Wall clock time and date at job start Mon Mar 30 2020 21:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99741 * 2 1 4 4 C 1.38749 * 120.05597 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94070 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05437 * 359.74969 * 5 4 3 7 7 C 1.50701 * 119.94108 * 180.27552 * 6 5 4 8 8 C 1.50702 * 109.47346 * 265.23208 * 7 6 5 9 9 O 1.20830 * 119.99570 * 359.97438 * 8 7 6 10 10 O 1.34229 * 120.00260 * 180.02562 * 8 7 6 11 11 C 1.38236 * 120.11525 * 0.50507 * 6 5 4 12 12 C 1.50703 * 119.97426 * 179.76856 * 11 6 5 13 13 C 1.50701 * 109.47064 * 84.72318 * 12 11 6 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38169 * 120.05477 * 359.49156 * 11 6 5 22 22 H 1.09005 * 109.47156 * 59.99993 * 1 2 3 23 23 H 1.08996 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47068 * 300.00053 * 1 2 3 25 25 H 1.07998 * 120.02922 * 359.97438 * 4 3 2 26 26 H 1.08008 * 119.96873 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47389 * 25.22838 * 7 6 5 28 28 H 1.08999 * 109.47535 * 145.23159 * 7 6 5 29 29 H 0.96696 * 116.99915 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47152 * 324.72411 * 12 11 6 31 31 H 1.09001 * 109.46980 * 204.72511 * 12 11 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.02943 * 180.22713 * 21 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 3.9860 5.0185 0.0131 8 6 4.3244 5.4172 -1.4002 9 8 4.0397 4.6856 -2.3188 10 8 4.9430 6.5843 -1.6386 11 6 4.0559 2.5172 0.0005 12 6 5.5608 2.5983 0.0009 13 6 6.0553 2.7486 1.4165 14 1 5.3505 2.7817 2.2341 15 6 7.4077 2.8429 1.6679 16 7 8.2660 2.8021 0.6724 17 14 8.0207 3.0285 3.4227 18 1 8.2577 1.6849 4.0090 19 1 9.2894 3.8004 3.4248 20 1 7.0024 3.7479 4.2293 21 6 3.4311 1.2849 0.0000 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2128 2.3203 0.0005 26 1 1.3339 4.5115 0.0019 27 1 3.3211 5.7629 0.4512 28 1 4.9010 4.9572 0.6023 29 1 5.1398 6.7964 -2.5613 30 1 5.8785 3.4586 -0.5882 31 1 5.9738 1.6879 -0.4335 32 1 9.2174 2.8688 0.8493 33 1 4.0206 0.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396028303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:42 Heat of formation + Delta-G solvation = -140.016544 kcal Electronic energy + Delta-G solvation = -18109.153041 eV Core-core repulsion = 15098.819703 eV Total energy + Delta-G solvation = -3010.333339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51367 -40.72265 -38.77110 -36.95220 -35.36231 -33.31434 -32.92556 -29.86882 -28.41720 -27.51250 -25.22695 -23.61185 -22.46121 -21.12721 -19.04446 -18.66142 -18.38244 -17.54925 -17.34394 -16.55319 -16.51998 -16.49538 -16.14009 -15.07386 -14.67225 -14.51685 -14.21411 -13.97842 -13.39561 -13.31689 -13.13336 -12.85983 -12.71490 -12.55671 -12.41762 -12.30610 -11.92590 -11.90673 -11.56974 -11.38264 -11.30636 -10.60654 -9.59903 -8.96461 -8.19371 -6.33285 0.49057 0.55978 1.32535 1.42640 1.43544 1.54920 2.28467 2.40582 2.45673 3.01786 3.12025 3.82398 3.95494 4.07266 4.28041 4.45373 4.45721 4.50035 4.60533 4.66564 4.73911 4.77419 4.93116 5.11712 5.30435 5.33535 5.41274 5.50407 5.68195 5.74180 5.90653 6.03155 6.16071 6.56534 6.79462 7.09513 7.35737 8.90396 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.008321 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.049786 B = 3364.031164 C = 4631.090950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.126 3.874 4 C -0.221 4.221 5 C -0.062 4.062 6 C -0.130 4.130 7 C -0.069 4.069 8 C 0.487 3.513 9 O -0.548 6.548 10 O -0.513 6.513 11 C -0.010 4.010 12 C 0.061 3.939 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.008 3.992 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.258 1.258 21 C -0.185 4.185 22 H 0.065 0.935 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.146 0.854 28 H 0.110 0.890 29 H 0.423 0.577 30 H 0.009 0.991 31 H -0.010 1.010 32 H 0.265 0.735 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 4.102 -0.354 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.081 3.919 4 C -0.239 4.239 5 C -0.079 4.079 6 C -0.131 4.131 7 C -0.106 4.106 8 C 0.332 3.668 9 O -0.439 6.439 10 O -0.326 6.326 11 C -0.010 4.010 12 C 0.024 3.976 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.789 3.211 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.182 1.182 21 C -0.204 4.204 22 H 0.084 0.916 23 H 0.136 0.864 24 H 0.086 0.914 25 H 0.178 0.822 26 H 0.176 0.824 27 H 0.164 0.836 28 H 0.128 0.872 29 H 0.284 0.716 30 H 0.027 0.973 31 H 0.009 0.991 32 H 0.074 0.926 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.980 3.631 -0.241 15.415 hybrid contribution 1.011 -0.122 -0.177 1.033 sum -13.969 3.510 -0.418 14.409 Atomic orbital electron populations 1.23360 0.76298 1.05501 1.02434 1.86035 1.23752 1.26934 1.88823 1.19029 0.91502 0.85219 0.96183 1.21337 1.00957 0.91171 1.10432 1.21096 0.92575 0.98579 0.95695 1.19188 0.94040 0.92987 1.06864 1.20279 1.04345 0.95664 0.90303 1.23694 0.72576 0.77839 0.92733 1.90681 1.52414 1.53014 1.47778 1.84504 1.71690 1.38295 1.38106 1.20038 0.96764 0.92362 0.91816 1.18079 0.87107 0.95571 0.96801 1.21273 0.92036 1.50470 0.92242 0.92044 1.25923 0.96998 0.94563 1.01615 1.70100 1.02620 1.50878 1.33349 0.85452 0.78024 0.78351 0.79318 1.20306 1.20550 1.18151 1.20274 0.92379 0.97758 1.10000 0.91617 0.86354 0.91370 0.82159 0.82377 0.83640 0.87159 0.71619 0.97298 0.99148 0.92581 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -10.92 10.50 -92.48 -0.97 -11.89 16 3 C 0.13 4.56 6.69 22.51 0.15 4.71 16 4 C -0.22 -6.56 9.04 22.37 0.20 -6.36 16 5 C -0.06 -1.90 9.67 22.25 0.22 -1.68 16 6 C -0.13 -5.04 4.38 -19.85 -0.09 -5.12 16 7 C -0.07 -2.39 5.27 29.10 0.15 -2.23 16 8 C 0.49 17.45 7.52 71.24 0.54 17.99 16 9 O -0.55 -23.27 16.79 21.95 0.37 -22.90 16 10 O -0.51 -14.65 13.42 -51.41 -0.69 -15.34 16 11 C -0.01 -0.45 5.07 -19.88 -0.10 -0.55 16 12 C 0.06 3.37 4.43 29.10 0.13 3.50 16 13 C -0.52 -29.33 8.27 25.60 0.21 -29.11 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.01 0.42 5.46 84.66 0.46 0.88 16 16 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 17 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 C -0.19 -8.20 9.62 22.37 0.22 -7.99 16 22 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 23 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 24 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 25 H 0.16 3.37 6.30 -2.91 -0.02 3.35 16 26 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 27 H 0.15 3.57 8.05 -2.39 -0.02 3.55 16 28 H 0.11 4.46 6.39 -2.39 -0.02 4.44 16 29 H 0.42 8.18 9.10 -74.06 -0.67 7.51 16 30 H 0.01 0.51 6.42 -2.39 -0.02 0.49 16 31 H -0.01 -0.60 8.05 -2.39 -0.02 -0.62 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 33 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -74.54 290.03 4.68 -69.85 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.46 Total: 14.90 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.20 Total: -24.51 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -1.29 Total: -50.12 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.54 4.68 -69.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396028303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.162 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds