Wall clock time and date at job start Mon Mar 30 2020 21:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99741 * 2 1 4 4 C 1.38749 * 120.05597 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94070 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05437 * 359.74969 * 5 4 3 7 7 C 1.50701 * 119.94108 * 180.27552 * 6 5 4 8 8 C 1.50702 * 109.47346 * 265.23208 * 7 6 5 9 9 O 1.20830 * 119.99570 * 359.97438 * 8 7 6 10 10 O 1.34229 * 120.00260 * 180.02562 * 8 7 6 11 11 C 1.38236 * 120.11525 * 0.50507 * 6 5 4 12 12 C 1.50703 * 119.97426 * 179.76856 * 11 6 5 13 13 C 1.50701 * 109.47064 * 84.72318 * 12 11 6 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38169 * 120.05477 * 359.49156 * 11 6 5 22 22 H 1.09005 * 109.47156 * 59.99993 * 1 2 3 23 23 H 1.08996 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47068 * 300.00053 * 1 2 3 25 25 H 1.07998 * 120.02922 * 359.97438 * 4 3 2 26 26 H 1.08008 * 119.96873 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47389 * 25.22838 * 7 6 5 28 28 H 1.08999 * 109.47535 * 145.23159 * 7 6 5 29 29 H 0.96696 * 116.99915 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47152 * 324.72411 * 12 11 6 31 31 H 1.09001 * 109.46980 * 204.72511 * 12 11 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.02943 * 180.22713 * 21 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 3.9860 5.0185 0.0131 8 6 4.3244 5.4172 -1.4002 9 8 4.0397 4.6856 -2.3188 10 8 4.9430 6.5843 -1.6386 11 6 4.0559 2.5172 0.0005 12 6 5.5608 2.5983 0.0009 13 6 6.0553 2.7486 1.4165 14 1 5.3505 2.7817 2.2341 15 6 7.4077 2.8429 1.6679 16 7 8.2660 2.8021 0.6724 17 14 8.0207 3.0285 3.4227 18 1 8.2577 1.6849 4.0090 19 1 9.2894 3.8004 3.4248 20 1 7.0024 3.7479 4.2293 21 6 3.4311 1.2849 0.0000 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2128 2.3203 0.0005 26 1 1.3339 4.5115 0.0019 27 1 3.3211 5.7629 0.4512 28 1 4.9010 4.9572 0.6023 29 1 5.1398 6.7964 -2.5613 30 1 5.8785 3.4586 -0.5882 31 1 5.9738 1.6879 -0.4335 32 1 9.2174 2.8688 0.8493 33 1 4.0206 0.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396028303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:42 Heat of formation + Delta-G solvation = -118.077191 kcal Electronic energy + Delta-G solvation = -18108.201680 eV Core-core repulsion = 15098.819703 eV Total energy + Delta-G solvation = -3009.381977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09830 -39.37643 -37.39978 -35.58166 -33.40470 -31.85842 -31.21776 -28.43710 -26.77108 -26.31715 -23.31453 -22.21829 -20.93738 -19.71852 -17.64722 -17.22328 -16.38289 -16.17262 -15.89840 -15.42376 -15.15713 -14.77648 -14.53734 -13.69522 -13.32144 -12.83011 -12.67860 -12.37560 -12.00148 -11.81804 -11.55864 -11.43853 -11.12201 -11.00974 -10.83694 -10.58492 -10.47385 -10.34959 -10.05403 -9.58445 -9.46414 -8.46841 -8.02426 -7.54650 -6.08549 -4.13827 1.92952 2.04273 2.74212 3.28723 3.35420 3.38437 3.57088 3.62002 4.34869 4.51817 5.10410 5.23647 5.25872 5.26209 5.36429 5.39565 5.54909 5.64070 5.90681 5.92538 6.14567 6.25397 6.40258 6.66365 6.82483 6.87759 6.92895 7.13605 7.36172 7.51957 7.77821 7.86583 7.88156 8.24611 8.37583 8.92323 9.50693 11.01026 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.008321 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.049786 B = 3364.031164 C = 4631.090950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.125 3.875 4 C -0.234 4.234 5 C -0.070 4.070 6 C -0.118 4.118 7 C -0.069 4.069 8 C 0.483 3.517 9 O -0.512 6.512 10 O -0.521 6.521 11 C 0.022 3.978 12 C 0.047 3.953 13 C -0.516 4.516 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.155 4.155 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.051 0.949 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.402 0.598 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 2.832 -1.572 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.081 3.919 4 C -0.252 4.252 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.106 4.106 8 C 0.326 3.674 9 O -0.400 6.400 10 O -0.333 6.333 11 C 0.022 3.978 12 C 0.011 3.989 13 C -0.554 4.554 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.173 4.173 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.070 0.930 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.260 0.740 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.233 2.346 -1.455 12.540 hybrid contribution 0.265 0.309 0.274 0.491 sum -11.968 2.655 -1.181 12.315 Atomic orbital electron populations 1.22939 0.79395 1.03137 1.01007 1.86054 1.20596 1.27686 1.89180 1.19050 0.92382 0.83564 0.96949 1.20862 0.98967 0.92358 1.13046 1.20625 0.93649 0.96593 0.97930 1.18972 0.92633 0.93417 1.06789 1.20255 1.04628 0.95100 0.90617 1.23619 0.73158 0.77696 0.92918 1.90695 1.50697 1.51844 1.46729 1.84559 1.72658 1.39892 1.36157 1.20306 0.98727 0.90412 0.88404 1.18403 0.84028 0.98695 0.97817 1.21016 0.91687 1.51047 0.91629 0.92153 1.25015 0.96835 0.95045 0.97226 1.69964 1.02279 1.49671 1.30908 0.86541 0.78320 0.78280 0.84631 1.20560 1.21138 1.19661 1.20340 0.90500 0.98782 1.07719 0.93072 0.88876 0.93021 0.86408 0.86741 0.88160 0.84534 0.73994 0.95164 0.95089 0.92720 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.37 10.50 -19.44 -0.20 -5.58 16 3 C 0.12 2.33 6.69 -39.22 -0.26 2.07 16 4 C -0.23 -3.89 9.04 -39.43 -0.36 -4.24 16 5 C -0.07 -1.19 9.67 -39.60 -0.38 -1.58 16 6 C -0.12 -2.32 4.38 -104.60 -0.46 -2.77 16 7 C -0.07 -1.23 5.27 -29.03 -0.15 -1.38 16 8 C 0.48 8.79 7.52 36.01 0.27 9.06 16 9 O -0.51 -10.81 16.79 -18.75 -0.31 -11.12 16 10 O -0.52 -7.77 13.42 -39.25 -0.53 -8.30 16 11 C 0.02 0.49 5.07 -104.65 -0.53 -0.04 16 12 C 0.05 1.21 4.43 -29.03 -0.13 1.09 16 13 C -0.52 -13.92 8.27 -34.44 -0.28 -14.21 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.15 -3.28 9.62 -39.43 -0.38 -3.66 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 26 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 27 H 0.10 1.40 8.05 -51.93 -0.42 0.98 16 28 H 0.14 2.71 6.39 -51.93 -0.33 2.38 16 29 H 0.40 4.17 9.10 45.56 0.41 4.58 16 30 H 0.03 0.81 6.42 -51.93 -0.33 0.48 16 31 H 0.03 0.85 8.05 -51.93 -0.42 0.44 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -32.66 290.03 -5.75 -38.41 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.02 Total: 4.06 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.77 Total: -12.75 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.05 Total: -25.00 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.66 -5.75 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396028303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.668 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds