Wall clock time and date at job start Mon Mar 30 2020 21:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99902 * 2 1 4 4 O 1.20824 * 119.99923 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99799 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47117 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.46923 * 179.97438 * 6 5 3 8 8 C 1.38344 * 119.97495 * 265.23001 * 7 6 5 9 9 C 1.38779 * 120.58818 * 180.28431 * 8 7 6 10 10 C 1.36524 * 120.54179 * 359.74355 * 9 8 7 11 11 C 1.40691 * 119.92525 * 0.02562 * 10 9 8 12 12 C 1.41152 * 120.28772 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00124 * 204.67017 * 12 11 10 14 14 C 1.39935 * 119.99778 * 24.67555 * 12 11 10 15 15 N 1.30870 * 120.00318 * 17.72925 * 14 12 11 16 16 Si 1.86803 * 119.99841 * 197.72408 * 14 12 11 17 17 H 1.48507 * 109.46936 * 60.00267 * 16 14 12 18 18 H 1.48502 * 109.47019 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47187 * 300.00153 * 16 14 12 20 20 C 1.38402 * 119.97190 * 85.00219 * 7 6 5 21 21 O 1.35641 * 120.26531 * 359.97438 * 20 7 6 22 22 H 1.08991 * 109.47276 * 300.00250 * 1 2 3 23 23 H 1.09004 * 109.46961 * 60.00455 * 1 2 3 24 24 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47461 * 59.99990 * 5 3 2 26 26 H 1.08998 * 109.46968 * 299.99841 * 5 3 2 27 27 H 1.08997 * 109.47157 * 60.00046 * 6 5 3 28 28 H 1.08998 * 109.46697 * 299.99655 * 6 5 3 29 29 H 1.07995 * 119.70803 * 0.02562 * 8 7 6 30 30 H 1.08003 * 119.72779 * 179.72037 * 9 8 7 31 31 H 1.08003 * 120.03735 * 180.02562 * 10 9 8 32 32 H 0.97002 * 119.99689 * 180.02562 * 15 14 12 33 33 H 0.96701 * 114.00142 * 269.71699 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 6 5.5051 2.8208 -0.0011 8 6 6.1901 2.9569 1.1932 9 6 7.5755 3.0366 1.2075 10 6 8.2860 2.9768 0.0433 11 6 7.6123 2.8337 -1.1835 12 6 8.3391 2.7715 -2.3919 13 1 7.8683 3.0579 -3.3206 14 6 9.6699 2.3388 -2.3864 15 7 10.1374 1.6733 -1.3610 16 14 10.7790 2.7108 -3.8427 17 1 10.8807 4.1812 -4.0245 18 1 12.1302 2.1479 -3.5923 19 1 10.2078 2.0987 -5.0691 20 6 6.2011 2.7522 -1.1954 21 8 5.5342 2.6136 -2.3683 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9557 0.7809 -0.8908 26 1 3.9563 0.7805 0.8891 27 1 3.6108 3.2364 0.8889 28 1 3.6101 3.2358 -0.8911 29 1 5.6416 3.0058 2.1222 30 1 8.0959 3.1473 2.1475 31 1 9.3640 3.0392 0.0640 32 1 11.0600 1.3737 -1.3571 33 1 5.3909 1.6947 -2.6331 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396024879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:33 Heat of formation + Delta-G solvation = -126.584308 kcal Electronic energy + Delta-G solvation = -17733.974262 eV Core-core repulsion = 14724.223389 eV Total energy + Delta-G solvation = -3009.750873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35072 -38.42375 -36.48542 -35.20606 -34.28078 -32.77429 -29.56140 -28.76783 -27.34807 -25.22184 -23.98515 -20.87078 -20.74213 -19.87998 -17.61764 -16.88117 -16.84215 -16.50177 -16.33866 -15.37398 -14.59978 -14.31478 -13.73812 -13.67817 -13.46505 -12.76717 -12.56379 -12.36636 -12.14288 -11.81746 -11.56332 -11.36302 -11.05167 -10.81967 -10.75822 -10.69101 -10.46388 -10.40546 -10.26594 -9.66650 -9.21013 -8.95599 -7.43835 -7.27593 -6.82170 -4.39661 2.33743 2.63798 2.70522 2.96494 3.03948 3.07372 3.19341 3.89114 4.52187 4.91180 5.03252 5.09398 5.31875 5.35227 5.42468 5.48681 5.83591 5.86199 6.04336 6.12274 6.41400 6.42782 6.56765 6.67575 6.98936 7.15921 7.27777 7.42962 7.72708 7.85769 7.90913 8.03286 8.18278 8.45071 8.73845 8.79241 9.16772 10.10071 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.004977 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.751334 B = 5624.544661 C = 6036.235849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.510 6.510 5 C -0.104 4.104 6 C -0.054 4.054 7 C -0.083 4.083 8 C -0.226 4.226 9 C -0.108 4.108 10 C -0.154 4.154 11 C 0.094 3.906 12 C -0.450 4.450 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.791 5.791 16 Si 0.911 3.089 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.020 4.020 21 O -0.491 6.491 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.282 0.718 33 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -4.315 1.870 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.305 3.695 4 O -0.397 6.397 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.084 4.084 8 C -0.246 4.246 9 C -0.127 4.127 10 C -0.173 4.173 11 C 0.091 3.909 12 C -0.479 4.479 13 H 0.102 0.898 14 C -0.143 4.143 15 N -0.417 5.417 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.065 4.065 21 O -0.298 6.298 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.885 -3.521 1.958 9.756 hybrid contribution 0.409 -0.470 -0.562 0.839 sum -8.476 -3.991 1.396 9.472 Atomic orbital electron populations 1.23207 0.77001 1.03331 1.02381 1.86545 1.23015 1.34112 1.84374 1.24220 0.92630 0.80965 0.71704 1.90645 1.67367 1.36376 1.45359 1.21454 0.85639 1.01146 1.05865 1.20170 0.93364 0.92561 1.03101 1.19456 0.92763 1.02973 0.93210 1.20124 0.93904 1.15372 0.95158 1.20431 0.93748 1.01390 0.97123 1.21005 0.99919 1.04902 0.91520 1.17878 0.90173 0.89110 0.93745 1.19504 0.95278 1.37906 0.95187 0.89802 1.25974 0.98660 0.92350 0.97356 1.69834 1.16673 1.25075 1.30073 0.86326 0.78546 0.80113 0.81527 1.18750 1.20348 1.18922 1.18272 0.90188 1.14540 0.83539 1.84741 1.77203 1.29223 1.38639 0.92115 0.92049 0.88386 0.87769 0.87704 0.91566 0.90534 0.89136 0.89263 0.86258 0.90708 0.79528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.83 10.57 -39.24 -0.41 -5.24 16 3 C 0.46 7.01 7.96 36.01 0.29 7.30 16 4 O -0.51 -9.01 15.73 -18.75 -0.29 -9.31 16 5 C -0.10 -1.57 5.79 -27.88 -0.16 -1.73 16 6 C -0.05 -0.99 4.36 -27.88 -0.12 -1.11 16 7 C -0.08 -1.80 5.14 -104.52 -0.54 -2.34 16 8 C -0.23 -4.88 9.67 -39.34 -0.38 -5.26 16 9 C -0.11 -2.47 9.97 -40.00 -0.40 -2.87 16 10 C -0.15 -3.91 8.64 -39.27 -0.34 -4.25 16 11 C 0.09 2.46 5.58 -106.68 -0.60 1.86 16 12 C -0.45 -11.78 8.72 -37.84 -0.33 -12.11 16 13 H 0.08 2.18 7.65 -52.49 -0.40 1.78 16 14 C 0.07 1.83 5.14 -17.33 -0.09 1.75 16 15 N -0.79 -19.81 10.96 55.55 0.61 -19.20 16 16 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 C -0.02 -0.48 6.71 -38.34 -0.26 -0.74 16 21 O -0.49 -10.83 11.94 -18.62 -0.22 -11.05 16 22 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 23 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 24 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 28 H 0.08 1.48 7.65 -51.93 -0.40 1.08 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.12 3.11 6.16 -52.48 -0.32 2.79 16 32 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 33 H 0.35 6.38 9.06 45.56 0.41 6.79 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -29.28 292.00 -6.03 -35.31 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -3.22 Total: 9.79 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.86 Total: -18.09 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.20 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.93 Total: -25.61 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.28 -6.03 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.274 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds