0.83551 0.84726 0.84882 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.04 36.01 0.33 -1.45 16 2 C 0.04 0.59 7.10 -79.62 -0.57 0.03 16 3 N -0.18 -4.00 10.19 35.10 0.36 -3.64 16 4 N -0.58 -13.73 6.11 28.96 0.18 -13.56 16 5 C 0.56 15.98 7.66 -15.26 -0.12 15.86 16 6 O -0.55 -18.23 15.20 4.97 0.08 -18.15 16 7 C -0.54 -14.65 9.27 -37.83 -0.35 -15.00 16 8 H 0.07 1.72 7.85 -52.48 -0.41 1.30 16 9 C 0.09 2.36 5.50 -17.33 -0.10 2.27 16 10 N -0.74 -21.55 11.71 55.56 0.65 -20.90 16 11 Si 0.92 19.07 29.56 -169.99 -5.03 14.04 16 12 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 15 C -0.02 -0.25 5.88 -104.97 -0.62 -0.87 16 16 C -0.07 -1.01 9.58 -39.07 -0.37 -1.38 16 17 C -0.15 -2.02 10.01 -39.57 -0.40 -2.41 16 18 C 0.09 1.09 7.31 -39.17 -0.29 0.81 16 19 F -0.15 -1.87 17.26 2.25 0.04 -1.83 16 20 C -0.15 -1.73 10.01 -39.57 -0.40 -2.12 16 21 C -0.09 -1.00 9.36 -39.07 -0.37 -1.36 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 24 H 0.07 0.74 6.46 -51.93 -0.34 0.40 16 25 H 0.37 7.34 6.41 -182.59 -1.17 6.17 16 26 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 27 H 0.15 2.54 7.55 -52.49 -0.40 2.14 16 28 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.14 1.21 6.36 -52.49 -0.33 0.87 16 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -33.87 275.62 -6.19 -40.07 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.38 Total: 5.45 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -3.24 Total: -5.64 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 1.19 Total: -38.10 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.08 Total: -18.15 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.87 -6.19 -40.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393819192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.798 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds